Wall clock time and date at job start Tue Mar 31 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 C 1.53002 * 109.47016 * 240.00139 * 2 1 3 5 5 C 1.52996 * 109.47205 * 120.00368 * 2 1 3 6 6 N 1.46496 * 109.47352 * 46.18079 * 5 2 1 7 7 C 1.46498 * 119.99959 * 81.91360 * 6 5 2 8 8 C 1.50704 * 109.47420 * 261.77152 * 7 6 5 9 9 H 1.07994 * 119.99556 * 3.60690 * 8 7 6 10 10 C 1.37877 * 119.99694 * 183.60170 * 8 7 6 11 11 N 1.31512 * 120.00612 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99507 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47070 * 60.00222 * 12 10 8 14 14 H 1.48495 * 109.46863 * 300.00095 * 12 10 8 15 15 H 1.48497 * 109.46782 * 180.02562 * 12 10 8 16 16 C 1.34777 * 120.00276 * 261.91841 * 6 5 2 17 17 O 1.21284 * 120.00355 * 184.05642 * 16 6 5 18 18 C 1.50705 * 119.99937 * 4.05514 * 16 6 5 19 19 H 1.08998 * 109.64010 * 39.30949 * 18 16 6 20 20 C 1.53021 * 109.64305 * 278.88706 * 18 16 6 21 21 C 1.50064 * 110.14946 * 190.87525 * 20 18 16 22 22 C 1.29446 * 124.07170 * 17.13915 * 21 20 18 23 23 C 1.50062 * 124.07626 * 359.49482 * 22 21 20 24 24 C 1.52971 * 110.28872 * 17.03474 * 23 22 21 25 25 H 1.08998 * 109.46891 * 307.66364 * 1 2 3 26 26 H 1.09006 * 109.46978 * 67.66040 * 1 2 3 27 27 H 1.08999 * 109.46844 * 187.65737 * 1 2 3 28 28 H 1.08996 * 109.47374 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47279 * 300.00273 * 3 2 1 30 30 H 1.08998 * 109.46958 * 59.99845 * 3 2 1 31 31 H 1.09004 * 109.47162 * 317.12612 * 4 2 1 32 32 H 1.09003 * 109.46885 * 77.12360 * 4 2 1 33 33 H 1.08992 * 109.47464 * 197.12396 * 4 2 1 34 34 H 1.09004 * 109.47119 * 286.18320 * 5 2 1 35 35 H 1.08994 * 109.47144 * 166.18635 * 5 2 1 36 36 H 1.09001 * 109.47079 * 141.77488 * 7 6 5 37 37 H 1.08995 * 109.46799 * 21.77520 * 7 6 5 38 38 H 0.97005 * 119.99640 * 359.97438 * 11 10 8 39 39 H 1.09000 * 109.35485 * 311.08886 * 20 18 16 40 40 H 1.09009 * 109.35804 * 70.66911 * 20 18 16 41 41 H 1.07997 * 117.96635 * 197.10711 * 21 20 18 42 42 H 1.07998 * 117.95958 * 179.53068 * 22 21 20 43 43 H 1.09006 * 109.35778 * 137.36856 * 23 22 21 44 44 H 1.08995 * 109.36415 * 257.08828 * 23 22 21 45 45 H 1.09003 * 109.79154 * 191.07793 * 24 23 22 46 46 H 1.08998 * 109.47652 * 70.45271 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.3013 -1.9740 1.4256 7 6 1.6914 -3.1671 0.6704 8 6 0.8005 -3.3114 -0.5365 9 1 0.0601 -2.5560 -0.7544 10 6 0.9307 -4.4077 -1.3624 11 7 1.8321 -5.3278 -1.0967 12 14 -0.1732 -4.5862 -2.8587 13 1 0.0308 -3.4278 -3.7653 14 1 -1.5924 -4.6308 -2.4242 15 1 0.1643 -5.8420 -3.5758 16 6 0.2626 -2.0288 2.2827 17 8 -0.3025 -3.0828 2.4842 18 6 -0.1968 -0.7802 2.9908 19 1 -0.1513 0.0668 2.3064 20 6 0.7030 -0.5138 4.1995 21 6 0.1073 0.5613 5.0604 22 6 -1.1285 0.9411 4.9951 23 6 -2.1353 0.3669 4.0419 24 6 -1.6370 -0.9676 3.4844 25 1 -0.3633 0.6279 0.8135 26 1 -0.3633 0.3906 -0.9506 27 1 -0.3633 -1.0185 0.1369 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.4511 -1.6236 -1.4138 32 1 1.9452 -0.0630 -2.1129 33 1 3.0870 -0.9909 -1.1112 34 1 1.8911 -0.0856 2.1220 35 1 3.1020 -0.9387 1.1350 36 1 1.5896 -4.0478 1.3044 37 1 2.7278 -3.0697 0.3474 38 1 2.4056 -5.2349 -0.3199 39 1 0.8048 -1.4290 4.7828 40 1 1.6871 -0.1964 3.8544 41 1 0.7493 1.0481 5.7795 42 1 -1.4551 1.7200 5.6681 43 1 -3.0793 0.2110 4.5641 44 1 -2.2894 1.0623 3.2169 45 1 -2.2708 -1.2807 2.6547 46 1 -1.6594 -1.7213 4.2714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264235565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:55 Heat of formation + Delta-G solvation = -37.953033 kcal Electronic energy + Delta-G solvation = -24058.852880 eV Core-core repulsion = 20948.110388 eV Total energy + Delta-G solvation = -3110.742493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14546 -37.74524 -36.71880 -33.87540 -32.67146 -31.12992 -30.72182 -27.56514 -27.01427 -26.48122 -25.25600 -23.70556 -23.08628 -21.87670 -19.19078 -18.18464 -17.76807 -16.97629 -16.45546 -15.90616 -15.32256 -14.50095 -14.07024 -13.85514 -13.67852 -13.53878 -13.50139 -13.16900 -13.05409 -12.68757 -12.32866 -12.19280 -12.14127 -11.99838 -11.83599 -11.48088 -11.11783 -11.04788 -10.82841 -10.70970 -10.55461 -10.52824 -10.44190 -10.26765 -10.11013 -10.00712 -9.86655 -9.00420 -8.96012 -8.77907 -8.34836 -7.52176 -6.34928 -4.03855 2.25951 3.40420 3.44026 3.47643 3.63631 3.91942 4.53868 4.71101 4.80576 4.97799 5.12639 5.20050 5.27595 5.32024 5.35140 5.39251 5.48378 5.55312 5.60662 5.65957 5.76831 5.84366 5.90668 5.92976 5.99700 6.03440 6.08076 6.18458 6.24349 6.31378 6.33319 6.47265 6.61011 6.64213 6.65500 6.72187 6.84839 6.87964 6.92199 7.17725 7.50956 7.53898 8.07066 8.37242 8.47381 8.80023 9.11311 9.61203 11.00947 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.006329 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.220989 B = 4422.739000 C = 4983.699959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.170 4.170 5 C 0.118 3.882 6 N -0.591 5.591 7 C 0.238 3.762 8 C -0.593 4.593 9 H 0.062 0.938 10 C 0.020 3.980 11 N -0.908 5.908 12 Si 1.063 2.937 13 H -0.287 1.287 14 H -0.288 1.288 15 H -0.282 1.282 16 C 0.515 3.485 17 O -0.539 6.539 18 C -0.119 4.119 19 H 0.101 0.899 20 C -0.083 4.083 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.099 4.099 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.121 0.879 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.020 0.980 38 H 0.268 0.732 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 15.380 7.726 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.196 4.196 4 C -0.227 4.227 5 C -0.006 4.006 6 N -0.322 5.322 7 C 0.118 3.882 8 C -0.631 4.631 9 H 0.080 0.920 10 C -0.184 4.184 11 N -0.544 5.544 12 Si 0.891 3.109 13 H -0.213 1.213 14 H -0.214 1.214 15 H -0.207 1.207 16 C 0.302 3.698 17 O -0.416 6.416 18 C -0.141 4.141 19 H 0.119 0.881 20 C -0.120 4.120 21 C -0.169 4.169 22 C -0.174 4.174 23 C -0.129 4.129 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.317 13.796 6.533 15.439 hybrid contribution 0.521 1.267 1.273 1.870 sum -1.796 15.062 7.806 17.060 Atomic orbital electron populations 1.22155 0.94987 1.03259 1.00182 1.20839 0.96027 0.94195 0.96873 1.21884 1.00635 0.96003 1.01098 1.22519 1.02026 1.03640 0.94492 1.21717 0.95977 0.85926 0.97022 1.47996 1.31015 1.11868 1.41307 1.19305 0.95227 0.82495 0.91157 1.22195 1.21224 1.09524 1.10205 0.91996 1.25710 0.98413 0.92231 1.02084 1.70790 1.19985 1.34843 1.28759 0.83628 0.75577 0.76289 0.75416 1.21333 1.21432 1.20747 1.20226 0.80246 0.89742 0.79634 1.90662 1.55253 1.31555 1.64142 1.21691 0.96707 0.98176 0.97494 0.88124 1.20449 0.98348 0.98146 0.95027 1.22007 0.96392 0.98607 0.99930 1.22060 0.95142 1.00426 0.99781 1.20481 0.97594 0.96899 0.97877 1.21384 0.94367 0.96614 1.01288 0.93674 0.93363 0.90295 0.93018 0.92853 0.93333 0.86099 0.94807 0.94024 0.91168 0.91435 0.95541 0.96165 0.92195 0.90454 0.90605 0.87931 0.88164 0.90991 0.90996 0.91081 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 6.97 37.16 0.26 -2.19 16 2 C -0.08 -1.23 0.87 -154.51 -0.13 -1.37 16 3 C -0.14 -1.74 8.35 37.16 0.31 -1.43 16 4 C -0.17 -3.12 7.94 37.16 0.30 -2.83 16 5 C 0.12 1.92 4.47 -4.05 -0.02 1.90 16 6 N -0.59 -12.09 1.73 -175.06 -0.30 -12.40 16 7 C 0.24 5.94 3.85 -5.19 -0.02 5.92 16 8 C -0.59 -15.85 6.33 -34.44 -0.22 -16.07 16 9 H 0.06 1.65 4.93 -52.49 -0.26 1.39 16 10 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 11 N -0.91 -27.09 13.65 55.43 0.76 -26.33 16 12 Si 1.06 25.17 29.90 -169.99 -5.08 20.08 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.51 10.60 5.30 -10.98 -0.06 10.54 16 17 O -0.54 -13.63 15.88 5.55 0.09 -13.55 16 18 C -0.12 -1.85 1.51 -91.55 -0.14 -1.99 16 19 H 0.10 1.46 4.01 -51.93 -0.21 1.26 16 20 C -0.08 -1.09 5.21 -28.18 -0.15 -1.24 16 21 C -0.15 -1.70 9.81 -35.90 -0.35 -2.05 16 22 C -0.16 -1.68 9.81 -35.90 -0.35 -2.04 16 23 C -0.09 -1.04 6.11 -28.21 -0.17 -1.21 16 24 C -0.10 -1.46 4.67 -26.54 -0.12 -1.59 16 25 H 0.04 0.64 5.90 -51.93 -0.31 0.34 16 26 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.08 1.58 4.06 -51.93 -0.21 1.37 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.12 2.68 3.65 -51.93 -0.19 2.49 16 32 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 33 H 0.04 0.75 7.83 -51.93 -0.41 0.35 16 34 H 0.07 0.97 4.37 -51.93 -0.23 0.74 16 35 H 0.07 1.08 7.70 -51.93 -0.40 0.68 16 36 H 0.03 0.75 7.35 -51.93 -0.38 0.37 16 37 H 0.02 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.27 7.97 7.21 -40.82 -0.29 7.68 16 39 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.08 0.92 6.25 -51.92 -0.32 0.60 16 41 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -30.84 337.60 -7.89 -38.73 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.47 Total: 3.53 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.97 Total: -15.15 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.45 Total: -38.73 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.84 -7.89 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264235565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.779 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds