Wall clock time and date at job start Tue Mar 31 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32996 * 119.99584 * 2 1 4 4 C 1.47099 * 120.00260 * 353.15397 * 3 2 1 5 5 O 1.21609 * 120.00283 * 353.84990 * 4 3 2 6 6 N 1.34778 * 119.99871 * 173.57891 * 4 3 2 7 7 C 1.46504 * 120.00098 * 180.27551 * 6 4 3 8 8 C 1.50696 * 109.47382 * 89.99475 * 7 6 4 9 9 H 1.08003 * 120.00178 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00163 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99517 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 119.99988 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47421 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47181 * 119.99923 * 12 10 8 15 15 H 1.48500 * 109.47074 * 239.99727 * 12 10 8 16 16 C 1.46499 * 120.00207 * 0.26918 * 6 4 3 17 17 C 1.52997 * 109.46961 * 90.00320 * 16 6 4 18 18 C 1.52997 * 109.47138 * 60.00238 * 17 16 6 19 19 C 1.53004 * 109.46964 * 180.02562 * 17 16 6 20 20 C 1.53005 * 109.47035 * 299.99843 * 17 16 6 21 21 C 1.50697 * 120.00066 * 180.02562 * 2 1 3 22 22 C 1.52998 * 117.49834 * 8.73941 * 21 2 1 23 23 C 1.53003 * 117.49903 * 300.07984 * 21 2 1 24 24 H 1.08997 * 109.47510 * 84.51583 * 1 2 3 25 25 H 1.09003 * 109.47199 * 204.52097 * 1 2 3 26 26 H 1.09006 * 109.46966 * 324.51194 * 1 2 3 27 27 H 1.08003 * 119.99896 * 173.14805 * 3 2 1 28 28 H 1.08997 * 109.46785 * 209.99805 * 7 6 4 29 29 H 1.09007 * 109.46664 * 329.99522 * 7 6 4 30 30 H 0.97003 * 119.99393 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.47116 * 210.00481 * 16 6 4 32 32 H 1.09001 * 109.47182 * 330.00247 * 16 6 4 33 33 H 1.09000 * 109.47004 * 60.00199 * 18 17 16 34 34 H 1.09000 * 109.46998 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.47009 * 299.99432 * 18 17 16 36 36 H 1.09001 * 109.47379 * 59.99805 * 19 17 16 37 37 H 1.09000 * 109.46901 * 179.97438 * 19 17 16 38 38 H 1.08998 * 109.46915 * 300.00040 * 19 17 16 39 39 H 1.08997 * 109.46855 * 60.00558 * 20 17 16 40 40 H 1.08997 * 109.46765 * 179.97438 * 20 17 16 41 41 H 1.08994 * 109.47501 * 299.99910 * 20 17 16 42 42 H 1.09000 * 115.54630 * 154.41346 * 21 2 1 43 43 H 1.08997 * 117.49897 * 0.02562 * 22 21 2 44 44 H 1.09004 * 117.49136 * 145.02203 * 22 21 2 45 45 H 1.08992 * 117.50193 * 214.98559 * 23 21 2 46 46 H 1.09004 * 117.49146 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4442 2.4212 -0.1518 5 8 0.2515 2.4138 -0.3891 6 7 2.0983 3.5925 -0.0227 7 6 1.3724 4.8568 -0.1679 8 6 0.8464 5.2913 1.1757 9 1 1.0343 4.6864 2.0506 10 6 0.1251 6.4610 1.2883 11 7 -0.1041 7.1972 0.2230 12 14 -0.5275 6.9991 2.9537 13 1 -0.1368 6.0035 3.9839 14 1 0.0440 8.3241 3.3048 15 1 -2.0081 7.0981 2.8967 16 6 3.5351 3.6015 0.2631 17 6 4.3167 3.6036 -1.0522 18 6 3.9499 4.8492 -1.8614 19 6 5.8173 3.6124 -0.7537 20 6 3.9646 2.3507 -1.8566 21 6 2.2605 -1.3051 -0.0006 22 6 1.4521 -2.5874 -0.2074 23 6 2.0247 -2.2575 1.1734 24 1 -0.3634 0.0982 -1.0229 25 1 -0.3634 -0.9350 0.4265 26 1 -0.3633 0.8368 0.5966 27 1 3.2461 1.1552 0.1116 28 1 2.0460 5.6196 -0.5584 29 1 0.5393 4.7202 -0.8575 30 1 -0.6112 8.0203 0.3023 31 1 3.7860 4.4941 0.8363 32 1 3.7965 2.7142 0.8397 33 1 4.2008 5.7417 -1.2882 34 1 4.5063 4.8504 -2.7986 35 1 2.8809 4.8425 -2.0741 36 1 6.0784 2.7249 -0.1773 37 1 6.3741 3.6135 -1.6907 38 1 6.0685 4.5048 -0.1803 39 1 2.8956 2.3440 -2.0693 40 1 4.5210 2.3525 -2.7939 41 1 4.2259 1.4634 -1.2802 42 1 3.2637 -1.2684 -0.4253 43 1 0.3753 -2.4871 -0.3434 44 1 1.9237 -3.3947 -0.7678 45 1 2.8725 -2.8478 1.5208 46 1 1.3248 -1.9398 1.9463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264199727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:18 Heat of formation + Delta-G solvation = -3.718852 kcal Electronic energy + Delta-G solvation = -23129.131952 eV Core-core repulsion = 20019.873965 eV Total energy + Delta-G solvation = -3109.257987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67244 -37.98827 -36.88296 -33.98897 -32.71737 -32.29849 -28.59551 -27.25123 -26.86181 -26.60154 -25.40634 -23.98438 -22.46543 -22.14937 -19.30791 -18.80060 -17.32442 -16.66903 -16.49299 -15.79950 -15.00618 -14.89764 -14.43585 -14.20667 -13.81927 -13.53865 -13.44286 -12.82763 -12.59539 -12.49285 -12.25999 -12.13625 -11.87276 -11.74916 -11.42066 -11.32793 -11.25187 -11.19939 -11.04728 -10.85218 -10.83259 -10.77719 -10.51930 -10.47394 -10.35159 -10.13350 -10.00982 -9.48791 -8.61556 -8.55028 -8.38020 -7.47094 -5.99485 -4.03398 1.78357 3.31891 3.39494 3.43761 3.78543 4.02044 4.16067 4.47947 4.64240 4.80782 4.89780 5.04644 5.10664 5.12280 5.18631 5.34139 5.40334 5.50636 5.54290 5.72368 5.74187 5.77112 5.83796 5.88611 5.98324 6.00557 6.03667 6.05018 6.15706 6.19694 6.23271 6.31345 6.36504 6.46653 6.47450 6.64729 6.77411 6.84518 6.89746 7.23963 7.52655 7.66928 7.98306 8.31113 8.56662 8.97308 9.23405 9.61615 11.08168 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.005921 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.763686 B = 4727.645942 C = 6112.165449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.030 4.030 3 C -0.212 4.212 4 C 0.537 3.463 5 O -0.542 6.542 6 N -0.589 5.589 7 C 0.243 3.757 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.122 3.878 17 C -0.088 4.088 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.124 4.124 22 C -0.175 4.175 23 C -0.170 4.170 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.126 0.874 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 -14.571 -1.805 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.032 4.032 3 C -0.233 4.233 4 C 0.326 3.674 5 O -0.422 6.422 6 N -0.319 5.319 7 C 0.124 3.876 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.003 4.003 17 C -0.089 4.089 18 C -0.198 4.198 19 C -0.194 4.194 20 C -0.198 4.198 21 C -0.142 4.142 22 C -0.212 4.212 23 C -0.207 4.207 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.143 0.857 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.589 -14.352 -1.982 17.374 hybrid contribution -0.144 0.474 0.910 1.036 sum 9.444 -13.878 -1.072 16.821 Atomic orbital electron populations 1.21107 0.91016 1.01923 1.03501 1.21636 0.96023 0.92028 0.93482 1.22819 1.00325 0.92804 1.07347 1.18285 0.86805 0.84036 0.78229 1.90713 1.14889 1.87214 1.49392 1.48041 1.07811 1.07608 1.68434 1.19371 0.92201 0.78638 0.97401 1.21513 1.33918 1.06377 0.94314 0.92559 1.24916 0.95970 0.96467 0.96747 1.69946 1.40595 1.14631 1.28293 0.86487 0.78780 0.78270 0.84142 1.19869 1.21042 1.20951 1.21515 0.81319 1.02434 0.94990 1.21010 0.94954 0.96280 0.96688 1.21944 1.02611 0.96579 0.98667 1.21801 0.94872 1.01561 1.01208 1.22058 1.01961 0.96654 0.99170 1.21218 0.99811 0.89019 1.04124 1.23047 1.00570 0.97930 0.99609 1.22972 1.03580 1.02380 0.91809 0.90750 0.93497 0.88771 0.85683 0.94288 0.94144 0.92895 0.90177 0.91648 0.92504 0.93718 0.91306 0.92968 0.92848 0.92516 0.92152 0.93339 0.92729 0.87089 0.88074 0.88648 0.88576 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 7.91 36.01 0.28 -1.61 16 2 C -0.03 -0.44 5.81 -101.17 -0.59 -1.03 16 3 C -0.21 -3.47 6.88 -37.81 -0.26 -3.73 16 4 C 0.54 11.38 6.06 -12.67 -0.08 11.30 16 5 O -0.54 -13.47 12.85 5.27 0.07 -13.41 16 6 N -0.59 -12.52 1.98 -176.46 -0.35 -12.87 16 7 C 0.24 6.32 4.07 -5.19 -0.02 6.30 16 8 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 12 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 16 C 0.12 2.05 4.51 -4.04 -0.02 2.03 16 17 C -0.09 -1.25 0.84 -154.51 -0.13 -1.38 16 18 C -0.14 -2.23 7.23 37.16 0.27 -1.97 16 19 C -0.14 -1.55 8.47 37.16 0.31 -1.24 16 20 C -0.14 -1.93 6.88 37.16 0.26 -1.67 16 21 C -0.12 -1.40 6.00 -91.77 -0.55 -1.95 16 22 C -0.17 -1.68 9.77 -26.69 -0.26 -1.94 16 23 C -0.17 -1.66 10.10 -26.69 -0.27 -1.93 16 24 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 25 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 26 H 0.09 1.82 6.11 -51.93 -0.32 1.50 16 27 H 0.13 1.75 4.35 -52.48 -0.23 1.52 16 28 H 0.04 1.01 6.05 -51.93 -0.31 0.70 16 29 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.97 6.17 -51.93 -0.32 0.65 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.30 5.99 -51.93 -0.31 0.99 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.99 6.02 -51.93 -0.31 0.68 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.66 6.09 -51.93 -0.32 0.34 16 42 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 1.00 6.42 -51.93 -0.33 0.67 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.61 352.89 -8.49 -40.11 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.77 Total: 2.13 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.47 Total: -12.39 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.39 Total: -38.83 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.61 -8.49 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264199727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.388 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds