Wall clock time and date at job start Tue Mar 31 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 C 1.52998 * 109.47108 * 239.99843 * 2 1 3 5 5 C 1.53003 * 109.47066 * 120.00144 * 2 1 3 6 6 N 1.46492 * 109.47398 * 65.97276 * 5 2 1 7 7 C 1.46504 * 120.00189 * 274.18156 * 6 5 2 8 8 C 1.50698 * 109.47020 * 264.09451 * 7 6 5 9 9 H 1.08001 * 120.00385 * 355.36547 * 8 7 6 10 10 C 1.37876 * 119.99703 * 175.37162 * 8 7 6 11 11 N 1.31512 * 120.00429 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99626 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47278 * 269.99477 * 12 10 8 14 14 H 1.48497 * 109.47433 * 29.99826 * 12 10 8 15 15 H 1.48506 * 109.47116 * 150.00040 * 12 10 8 16 16 C 1.34780 * 119.99913 * 94.18014 * 6 5 2 17 17 O 1.21288 * 119.99518 * 185.20047 * 16 6 5 18 18 C 1.50689 * 120.00081 * 5.20273 * 16 6 5 19 19 C 1.53006 * 109.47106 * 181.87902 * 18 16 6 20 20 H 1.08997 * 110.34465 * 55.83932 * 19 18 16 21 21 C 1.51101 * 110.38664 * 293.54507 * 19 18 16 22 22 C 1.30531 * 111.10062 * 224.74976 * 21 19 18 23 23 C 1.51097 * 111.10654 * 0.02562 * 22 21 19 24 24 C 1.54633 * 104.72667 * 16.43061 * 23 22 21 25 25 H 1.09002 * 109.47052 * 291.03087 * 1 2 3 26 26 H 1.08995 * 109.46652 * 51.03467 * 1 2 3 27 27 H 1.09006 * 109.46855 * 171.03081 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47075 * 300.00267 * 3 2 1 30 30 H 1.08999 * 109.46900 * 59.99729 * 3 2 1 31 31 H 1.09005 * 109.47299 * 300.74324 * 4 2 1 32 32 H 1.09000 * 109.47388 * 60.74710 * 4 2 1 33 33 H 1.09000 * 109.47419 * 180.74786 * 4 2 1 34 34 H 1.09003 * 109.46835 * 305.96926 * 5 2 1 35 35 H 1.08998 * 109.46764 * 185.97620 * 5 2 1 36 36 H 1.08999 * 109.47478 * 144.08959 * 7 6 5 37 37 H 1.09003 * 109.47052 * 24.09163 * 7 6 5 38 38 H 0.96998 * 119.99884 * 0.02562 * 11 10 8 39 39 H 1.08998 * 109.47289 * 301.87719 * 18 16 6 40 40 H 1.08996 * 109.47578 * 61.88107 * 18 16 6 41 41 H 1.07995 * 124.44834 * 44.73042 * 21 19 18 42 42 H 1.08002 * 124.44313 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.39039 * 135.24601 * 23 22 21 44 44 H 1.09009 * 110.38445 * 257.50903 * 23 22 21 45 45 H 1.08997 * 111.03601 * 217.33411 * 24 23 22 46 46 H 1.09004 * 111.03362 * 93.40112 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6726 -2.1377 1.1796 7 6 0.3584 -2.5778 1.6543 8 6 0.4757 -3.0688 3.0742 9 1 1.4447 -3.1249 3.5479 10 6 -0.6539 -3.4465 3.7686 11 7 -1.8339 -3.3779 3.1920 12 14 -0.5084 -4.0558 5.5284 13 1 -0.3182 -5.5287 5.5282 14 1 0.6560 -3.4064 6.1824 15 1 -1.7473 -3.7169 6.2737 16 6 2.5437 -3.0360 0.6787 17 8 2.2063 -4.1919 0.5333 18 6 3.9367 -2.6042 0.2995 19 6 4.6997 -3.7963 -0.2818 20 1 4.1536 -4.2216 -1.1239 21 6 4.9271 -4.8451 0.7819 22 6 6.1523 -5.2936 0.7452 23 6 6.9464 -4.6184 -0.3486 24 6 6.1192 -3.3655 -0.7187 25 1 -0.3633 0.3688 0.9592 26 1 -0.3632 0.6462 -0.7990 27 1 -0.3633 -1.0152 -0.1602 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6658 -1.7451 -1.2559 32 1 1.6877 -0.1998 -2.1392 33 1 3.1299 -0.7329 -1.2426 34 1 1.5920 -0.2729 2.1360 35 1 3.1248 -0.6295 1.3043 36 1 -0.0055 -3.3856 1.0194 37 1 -0.3405 -1.7422 1.6154 38 1 -1.9095 -3.0619 2.2780 39 1 3.8810 -1.8104 -0.4454 40 1 4.4567 -2.2365 1.1840 41 1 4.1748 -5.1794 1.4809 42 1 6.5467 -6.0484 1.4095 43 1 7.9304 -4.3285 0.0200 44 1 7.0441 -5.2791 -1.2101 45 1 6.1572 -3.1742 -1.7911 46 1 6.4549 -2.4946 -0.1555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264328103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:00 Heat of formation + Delta-G solvation = -38.325418 kcal Electronic energy + Delta-G solvation = -23324.463420 eV Core-core repulsion = 20213.704780 eV Total energy + Delta-G solvation = -3110.758640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88719 -38.31398 -36.87114 -34.05374 -32.53380 -31.31624 -28.80206 -27.75661 -27.23886 -26.80551 -25.67622 -24.60686 -22.54176 -20.40270 -19.40133 -18.66689 -17.85736 -16.89800 -16.34574 -15.85555 -15.54693 -14.98305 -14.74170 -14.03455 -13.86823 -13.69616 -13.59157 -13.03626 -12.59244 -12.40424 -12.12812 -12.04437 -11.79676 -11.70330 -11.62879 -11.45649 -11.37626 -11.31794 -11.16325 -10.98245 -10.81991 -10.73665 -10.62241 -10.57629 -10.37622 -10.17583 -10.10977 -9.04526 -8.83234 -8.69255 -8.34519 -7.52417 -6.35146 -4.06210 2.52747 3.43166 3.46680 3.48356 3.63085 3.92907 4.55142 4.71869 4.74066 4.93411 4.95843 4.98900 5.08502 5.30494 5.35352 5.39972 5.50874 5.59059 5.63256 5.65502 5.67964 5.70962 5.77437 5.82503 5.89120 5.92839 5.98974 6.04298 6.06058 6.12905 6.18216 6.27777 6.34534 6.35918 6.41763 6.52342 6.62196 6.82622 6.90582 7.13597 7.20670 7.49527 8.09484 8.39766 8.48446 8.82106 9.12152 9.62733 11.01930 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.006729 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.883795 B = 4160.104665 C = 5954.968023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.121 3.879 6 N -0.592 5.592 7 C 0.234 3.766 8 C -0.602 4.602 9 H 0.049 0.951 10 C 0.019 3.981 11 N -0.912 5.912 12 Si 1.072 2.928 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.510 3.490 17 O -0.541 6.541 18 C -0.145 4.145 19 C -0.053 4.053 20 H 0.087 0.913 21 C -0.126 4.126 22 C -0.198 4.198 23 C -0.095 4.095 24 C -0.122 4.122 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.861 7.343 -8.279 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.004 4.004 6 N -0.323 5.323 7 C 0.114 3.886 8 C -0.641 4.641 9 H 0.068 0.932 10 C -0.185 4.185 11 N -0.548 5.548 12 Si 0.900 3.100 13 H -0.214 1.214 14 H -0.216 1.216 15 H -0.210 1.210 16 C 0.297 3.703 17 O -0.419 6.419 18 C -0.185 4.185 19 C -0.072 4.072 20 H 0.105 0.895 21 C -0.144 4.144 22 C -0.216 4.216 23 C -0.132 4.132 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.774 6.171 -7.054 15.844 hybrid contribution 0.835 0.573 -1.135 1.521 sum 13.609 6.744 -8.189 17.256 Atomic orbital electron populations 1.21952 0.94113 1.02338 1.01330 1.21003 0.96701 0.95125 0.96032 1.21806 1.00589 0.95298 1.01771 1.22080 1.00266 1.01032 0.96838 1.21536 0.99363 0.82335 0.97117 1.47967 1.17763 1.05921 1.60607 1.19401 0.78992 0.95170 0.94994 1.22299 0.95781 1.47668 0.98329 0.93242 1.25753 0.92198 0.95000 1.05527 1.70776 1.24598 1.44108 1.15362 0.83503 0.75316 0.76548 0.74609 1.21430 1.21605 1.20967 1.20298 0.86464 0.85798 0.77760 1.90653 1.78493 1.18428 1.54282 1.22070 0.94492 0.99511 1.02442 1.20812 0.94994 0.93834 0.97526 0.89538 1.23456 0.96651 0.96598 0.97693 1.23178 0.96295 1.02149 1.00008 1.21285 0.98439 0.96130 0.97343 1.22559 0.94700 0.97810 1.00900 0.92414 0.93456 0.91819 0.92817 0.92714 0.92501 0.92172 0.92977 0.92476 0.90416 0.91423 0.95686 0.95029 0.92283 0.88625 0.89653 0.85274 0.86322 0.91760 0.91272 0.91156 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.11 37.16 0.26 -1.87 16 2 C -0.09 -1.19 0.85 -154.51 -0.13 -1.32 16 3 C -0.14 -1.47 8.46 37.16 0.31 -1.15 16 4 C -0.15 -1.90 7.04 37.16 0.26 -1.64 16 5 C 0.12 1.96 4.49 -4.04 -0.02 1.94 16 6 N -0.59 -12.24 1.96 -175.06 -0.34 -12.58 16 7 C 0.23 5.99 3.51 -5.19 -0.02 5.97 16 8 C -0.60 -17.27 9.33 -34.44 -0.32 -17.59 16 9 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 10 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 11 N -0.91 -27.80 13.65 55.43 0.76 -27.05 16 12 Si 1.07 25.97 29.90 -169.99 -5.08 20.89 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.51 10.42 5.81 -10.99 -0.06 10.36 16 17 O -0.54 -13.38 14.26 5.55 0.08 -13.30 16 18 C -0.15 -2.19 3.42 -27.88 -0.10 -2.28 16 19 C -0.05 -0.77 2.55 -90.71 -0.23 -1.01 16 20 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 21 C -0.13 -2.03 9.18 -35.70 -0.33 -2.36 16 22 C -0.20 -2.68 10.77 -35.70 -0.38 -3.06 16 23 C -0.09 -1.05 6.81 -26.83 -0.18 -1.23 16 24 C -0.12 -1.35 6.71 -25.01 -0.17 -1.52 16 25 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 26 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.06 1.14 6.43 -51.93 -0.33 0.80 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.96 6.54 -51.93 -0.34 0.62 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.65 5.62 -51.93 -0.29 0.36 16 34 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 35 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 36 H 0.03 0.73 7.53 -51.93 -0.39 0.33 16 37 H 0.03 0.80 5.47 -51.93 -0.28 0.52 16 38 H 0.27 8.06 7.19 -40.82 -0.29 7.77 16 39 H 0.10 1.21 4.34 -51.93 -0.23 0.99 16 40 H 0.09 1.22 7.70 -51.93 -0.40 0.82 16 41 H 0.13 2.47 7.25 -52.49 -0.38 2.09 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -32.56 349.94 -8.45 -41.02 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.94 Total: 2.07 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.20 Total: -16.31 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.41 Total: -39.63 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.56 -8.45 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264328103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.692 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds