Wall clock time and date at job start Tue Mar 31 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32997 * 119.99988 * 2 1 4 4 C 1.47096 * 119.99910 * 353.11216 * 3 2 1 5 5 O 1.21620 * 120.00064 * 353.76271 * 4 3 2 6 6 N 1.34779 * 120.00086 * 173.76856 * 4 3 2 7 7 C 1.46500 * 119.99697 * 359.97438 * 6 4 3 8 8 C 1.50698 * 109.47151 * 270.00073 * 7 6 4 9 9 H 1.08000 * 120.00015 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00158 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99954 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00074 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47201 * 59.99558 * 12 10 8 14 14 H 1.48496 * 109.47201 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47141 * 300.00095 * 12 10 8 16 16 C 1.46495 * 120.00035 * 179.97438 * 6 4 3 17 17 C 1.52998 * 109.47316 * 269.99623 * 16 6 4 18 18 C 1.52998 * 109.47640 * 180.02562 * 17 16 6 19 19 C 1.52995 * 109.47476 * 175.00497 * 18 17 16 20 20 C 1.53002 * 109.47013 * 295.00472 * 18 17 16 21 21 C 1.50696 * 119.99841 * 180.02562 * 2 1 3 22 22 C 1.52998 * 117.50132 * 8.62321 * 21 2 1 23 23 C 1.52997 * 117.50122 * 299.99804 * 21 2 1 24 24 H 1.08993 * 109.47372 * 84.53260 * 1 2 3 25 25 H 1.09006 * 109.46946 * 204.53623 * 1 2 3 26 26 H 1.09004 * 109.46715 * 324.52809 * 1 2 3 27 27 H 1.07992 * 119.99700 * 173.11560 * 3 2 1 28 28 H 1.08997 * 109.47378 * 30.00330 * 7 6 4 29 29 H 1.08998 * 109.46945 * 150.00276 * 7 6 4 30 30 H 0.96996 * 120.00137 * 180.02562 * 11 10 8 31 31 H 1.09004 * 109.47353 * 29.99880 * 16 6 4 32 32 H 1.08998 * 109.47128 * 149.99961 * 16 6 4 33 33 H 1.09004 * 109.47119 * 300.00399 * 17 16 6 34 34 H 1.09007 * 109.46844 * 59.99888 * 17 16 6 35 35 H 1.09000 * 109.47139 * 54.99962 * 18 17 16 36 36 H 1.09000 * 109.47373 * 59.99609 * 19 18 17 37 37 H 1.09003 * 109.47212 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.46771 * 299.99631 * 19 18 17 39 39 H 1.09002 * 109.47291 * 59.99230 * 20 18 17 40 40 H 1.08998 * 109.47112 * 180.02562 * 20 18 17 41 41 H 1.09004 * 109.47224 * 299.99591 * 20 18 17 42 42 H 1.09005 * 115.55183 * 154.32629 * 21 2 1 43 43 H 1.09005 * 117.49562 * 359.97438 * 22 21 2 44 44 H 1.08997 * 117.50378 * 145.01740 * 22 21 2 45 45 H 1.09007 * 117.49923 * 214.97893 * 23 21 2 46 46 H 1.08992 * 117.50064 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4445 2.4211 -0.1528 5 8 0.2521 2.4135 -0.3923 6 7 2.0992 3.5924 -0.0274 7 6 3.5354 3.6015 0.2616 8 6 3.7475 3.6122 1.7535 9 1 2.8976 3.6118 2.4198 10 6 5.0267 3.6224 2.2679 11 7 6.0617 3.6224 1.4566 12 14 5.2897 3.6350 4.1173 13 1 4.6730 2.4226 4.7132 14 1 6.7454 3.6443 4.4102 15 1 4.6595 4.8475 4.6986 16 6 1.3747 4.8565 -0.1801 17 6 1.4072 5.2890 -1.6474 18 6 0.6511 6.6095 -1.8068 19 6 0.7888 7.1053 -3.2476 20 6 -0.8281 6.3928 -1.4813 21 6 2.2605 -1.3051 -0.0006 22 6 1.4517 -2.5877 -0.2046 23 6 2.0261 -2.2567 1.1743 24 1 -0.3634 0.0979 -1.0229 25 1 -0.3633 -0.9349 0.4268 26 1 -0.3633 0.8370 0.5964 27 1 3.2461 1.1551 0.1121 28 1 3.9974 2.7111 -0.1647 29 1 3.9885 4.4910 -0.1762 30 1 6.9616 3.6292 1.8185 31 1 0.3403 4.7231 0.1366 32 1 1.8470 5.6226 0.4349 33 1 2.4416 5.4224 -1.9640 34 1 0.9349 4.5229 -2.2624 35 1 1.0680 7.3514 -1.1258 36 1 0.3719 6.3634 -3.9287 37 1 0.2505 8.0463 -3.3611 38 1 1.8427 7.2598 -3.4795 39 1 -0.9262 6.0394 -0.4548 40 1 -1.3668 7.3334 -1.5953 41 1 -1.2451 5.6508 -2.1623 42 1 3.2631 -1.2689 -0.4266 43 1 0.3745 -2.4875 -0.3380 44 1 1.9220 -3.3956 -0.7651 45 1 2.8745 -2.8469 1.5210 46 1 1.3273 -1.9387 1.9479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264081173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:31 Heat of formation + Delta-G solvation = -30.821524 kcal Electronic energy + Delta-G solvation = -22381.976471 eV Core-core repulsion = 19271.543224 eV Total energy + Delta-G solvation = -3110.433247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.96613 -38.94306 -37.78367 -36.38998 -34.54142 -34.01081 -30.88115 -29.13679 -28.24116 -28.00475 -25.46148 -25.00056 -23.56225 -23.17176 -20.91526 -20.37560 -19.07405 -18.49910 -18.12080 -17.16662 -16.45651 -16.36050 -16.11295 -15.78691 -15.40770 -14.74588 -14.60666 -14.44726 -14.18129 -13.95739 -13.77858 -13.56786 -13.53136 -13.10399 -12.85475 -12.83386 -12.71799 -12.54696 -12.40689 -12.26317 -12.15316 -11.98269 -11.94585 -11.77556 -11.57639 -11.53329 -11.42008 -11.31903 -10.66375 -10.34704 -9.85406 -9.29668 -8.20930 -6.36215 0.46188 1.40156 1.40756 1.49113 2.28470 2.43966 2.47318 3.04483 3.08154 3.58244 3.91082 3.93930 3.96398 3.98980 4.07471 4.15569 4.18737 4.31666 4.44085 4.56519 4.68195 4.73428 4.76188 4.79315 4.81756 4.85616 4.90717 4.94150 5.00007 5.02157 5.11224 5.12889 5.16267 5.16900 5.23664 5.27849 5.31505 5.46397 5.49591 5.58752 5.66233 5.68572 5.92318 6.05715 6.58440 6.82456 7.31708 7.45025 8.84101 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.006832 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.088324 B = 4097.149020 C = 6625.405133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.007 4.007 3 C -0.234 4.234 4 C 0.540 3.460 5 O -0.584 6.584 6 N -0.599 5.599 7 C 0.256 3.744 8 C -0.546 4.546 9 H 0.048 0.952 10 C 0.022 3.978 11 N -0.920 5.920 12 Si 0.956 3.044 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.272 1.272 16 C 0.119 3.881 17 C -0.115 4.115 18 C -0.091 4.091 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.164 4.164 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.026 0.974 29 H 0.018 0.982 30 H 0.268 0.732 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 -4.279 -4.964 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.010 4.010 3 C -0.254 4.254 4 C 0.333 3.667 5 O -0.470 6.470 6 N -0.327 5.327 7 C 0.135 3.865 8 C -0.584 4.584 9 H 0.066 0.934 10 C -0.178 4.178 11 N -0.559 5.559 12 Si 0.781 3.219 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.197 1.197 16 C -0.004 4.004 17 C -0.154 4.154 18 C -0.110 4.110 19 C -0.198 4.198 20 C -0.200 4.200 21 C -0.172 4.172 22 C -0.187 4.187 23 C -0.201 4.201 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.371 -4.232 -5.087 11.472 hybrid contribution 0.894 0.324 1.000 1.380 sum -8.477 -3.908 -4.087 10.190 Atomic orbital electron populations 1.20999 0.90490 1.02238 1.02835 1.21984 0.96343 0.92733 0.89894 1.22427 1.00645 0.92064 1.10304 1.18716 0.86290 0.85161 0.76565 1.90608 1.15605 1.88183 1.52573 1.48126 1.11117 1.05563 1.67940 1.19032 0.75489 0.96938 0.95037 1.21629 0.92237 1.51909 0.92646 0.93369 1.25650 0.95447 0.94306 1.02440 1.70002 0.98913 1.50464 1.36547 0.85637 0.77241 0.78885 0.80121 1.19776 1.20290 1.19666 1.21451 0.96785 0.85086 0.97068 1.21877 1.00115 0.97739 0.95651 1.21054 0.95974 0.95547 0.98456 1.21788 1.01814 1.01334 0.94872 1.21834 0.95240 1.01850 1.01071 1.21260 1.00433 0.88487 1.07016 1.23166 1.00480 0.96206 0.98872 1.23057 1.04106 1.01162 0.91755 0.90842 0.90330 0.91787 0.86463 0.95600 0.96389 0.92256 0.91047 0.91312 0.92876 0.93263 0.90811 0.92943 0.91050 0.92848 0.93518 0.91039 0.93319 0.87034 0.87437 0.86393 0.86993 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.43 7.91 71.24 0.56 -2.87 16 2 C -0.01 -0.26 5.81 -17.62 -0.10 -0.36 16 3 C -0.23 -9.73 8.89 23.43 0.21 -9.52 16 4 C 0.54 24.32 7.47 86.57 0.65 24.96 16 5 O -0.58 -26.59 12.86 -4.09 -0.05 -26.64 16 6 N -0.60 -27.25 2.46 -830.46 -2.04 -29.29 16 7 C 0.26 13.04 4.92 85.63 0.42 13.46 16 8 C -0.55 -29.82 9.39 25.60 0.24 -29.58 16 9 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 10 C 0.02 1.18 5.46 84.66 0.46 1.65 16 11 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 12 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 C 0.12 4.68 5.16 86.38 0.45 5.13 16 17 C -0.12 -3.89 5.01 30.59 0.15 -3.73 16 18 C -0.09 -2.41 2.92 -10.80 -0.03 -2.44 16 19 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 20 C -0.14 -3.55 8.95 71.98 0.64 -2.91 16 21 C -0.15 -4.19 6.01 -11.54 -0.07 -4.26 16 22 C -0.15 -2.95 9.76 30.59 0.30 -2.65 16 23 C -0.16 -3.65 10.10 30.59 0.31 -3.34 16 24 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 25 H 0.08 1.92 6.31 -2.38 -0.02 1.91 16 26 H 0.06 2.37 6.12 -2.38 -0.01 2.35 16 27 H 0.12 5.27 6.17 -2.91 -0.02 5.25 16 28 H 0.03 1.38 6.02 -2.39 -0.01 1.37 16 29 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.07 2.82 5.84 -2.39 -0.01 2.80 16 32 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.05 1.26 6.57 -2.39 -0.02 1.25 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 43 H 0.11 1.95 6.42 -2.38 -0.02 1.93 16 44 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -61.61 367.85 6.00 -55.61 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.93 Total: 26.01 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.85 Total: -18.94 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.75 Total: -80.96 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -61.61 6.00 -55.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264081173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.790 kcal (2) G-P(sol) polarization free energy of solvation -61.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds