Wall clock time and date at job start Tue Mar 31 2020 01:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 C 1.52996 * 109.47065 * 120.00168 * 2 1 3 5 5 C 1.52997 * 109.47417 * 64.99726 * 4 2 1 6 6 N 1.46499 * 109.47247 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00229 * 90.00234 * 6 5 4 8 8 C 1.50706 * 109.47106 * 269.99670 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.34779 * 119.99985 * 269.99690 * 6 5 4 17 17 O 1.21278 * 120.00232 * 180.02562 * 16 6 5 18 18 C 1.50703 * 119.99735 * 0.02562 * 16 6 5 19 19 H 1.09004 * 115.52800 * 34.41147 * 18 16 6 20 20 C 1.53000 * 117.45953 * 179.90817 * 18 16 6 21 21 H 1.08996 * 119.30140 * 355.35993 * 20 18 16 22 22 C 1.54267 * 118.19674 * 201.21354 * 20 18 16 23 23 C 1.54896 * 104.19528 * 272.20946 * 22 20 18 24 24 C 1.54888 * 102.74673 * 37.94898 * 23 22 20 25 25 C 1.53002 * 117.46289 * 248.91508 * 18 16 6 26 26 H 1.08997 * 119.29519 * 3.71174 * 25 18 16 27 27 H 1.09000 * 109.46951 * 59.99632 * 1 2 3 28 28 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 300.00036 * 1 2 3 30 30 H 1.09001 * 109.47002 * 239.99964 * 2 1 3 31 31 H 1.08999 * 109.46832 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47021 * 299.99825 * 3 2 1 33 33 H 1.08993 * 109.46899 * 59.99975 * 3 2 1 34 34 H 1.09007 * 109.47050 * 305.00116 * 4 2 1 35 35 H 1.09003 * 109.47406 * 185.00044 * 4 2 1 36 36 H 1.09000 * 109.46958 * 59.99851 * 5 4 2 37 37 H 1.09000 * 109.47408 * 300.00094 * 5 4 2 38 38 H 1.09001 * 109.47001 * 149.99960 * 7 6 5 39 39 H 1.09000 * 109.47574 * 30.00177 * 7 6 5 40 40 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 41 41 H 1.08996 * 110.49237 * 30.89326 * 22 20 18 42 42 H 1.09002 * 110.48146 * 153.40794 * 22 20 18 43 43 H 1.09000 * 110.75020 * 156.25749 * 23 22 20 44 44 H 1.08992 * 110.76241 * 279.44626 * 23 22 20 45 45 H 1.09000 * 110.48967 * 80.72646 * 24 23 22 46 46 H 1.08994 * 110.48519 * 203.24131 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 7 2.1231 -2.8859 2.3844 7 6 1.2827 -2.9584 3.5822 8 6 1.5605 -1.7679 4.4636 9 1 2.2898 -1.0309 4.1614 10 6 0.8837 -1.6197 5.6555 11 7 -0.0041 -2.5176 6.0236 12 14 1.2276 -0.1438 6.7476 13 1 2.2616 0.7119 6.1123 14 1 -0.0209 0.6396 6.9288 15 1 1.7159 -0.6098 8.0704 16 6 3.3450 -3.4546 2.3832 17 8 3.7487 -4.0266 3.3735 18 6 4.2097 -3.3796 1.1512 19 1 4.1199 -2.4622 0.5694 20 6 5.5869 -4.0431 1.2144 21 1 5.9282 -4.4752 2.1551 22 6 6.6651 -3.5814 0.2123 23 6 6.4346 -4.4746 -1.0320 24 6 4.8908 -4.5826 -1.0939 25 6 4.4595 -4.6798 0.3843 26 1 3.9637 -5.5945 0.7094 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6444 1.2952 36 1 2.0698 -2.6550 0.3002 37 1 0.5489 -2.2724 1.1421 38 1 1.5066 -3.8748 4.1282 39 1 0.2326 -2.9570 3.2900 40 1 -0.4805 -2.4131 6.8621 41 1 6.5254 -2.5306 -0.0412 42 1 7.6618 -3.7448 0.6223 43 1 6.8246 -3.9946 -1.9295 44 1 6.8880 -5.4559 -0.8925 45 1 4.4645 -3.6933 -1.5583 46 1 4.5926 -5.4773 -1.6403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246439905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:47 Heat of formation + Delta-G solvation = -38.805881 kcal Electronic energy + Delta-G solvation = -22852.575652 eV Core-core repulsion = 19741.796177 eV Total energy + Delta-G solvation = -3110.779475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06621 -38.08622 -36.60049 -34.39468 -32.59992 -31.58190 -28.93583 -28.23825 -27.26163 -26.95143 -24.30741 -23.02773 -21.97343 -20.48029 -19.74002 -19.56512 -18.36615 -16.66414 -16.45611 -15.75157 -14.91123 -14.89809 -14.77265 -14.22573 -13.94780 -13.62860 -13.41478 -13.13636 -12.79055 -12.53892 -12.34484 -12.10902 -12.01771 -11.61506 -11.39079 -11.28829 -11.21335 -11.18198 -11.07688 -10.97275 -10.88870 -10.69261 -10.49330 -10.46872 -10.27130 -9.93421 -9.86417 -9.63177 -9.50032 -8.82479 -8.40319 -7.59524 -6.01198 -4.04818 3.12687 3.30910 3.38827 3.42843 3.85667 4.02760 4.46301 4.61516 4.81006 4.82024 5.06950 5.09607 5.15812 5.23991 5.28698 5.32218 5.40561 5.47067 5.50602 5.56142 5.62903 5.70853 5.75828 5.78883 5.83351 5.89655 5.92841 5.97161 6.02273 6.04021 6.11305 6.15749 6.28567 6.32028 6.33889 6.42545 6.47713 6.60510 6.86682 7.11651 7.47806 7.61516 7.95924 8.27557 8.48456 8.94783 9.16118 9.59941 11.07030 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.005855 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.703080 B = 4781.428226 C = 6042.368620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.135 4.135 5 C 0.117 3.883 6 N -0.593 5.593 7 C 0.246 3.754 8 C -0.519 4.519 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.535 3.465 17 O -0.542 6.542 18 C -0.154 4.154 19 H 0.115 0.885 20 C -0.136 4.136 21 H 0.120 0.880 22 C -0.096 4.096 23 C -0.122 4.122 24 C -0.094 4.094 25 C -0.144 4.144 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 1.335 -17.419 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.173 4.173 5 C -0.007 4.007 6 N -0.323 5.323 7 C 0.127 3.873 8 C -0.558 4.558 9 H 0.077 0.923 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.722 3.278 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.321 3.679 17 O -0.420 6.420 18 C -0.176 4.176 19 H 0.133 0.867 20 C -0.155 4.155 21 H 0.138 0.862 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.131 4.131 25 C -0.162 4.162 26 H 0.129 0.871 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.804 0.977 -16.726 18.083 hybrid contribution -0.016 0.968 0.779 1.243 sum 6.788 1.945 -15.947 17.440 Atomic orbital electron populations 1.21892 0.95308 1.01965 1.01448 1.21068 0.95951 0.95961 0.98235 1.21822 1.00682 0.96335 1.01452 1.22153 1.00760 0.95898 0.98527 1.21489 0.99861 0.91943 0.87425 1.48141 1.16263 1.52684 1.15245 1.19293 0.88784 0.98371 0.80878 1.21474 1.22336 1.07697 1.04251 0.92290 1.24927 0.95140 0.96573 0.97507 1.69949 1.25879 1.34699 1.22981 0.86494 0.77963 0.82617 0.80677 1.19810 1.21022 1.20939 1.19342 0.81767 0.79277 0.87486 1.90653 1.72008 1.44297 1.35028 1.22519 0.98384 0.97832 0.98835 0.86735 1.23191 0.88359 1.03499 1.00430 0.86214 1.21988 0.97822 0.99377 0.94191 1.22678 0.95685 0.99995 0.97608 1.21971 0.95292 1.01958 0.93923 1.23183 1.03425 0.96159 0.93470 0.87066 0.93403 0.92389 0.92301 0.91795 0.93016 0.93210 0.92547 0.89719 0.92488 0.91887 0.90672 0.94013 0.95084 0.92869 0.91447 0.91141 0.91504 0.91305 0.91334 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 2 C -0.09 -1.14 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 4 C -0.13 -2.11 4.89 -26.73 -0.13 -2.24 16 5 C 0.12 1.94 4.84 -4.04 -0.02 1.92 16 6 N -0.59 -12.77 2.46 -175.06 -0.43 -13.20 16 7 C 0.25 6.49 5.20 -5.19 -0.03 6.46 16 8 C -0.52 -14.67 8.92 -34.44 -0.31 -14.98 16 9 H 0.06 1.67 7.42 -52.49 -0.39 1.28 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 12 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.53 11.55 7.45 -10.98 -0.08 11.47 16 17 O -0.54 -14.13 15.90 5.56 0.09 -14.04 16 18 C -0.15 -2.48 4.34 -91.77 -0.40 -2.88 16 19 H 0.11 1.65 6.48 -51.93 -0.34 1.31 16 20 C -0.14 -1.98 6.39 -89.54 -0.57 -2.55 16 21 H 0.12 1.98 7.79 -51.93 -0.40 1.58 16 22 C -0.10 -1.06 6.63 -25.07 -0.17 -1.22 16 23 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 24 C -0.09 -0.96 6.63 -25.06 -0.17 -1.12 16 25 C -0.14 -1.96 6.64 -89.52 -0.59 -2.55 16 26 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.60 7.26 -51.93 -0.38 1.22 16 35 H 0.06 0.90 7.45 -51.93 -0.39 0.52 16 36 H 0.06 0.88 6.65 -51.93 -0.35 0.54 16 37 H 0.07 1.23 6.32 -51.93 -0.33 0.90 16 38 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 39 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -32.11 363.25 -9.81 -41.92 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.33 Total: 0.45 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.32 Total: -11.59 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.31 Total: -39.25 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.11 -9.81 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246439905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.111 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds