Wall clock time and date at job start Tue Mar 31 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 C 1.52996 * 109.47065 * 120.00168 * 2 1 3 5 5 C 1.52997 * 109.47417 * 64.99726 * 4 2 1 6 6 N 1.46499 * 109.47247 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00229 * 90.00234 * 6 5 4 8 8 C 1.50706 * 109.47106 * 269.99670 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.34779 * 119.99985 * 269.99690 * 6 5 4 17 17 O 1.21278 * 120.00232 * 180.02562 * 16 6 5 18 18 C 1.50703 * 119.99735 * 0.02562 * 16 6 5 19 19 H 1.09004 * 115.52800 * 34.41147 * 18 16 6 20 20 C 1.53000 * 117.45953 * 179.90817 * 18 16 6 21 21 H 1.08996 * 119.30140 * 355.35993 * 20 18 16 22 22 C 1.54267 * 118.19674 * 201.21354 * 20 18 16 23 23 C 1.54896 * 104.19528 * 272.20946 * 22 20 18 24 24 C 1.54888 * 102.74673 * 37.94898 * 23 22 20 25 25 C 1.53002 * 117.46289 * 248.91508 * 18 16 6 26 26 H 1.08997 * 119.29519 * 3.71174 * 25 18 16 27 27 H 1.09000 * 109.46951 * 59.99632 * 1 2 3 28 28 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 300.00036 * 1 2 3 30 30 H 1.09001 * 109.47002 * 239.99964 * 2 1 3 31 31 H 1.08999 * 109.46832 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47021 * 299.99825 * 3 2 1 33 33 H 1.08993 * 109.46899 * 59.99975 * 3 2 1 34 34 H 1.09007 * 109.47050 * 305.00116 * 4 2 1 35 35 H 1.09003 * 109.47406 * 185.00044 * 4 2 1 36 36 H 1.09000 * 109.46958 * 59.99851 * 5 4 2 37 37 H 1.09000 * 109.47408 * 300.00094 * 5 4 2 38 38 H 1.09001 * 109.47001 * 149.99960 * 7 6 5 39 39 H 1.09000 * 109.47574 * 30.00177 * 7 6 5 40 40 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 41 41 H 1.08996 * 110.49237 * 30.89326 * 22 20 18 42 42 H 1.09002 * 110.48146 * 153.40794 * 22 20 18 43 43 H 1.09000 * 110.75020 * 156.25749 * 23 22 20 44 44 H 1.08992 * 110.76241 * 279.44626 * 23 22 20 45 45 H 1.09000 * 110.48967 * 80.72646 * 24 23 22 46 46 H 1.08994 * 110.48519 * 203.24131 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 7 2.1231 -2.8859 2.3844 7 6 1.2827 -2.9584 3.5822 8 6 1.5605 -1.7679 4.4636 9 1 2.2898 -1.0309 4.1614 10 6 0.8837 -1.6197 5.6555 11 7 -0.0041 -2.5176 6.0236 12 14 1.2276 -0.1438 6.7476 13 1 2.2616 0.7119 6.1123 14 1 -0.0209 0.6396 6.9288 15 1 1.7159 -0.6098 8.0704 16 6 3.3450 -3.4546 2.3832 17 8 3.7487 -4.0266 3.3735 18 6 4.2097 -3.3796 1.1512 19 1 4.1199 -2.4622 0.5694 20 6 5.5869 -4.0431 1.2144 21 1 5.9282 -4.4752 2.1551 22 6 6.6651 -3.5814 0.2123 23 6 6.4346 -4.4746 -1.0320 24 6 4.8908 -4.5826 -1.0939 25 6 4.4595 -4.6798 0.3843 26 1 3.9637 -5.5945 0.7094 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6444 1.2952 36 1 2.0698 -2.6550 0.3002 37 1 0.5489 -2.2724 1.1421 38 1 1.5066 -3.8748 4.1282 39 1 0.2326 -2.9570 3.2900 40 1 -0.4805 -2.4131 6.8621 41 1 6.5254 -2.5306 -0.0412 42 1 7.6618 -3.7448 0.6223 43 1 6.8246 -3.9946 -1.9295 44 1 6.8880 -5.4559 -0.8925 45 1 4.4645 -3.6933 -1.5583 46 1 4.5926 -5.4773 -1.6403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246439905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:46 Heat of formation + Delta-G solvation = -56.107205 kcal Electronic energy + Delta-G solvation = -22853.325894 eV Core-core repulsion = 19741.796177 eV Total energy + Delta-G solvation = -3111.529717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43930 -39.46157 -37.94856 -36.06050 -34.67473 -32.66513 -30.50551 -29.14324 -29.03214 -27.93805 -26.01320 -24.52229 -23.48042 -21.43643 -20.82858 -20.62318 -19.91506 -18.65162 -18.14981 -17.37305 -16.51242 -16.24224 -15.84004 -15.76553 -15.32432 -14.84031 -14.62442 -14.36944 -14.14980 -13.95244 -13.75583 -13.61059 -13.32017 -13.09658 -12.99656 -12.69872 -12.66013 -12.40639 -12.34173 -12.21871 -12.09866 -11.94486 -11.80807 -11.64138 -11.55031 -11.42090 -11.33754 -11.06064 -10.79013 -10.64896 -10.48650 -9.44058 -8.23739 -6.36869 1.32236 1.34778 1.46158 1.59264 2.24295 2.39140 2.76927 3.05673 3.44773 3.76326 3.81007 3.93820 3.99685 4.11099 4.20597 4.22741 4.27999 4.35070 4.52784 4.55523 4.57690 4.70104 4.72441 4.85375 4.86425 4.88947 4.94966 4.99925 5.03721 5.11882 5.16228 5.18929 5.22486 5.24859 5.27135 5.27975 5.32390 5.41287 5.52598 5.54028 5.58153 5.65912 5.84736 6.05254 6.68936 6.77530 7.26936 7.45857 8.83950 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.005855 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.703080 B = 4781.428226 C = 6042.368620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.126 4.126 5 C 0.114 3.886 6 N -0.597 5.597 7 C 0.261 3.739 8 C -0.530 4.530 9 H 0.053 0.947 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.268 1.268 15 H -0.282 1.282 16 C 0.523 3.477 17 O -0.602 6.602 18 C -0.161 4.161 19 H 0.141 0.859 20 C -0.146 4.146 21 H 0.087 0.913 22 C -0.090 4.090 23 C -0.115 4.115 24 C -0.087 4.087 25 C -0.129 4.129 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.075 0.925 38 H -0.006 1.006 39 H 0.022 0.978 40 H 0.266 0.734 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 2.875 -20.869 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.009 4.009 6 N -0.326 5.326 7 C 0.140 3.860 8 C -0.568 4.568 9 H 0.071 0.929 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.193 1.193 15 H -0.208 1.208 16 C 0.313 3.687 17 O -0.485 6.485 18 C -0.182 4.182 19 H 0.158 0.842 20 C -0.165 4.165 21 H 0.105 0.895 22 C -0.128 4.128 23 C -0.152 4.152 24 C -0.124 4.124 25 C -0.148 4.148 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.012 0.988 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.964 2.537 -20.227 21.886 hybrid contribution -0.405 0.417 1.883 1.970 sum 7.559 2.954 -18.345 20.060 Atomic orbital electron populations 1.21902 0.95311 1.01882 1.01595 1.21044 0.95876 0.96366 0.97091 1.21818 1.01041 0.95628 1.01717 1.22038 1.00422 0.95106 0.98927 1.21797 1.00153 0.92475 0.86429 1.48162 1.16078 1.53120 1.15254 1.18754 0.89013 0.95684 0.82551 1.21661 1.22200 1.07937 1.05035 0.92925 1.25824 0.94823 0.99574 0.98927 1.70063 1.26723 1.36533 1.23642 0.85433 0.78443 0.79057 0.78309 1.19246 1.19306 1.20772 1.20383 0.81848 0.77759 0.88756 1.90610 1.73306 1.46771 1.37767 1.22366 0.98493 1.00306 0.97035 0.84185 1.23308 0.89268 1.03440 1.00466 0.89456 1.22035 0.96603 1.00341 0.93790 1.22680 0.94930 1.00024 0.97564 1.22046 0.95930 1.03663 0.90748 1.23354 1.01640 0.93775 0.96029 0.88772 0.91010 0.92635 0.94403 0.88958 0.92478 0.91016 0.94234 0.93749 0.92604 0.88183 0.90678 0.98818 0.95992 0.92486 0.90376 0.90414 0.88751 0.91016 0.89603 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.95 71.98 0.64 -2.70 16 2 C -0.08 -1.86 2.92 -10.79 -0.03 -1.89 16 3 C -0.14 -2.94 9.19 71.98 0.66 -2.28 16 4 C -0.13 -3.88 4.89 30.59 0.15 -3.73 16 5 C 0.11 3.71 4.84 86.38 0.42 4.13 16 6 N -0.60 -26.80 2.46 -826.16 -2.03 -28.83 16 7 C 0.26 14.70 5.20 85.64 0.45 15.15 16 8 C -0.53 -31.39 8.92 25.60 0.23 -31.16 16 9 H 0.05 3.12 7.42 -2.91 -0.02 3.09 16 10 C 0.01 0.42 5.46 84.65 0.46 0.88 16 11 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 12 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 16 C 0.52 23.59 7.45 87.66 0.65 24.24 16 17 O -0.60 -33.71 15.90 -3.02 -0.05 -33.76 16 18 C -0.16 -5.07 4.34 -11.54 -0.05 -5.12 16 19 H 0.14 3.64 6.48 -2.38 -0.02 3.63 16 20 C -0.15 -4.18 6.39 -10.09 -0.06 -4.24 16 21 H 0.09 3.06 7.79 -2.39 -0.02 3.04 16 22 C -0.09 -1.72 6.63 31.67 0.21 -1.51 16 23 C -0.11 -1.62 6.91 31.89 0.22 -1.40 16 24 C -0.09 -1.39 6.63 31.68 0.21 -1.18 16 25 C -0.13 -3.33 6.64 -10.08 -0.07 -3.39 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.25 6.56 -2.39 -0.02 1.24 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.04 1.72 7.26 -2.38 -0.02 1.70 16 35 H 0.06 1.71 7.45 -2.39 -0.02 1.69 16 36 H 0.10 2.55 6.65 -2.39 -0.02 2.53 16 37 H 0.07 2.45 6.32 -2.39 -0.02 2.44 16 38 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 39 H 0.02 1.25 7.89 -2.39 -0.02 1.24 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.77 363.25 5.25 -70.52 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.92 Total: 15.29 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 4.09 Total: -14.21 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.74 Total: -86.15 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.05 Total: -33.76 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -75.77 5.25 -70.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246439905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.414 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds