Wall clock time and date at job start Tue Mar 31 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 C 1.53002 * 109.47016 * 240.00139 * 2 1 3 5 5 C 1.52996 * 109.47205 * 120.00368 * 2 1 3 6 6 N 1.46496 * 109.47352 * 46.18079 * 5 2 1 7 7 C 1.46498 * 119.99959 * 81.91360 * 6 5 2 8 8 C 1.50704 * 109.47420 * 261.77152 * 7 6 5 9 9 H 1.07994 * 119.99556 * 3.60690 * 8 7 6 10 10 C 1.37877 * 119.99694 * 183.60170 * 8 7 6 11 11 N 1.31512 * 120.00612 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99507 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47070 * 60.00222 * 12 10 8 14 14 H 1.48495 * 109.46863 * 300.00095 * 12 10 8 15 15 H 1.48497 * 109.46782 * 180.02562 * 12 10 8 16 16 C 1.34777 * 120.00276 * 261.91841 * 6 5 2 17 17 O 1.21284 * 120.00355 * 184.05642 * 16 6 5 18 18 C 1.50705 * 119.99937 * 4.05514 * 16 6 5 19 19 H 1.08998 * 109.64010 * 39.30949 * 18 16 6 20 20 C 1.53021 * 109.64305 * 278.88706 * 18 16 6 21 21 C 1.50064 * 110.14946 * 190.87525 * 20 18 16 22 22 C 1.29446 * 124.07170 * 17.13915 * 21 20 18 23 23 C 1.50062 * 124.07626 * 359.49482 * 22 21 20 24 24 C 1.52971 * 110.28872 * 17.03474 * 23 22 21 25 25 H 1.08998 * 109.46891 * 307.66364 * 1 2 3 26 26 H 1.09006 * 109.46978 * 67.66040 * 1 2 3 27 27 H 1.08999 * 109.46844 * 187.65737 * 1 2 3 28 28 H 1.08996 * 109.47374 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47279 * 300.00273 * 3 2 1 30 30 H 1.08998 * 109.46958 * 59.99845 * 3 2 1 31 31 H 1.09004 * 109.47162 * 317.12612 * 4 2 1 32 32 H 1.09003 * 109.46885 * 77.12360 * 4 2 1 33 33 H 1.08992 * 109.47464 * 197.12396 * 4 2 1 34 34 H 1.09004 * 109.47119 * 286.18320 * 5 2 1 35 35 H 1.08994 * 109.47144 * 166.18635 * 5 2 1 36 36 H 1.09001 * 109.47079 * 141.77488 * 7 6 5 37 37 H 1.08995 * 109.46799 * 21.77520 * 7 6 5 38 38 H 0.97005 * 119.99640 * 359.97438 * 11 10 8 39 39 H 1.09000 * 109.35485 * 311.08886 * 20 18 16 40 40 H 1.09009 * 109.35804 * 70.66911 * 20 18 16 41 41 H 1.07997 * 117.96635 * 197.10711 * 21 20 18 42 42 H 1.07998 * 117.95958 * 179.53068 * 22 21 20 43 43 H 1.09006 * 109.35778 * 137.36856 * 23 22 21 44 44 H 1.08995 * 109.36415 * 257.08828 * 23 22 21 45 45 H 1.09003 * 109.79154 * 191.07793 * 24 23 22 46 46 H 1.08998 * 109.47652 * 70.45271 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.3013 -1.9740 1.4256 7 6 1.6914 -3.1671 0.6704 8 6 0.8005 -3.3114 -0.5365 9 1 0.0601 -2.5560 -0.7544 10 6 0.9307 -4.4077 -1.3624 11 7 1.8321 -5.3278 -1.0967 12 14 -0.1732 -4.5862 -2.8587 13 1 0.0308 -3.4278 -3.7653 14 1 -1.5924 -4.6308 -2.4242 15 1 0.1643 -5.8420 -3.5758 16 6 0.2626 -2.0288 2.2827 17 8 -0.3025 -3.0828 2.4842 18 6 -0.1968 -0.7802 2.9908 19 1 -0.1513 0.0668 2.3064 20 6 0.7030 -0.5138 4.1995 21 6 0.1073 0.5613 5.0604 22 6 -1.1285 0.9411 4.9951 23 6 -2.1353 0.3669 4.0419 24 6 -1.6370 -0.9676 3.4844 25 1 -0.3633 0.6279 0.8135 26 1 -0.3633 0.3906 -0.9506 27 1 -0.3633 -1.0185 0.1369 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.4511 -1.6236 -1.4138 32 1 1.9452 -0.0630 -2.1129 33 1 3.0870 -0.9909 -1.1112 34 1 1.8911 -0.0856 2.1220 35 1 3.1020 -0.9387 1.1350 36 1 1.5896 -4.0478 1.3044 37 1 2.7278 -3.0697 0.3474 38 1 2.4056 -5.2349 -0.3199 39 1 0.8048 -1.4290 4.7828 40 1 1.6871 -0.1964 3.8544 41 1 0.7493 1.0481 5.7795 42 1 -1.4551 1.7200 5.6681 43 1 -3.0793 0.2110 4.5641 44 1 -2.2894 1.0623 3.2169 45 1 -2.2708 -1.2807 2.6547 46 1 -1.6594 -1.7213 4.2714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264235565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:54 Heat of formation + Delta-G solvation = -54.877251 kcal Electronic energy + Delta-G solvation = -24059.586770 eV Core-core repulsion = 20948.110388 eV Total energy + Delta-G solvation = -3111.476382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63796 -38.95287 -38.21895 -35.73600 -34.50396 -32.34041 -31.75233 -29.37163 -28.29419 -27.75839 -26.78521 -25.45702 -24.29432 -23.31438 -20.66007 -19.61602 -19.02033 -18.78151 -17.89024 -17.24655 -16.75119 -15.98620 -15.67514 -15.32586 -15.16899 -14.91026 -14.76962 -14.53033 -14.33421 -14.02153 -13.83359 -13.74898 -13.40511 -13.28533 -13.10561 -12.92558 -12.72689 -12.50350 -12.37985 -12.32025 -12.00011 -11.97707 -11.85468 -11.67513 -11.47739 -11.37500 -11.20457 -10.86662 -10.52776 -10.43775 -9.85055 -9.34512 -8.58506 -6.27921 1.43893 1.47909 1.56466 1.73962 1.80245 2.31126 2.55649 3.16661 3.53189 3.73459 3.81021 3.87531 3.94185 4.16009 4.22100 4.29631 4.36696 4.39017 4.51195 4.59628 4.61487 4.69203 4.76187 4.78914 4.87037 4.88623 4.91837 4.98425 5.02459 5.04789 5.09533 5.17680 5.22835 5.24426 5.29292 5.36546 5.45542 5.49225 5.74363 5.79725 5.89518 5.99286 6.07658 6.27158 6.54731 6.74620 7.37295 7.50131 8.75198 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.006329 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.220989 B = 4422.739000 C = 4983.699959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.168 4.168 5 C 0.111 3.889 6 N -0.591 5.591 7 C 0.252 3.748 8 C -0.580 4.580 9 H 0.062 0.938 10 C -0.034 4.034 11 N -0.938 5.938 12 Si 1.105 2.895 13 H -0.260 1.260 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.507 3.493 17 O -0.599 6.599 18 C -0.106 4.106 19 H 0.119 0.881 20 C -0.081 4.081 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.087 4.087 24 C -0.100 4.100 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.070 0.930 36 H -0.020 1.020 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 19.700 8.283 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.188 4.188 4 C -0.225 4.225 5 C -0.011 4.011 6 N -0.321 5.321 7 C 0.130 3.870 8 C -0.618 4.618 9 H 0.080 0.920 10 C -0.232 4.232 11 N -0.576 5.576 12 Si 0.928 3.072 13 H -0.185 1.185 14 H -0.209 1.209 15 H -0.210 1.210 16 C 0.297 3.703 17 O -0.481 6.481 18 C -0.127 4.127 19 H 0.136 0.864 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.169 4.169 23 C -0.124 4.124 24 C -0.139 4.139 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.122 0.878 35 H 0.088 0.912 36 H -0.002 1.002 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.779 18.180 7.098 19.713 hybrid contribution 0.669 -0.084 1.130 1.316 sum -2.110 18.096 8.227 19.990 Atomic orbital electron populations 1.22080 0.95339 1.01105 1.01626 1.20835 0.95641 0.96287 0.94882 1.21805 1.01283 0.92965 1.02741 1.22396 1.00822 1.02487 0.96802 1.22056 0.95636 0.84377 0.99047 1.47992 1.31474 1.12033 1.40557 1.18829 0.94704 0.83150 0.90294 1.22391 1.20515 1.08910 1.10013 0.91994 1.27066 0.99068 0.92233 1.04853 1.70911 1.21562 1.36182 1.28934 0.83086 0.74059 0.77053 0.73046 1.18492 1.20920 1.20997 1.21256 0.79231 0.90843 0.78985 1.90625 1.57118 1.34268 1.66047 1.21664 0.97492 0.95300 0.98215 0.86370 1.20446 0.98734 0.98525 0.94111 1.22029 0.97108 0.98181 1.00321 1.22262 0.94511 1.00648 0.99511 1.20489 0.98489 0.94667 0.98742 1.21384 0.93795 0.98593 1.00083 0.91090 0.92649 0.94541 0.92045 0.92016 0.90939 0.90174 0.93183 0.94702 0.87752 0.91176 1.00169 0.96681 0.93765 0.92433 0.89172 0.85370 0.85285 0.89459 0.89494 0.93200 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 6.97 71.98 0.50 -3.94 16 2 C -0.08 -2.20 0.87 -52.18 -0.05 -2.25 16 3 C -0.13 -2.66 8.35 71.98 0.60 -2.06 16 4 C -0.17 -6.01 7.94 71.98 0.57 -5.44 16 5 C 0.11 3.45 4.47 86.38 0.39 3.84 16 6 N -0.59 -24.79 1.73 -826.17 -1.43 -26.22 16 7 C 0.25 13.32 3.85 85.63 0.33 13.65 16 8 C -0.58 -32.36 6.33 25.60 0.16 -32.19 16 9 H 0.06 3.42 4.93 -2.91 -0.01 3.41 16 10 C -0.03 -2.00 5.46 84.65 0.46 -1.54 16 11 N -0.94 -58.68 13.65 21.45 0.29 -58.39 16 12 Si 1.11 51.79 29.90 68.60 2.05 53.84 16 13 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 16 C 0.51 21.54 5.30 87.66 0.46 22.00 16 17 O -0.60 -32.28 15.88 -3.04 -0.05 -32.33 16 18 C -0.11 -3.16 1.51 -11.40 -0.02 -3.17 16 19 H 0.12 3.08 4.01 -2.39 -0.01 3.07 16 20 C -0.08 -1.98 5.21 29.66 0.15 -1.82 16 21 C -0.16 -2.92 9.81 27.03 0.27 -2.66 16 22 C -0.15 -2.59 9.81 27.03 0.27 -2.33 16 23 C -0.09 -1.70 6.11 29.64 0.18 -1.52 16 24 C -0.10 -2.92 4.67 30.72 0.14 -2.78 16 25 H 0.07 1.77 5.90 -2.39 -0.01 1.75 16 26 H 0.05 1.60 8.13 -2.38 -0.02 1.58 16 27 H 0.04 1.44 4.06 -2.39 -0.01 1.43 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 3.58 3.65 -2.38 -0.01 3.58 16 32 H 0.05 1.58 8.02 -2.39 -0.02 1.56 16 33 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16 34 H 0.10 2.53 4.37 -2.38 -0.01 2.52 16 35 H 0.07 2.16 7.70 -2.39 -0.02 2.14 16 36 H -0.02 -1.22 7.35 -2.39 -0.02 -1.23 16 37 H 0.02 0.81 7.87 -2.39 -0.02 0.79 16 38 H 0.25 16.09 7.21 -92.70 -0.67 15.42 16 39 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.09 1.90 6.25 -2.38 -0.01 1.89 16 41 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.05 1.64 8.11 -2.39 -0.02 1.63 16 Total: -1.00 -73.13 337.60 6.35 -66.78 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.06 Total: 18.52 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 4.43 Total: -22.21 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -1.14 Total: -84.61 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -73.13 6.35 -66.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264235565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.906 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds