Wall clock time and date at job start Tue Mar 31 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32996 * 119.99584 * 2 1 4 4 C 1.47099 * 120.00260 * 353.15397 * 3 2 1 5 5 O 1.21609 * 120.00283 * 353.84990 * 4 3 2 6 6 N 1.34778 * 119.99871 * 173.57891 * 4 3 2 7 7 C 1.46504 * 120.00098 * 180.27551 * 6 4 3 8 8 C 1.50696 * 109.47382 * 89.99475 * 7 6 4 9 9 H 1.08003 * 120.00178 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00163 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99517 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 119.99988 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47421 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47181 * 119.99923 * 12 10 8 15 15 H 1.48500 * 109.47074 * 239.99727 * 12 10 8 16 16 C 1.46499 * 120.00207 * 0.26918 * 6 4 3 17 17 C 1.52997 * 109.46961 * 90.00320 * 16 6 4 18 18 C 1.52997 * 109.47138 * 60.00238 * 17 16 6 19 19 C 1.53004 * 109.46964 * 180.02562 * 17 16 6 20 20 C 1.53005 * 109.47035 * 299.99843 * 17 16 6 21 21 C 1.50697 * 120.00066 * 180.02562 * 2 1 3 22 22 C 1.52998 * 117.49834 * 8.73941 * 21 2 1 23 23 C 1.53003 * 117.49903 * 300.07984 * 21 2 1 24 24 H 1.08997 * 109.47510 * 84.51583 * 1 2 3 25 25 H 1.09003 * 109.47199 * 204.52097 * 1 2 3 26 26 H 1.09006 * 109.46966 * 324.51194 * 1 2 3 27 27 H 1.08003 * 119.99896 * 173.14805 * 3 2 1 28 28 H 1.08997 * 109.46785 * 209.99805 * 7 6 4 29 29 H 1.09007 * 109.46664 * 329.99522 * 7 6 4 30 30 H 0.97003 * 119.99393 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.47116 * 210.00481 * 16 6 4 32 32 H 1.09001 * 109.47182 * 330.00247 * 16 6 4 33 33 H 1.09000 * 109.47004 * 60.00199 * 18 17 16 34 34 H 1.09000 * 109.46998 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.47009 * 299.99432 * 18 17 16 36 36 H 1.09001 * 109.47379 * 59.99805 * 19 17 16 37 37 H 1.09000 * 109.46901 * 179.97438 * 19 17 16 38 38 H 1.08998 * 109.46915 * 300.00040 * 19 17 16 39 39 H 1.08997 * 109.46855 * 60.00558 * 20 17 16 40 40 H 1.08997 * 109.46765 * 179.97438 * 20 17 16 41 41 H 1.08994 * 109.47501 * 299.99910 * 20 17 16 42 42 H 1.09000 * 115.54630 * 154.41346 * 21 2 1 43 43 H 1.08997 * 117.49897 * 0.02562 * 22 21 2 44 44 H 1.09004 * 117.49136 * 145.02203 * 22 21 2 45 45 H 1.08992 * 117.50193 * 214.98559 * 23 21 2 46 46 H 1.09004 * 117.49146 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4442 2.4212 -0.1518 5 8 0.2515 2.4138 -0.3891 6 7 2.0983 3.5925 -0.0227 7 6 1.3724 4.8568 -0.1679 8 6 0.8464 5.2913 1.1757 9 1 1.0343 4.6864 2.0506 10 6 0.1251 6.4610 1.2883 11 7 -0.1041 7.1972 0.2230 12 14 -0.5275 6.9991 2.9537 13 1 -0.1368 6.0035 3.9839 14 1 0.0440 8.3241 3.3048 15 1 -2.0081 7.0981 2.8967 16 6 3.5351 3.6015 0.2631 17 6 4.3167 3.6036 -1.0522 18 6 3.9499 4.8492 -1.8614 19 6 5.8173 3.6124 -0.7537 20 6 3.9646 2.3507 -1.8566 21 6 2.2605 -1.3051 -0.0006 22 6 1.4521 -2.5874 -0.2074 23 6 2.0247 -2.2575 1.1734 24 1 -0.3634 0.0982 -1.0229 25 1 -0.3634 -0.9350 0.4265 26 1 -0.3633 0.8368 0.5966 27 1 3.2461 1.1552 0.1116 28 1 2.0460 5.6196 -0.5584 29 1 0.5393 4.7202 -0.8575 30 1 -0.6112 8.0203 0.3023 31 1 3.7860 4.4941 0.8363 32 1 3.7965 2.7142 0.8397 33 1 4.2008 5.7417 -1.2882 34 1 4.5063 4.8504 -2.7986 35 1 2.8809 4.8425 -2.0741 36 1 6.0784 2.7249 -0.1773 37 1 6.3741 3.6135 -1.6907 38 1 6.0685 4.5048 -0.1803 39 1 2.8956 2.3440 -2.0693 40 1 4.5210 2.3525 -2.7939 41 1 4.2259 1.4634 -1.2802 42 1 3.2637 -1.2684 -0.4253 43 1 0.3753 -2.4871 -0.3434 44 1 1.9237 -3.3947 -0.7678 45 1 2.8725 -2.8478 1.5208 46 1 1.3248 -1.9398 1.9463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264199727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:17 Heat of formation + Delta-G solvation = -20.918481 kcal Electronic energy + Delta-G solvation = -23129.877784 eV Core-core repulsion = 20019.873965 eV Total energy + Delta-G solvation = -3110.003819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19868 -39.02373 -38.23864 -35.75122 -34.28970 -33.99827 -30.30590 -28.73429 -28.08562 -27.79704 -26.89636 -25.55844 -23.77279 -23.15317 -20.73051 -19.98481 -18.76208 -18.52994 -18.10037 -17.10202 -16.67427 -16.37174 -15.94192 -15.37930 -15.16975 -14.92863 -14.66445 -14.39043 -14.14844 -13.89410 -13.77675 -13.54372 -13.17198 -12.95265 -12.94073 -12.72765 -12.53447 -12.51921 -12.49204 -12.32375 -12.19600 -12.05054 -11.96311 -11.78656 -11.64687 -11.51818 -11.35482 -11.23177 -10.62636 -10.26874 -9.81498 -9.21482 -8.20814 -6.35933 0.48786 1.33838 1.36148 1.48171 2.30743 2.50695 2.53091 3.07111 3.07732 3.58707 3.85127 3.92276 3.94613 4.00617 4.09309 4.17545 4.23562 4.32776 4.53293 4.61143 4.69226 4.77944 4.79205 4.82658 4.85587 4.94501 4.97146 5.02883 5.04603 5.10473 5.13027 5.18431 5.20419 5.26178 5.26203 5.30830 5.38042 5.48996 5.54356 5.59972 5.62911 5.69500 5.94696 6.11146 6.72897 6.91128 7.30066 7.59315 8.85194 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.005921 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.763686 B = 4727.645942 C = 6112.165449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.010 4.010 3 C -0.227 4.227 4 C 0.526 3.474 5 O -0.595 6.595 6 N -0.594 5.594 7 C 0.265 3.735 8 C -0.541 4.541 9 H 0.048 0.952 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.269 1.269 14 H -0.268 1.268 15 H -0.282 1.282 16 C 0.116 3.884 17 C -0.082 4.082 18 C -0.138 4.138 19 C -0.129 4.129 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.167 4.167 23 C -0.160 4.160 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.156 0.844 28 H 0.032 0.968 29 H -0.011 1.011 30 H 0.266 0.734 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.133 0.867 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.956 -17.143 -0.665 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.012 4.012 3 C -0.247 4.247 4 C 0.319 3.681 5 O -0.480 6.480 6 N -0.322 5.322 7 C 0.143 3.857 8 C -0.579 4.579 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.193 1.193 14 H -0.193 1.193 15 H -0.207 1.207 16 C -0.006 4.006 17 C -0.083 4.083 18 C -0.196 4.196 19 C -0.187 4.187 20 C -0.192 4.192 21 C -0.156 4.156 22 C -0.204 4.204 23 C -0.197 4.197 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.174 0.826 28 H 0.050 0.950 29 H 0.007 0.993 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.151 0.849 43 H 0.112 0.888 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.280 -16.935 -0.838 20.936 hybrid contribution -1.042 1.223 0.501 1.683 sum 11.239 -15.712 -0.337 19.320 Atomic orbital electron populations 1.21007 0.92507 1.01727 1.02219 1.21963 0.95369 0.93711 0.90178 1.22620 1.01298 0.90378 1.10383 1.19161 0.86514 0.85477 0.76966 1.90684 1.17373 1.88065 1.51839 1.47991 1.09641 1.06124 1.68490 1.18763 0.90859 0.80824 0.95215 1.21774 1.34629 1.06706 0.94837 0.93359 1.25826 0.95980 0.96429 1.00806 1.70066 1.41098 1.15085 1.30559 0.85400 0.77950 0.78396 0.79248 1.19315 1.19297 1.20740 1.21814 0.78778 1.03113 0.96928 1.20982 0.96882 0.95645 0.94835 1.21901 1.00146 0.97456 1.00072 1.21746 0.91824 1.02672 1.02438 1.22002 0.99869 0.97047 1.00307 1.21267 1.00629 0.87297 1.06436 1.23166 1.00229 0.97194 0.99814 1.23078 1.04119 1.01154 0.91318 0.91941 0.90508 0.92756 0.82645 0.94984 0.99315 0.92499 0.91484 0.88822 0.93532 0.91463 0.95479 0.90720 0.91253 0.92618 0.95702 0.91556 0.90345 0.84892 0.88767 0.86261 0.86073 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 7.91 71.24 0.56 -3.28 16 2 C -0.01 -0.29 5.81 -17.62 -0.10 -0.40 16 3 C -0.23 -7.26 6.88 23.43 0.16 -7.10 16 4 C 0.53 23.47 6.06 86.57 0.52 23.99 16 5 O -0.60 -32.07 12.85 -4.06 -0.05 -32.12 16 6 N -0.59 -26.60 1.98 -830.44 -1.65 -28.24 16 7 C 0.26 14.84 4.07 85.63 0.35 15.19 16 8 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 9 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 10 C 0.01 0.49 5.46 84.66 0.46 0.95 16 11 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 12 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 16 C 0.12 3.90 4.51 86.38 0.39 4.29 16 17 C -0.08 -2.25 0.84 -52.18 -0.04 -2.29 16 18 C -0.14 -4.51 7.23 71.98 0.52 -3.99 16 19 C -0.13 -2.50 8.47 71.98 0.61 -1.89 16 20 C -0.14 -3.44 6.88 71.98 0.50 -2.95 16 21 C -0.14 -2.63 6.00 -11.54 -0.07 -2.70 16 22 C -0.17 -2.58 9.77 30.62 0.30 -2.28 16 23 C -0.16 -2.47 10.10 30.62 0.31 -2.16 16 24 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 25 H 0.08 1.96 6.31 -2.39 -0.02 1.94 16 26 H 0.05 2.23 6.11 -2.38 -0.01 2.22 16 27 H 0.16 3.90 4.35 -2.91 -0.01 3.89 16 28 H 0.03 1.81 6.05 -2.39 -0.01 1.80 16 29 H -0.01 -0.74 7.42 -2.38 -0.02 -0.75 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.09 2.59 6.17 -2.39 -0.01 2.57 16 33 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.03 1.08 5.99 -2.39 -0.01 1.07 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.02 0.81 6.02 -2.39 -0.01 0.79 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.60 6.09 -2.39 -0.01 1.59 16 42 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.09 1.60 6.42 -2.39 -0.02 1.58 16 44 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 46 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.25 352.89 6.27 -68.98 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.95 Total: 17.15 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.71 Total: -16.77 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.36 Total: -85.57 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.25 6.27 -68.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264199727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.060 kcal (2) G-P(sol) polarization free energy of solvation -75.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds