Wall clock time and date at job start Tue Mar 31 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 C 1.52999 * 109.46731 * 119.99575 * 2 1 3 5 5 C 1.52994 * 109.47339 * 239.99429 * 2 1 3 6 6 N 1.46506 * 109.46960 * 62.93418 * 5 2 1 7 7 C 1.46494 * 119.99803 * 86.06545 * 6 5 2 8 8 C 1.50702 * 109.47519 * 90.00039 * 7 6 5 9 9 H 1.08001 * 119.99558 * 0.02562 * 8 7 6 10 10 C 1.37867 * 120.00577 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99963 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00328 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47256 * 90.00056 * 12 10 8 14 14 H 1.48504 * 109.47028 * 210.00224 * 12 10 8 15 15 H 1.48505 * 109.46872 * 330.00016 * 12 10 8 16 16 C 1.34774 * 120.00253 * 266.06526 * 6 5 2 17 17 O 1.21276 * 120.00483 * 174.47505 * 16 6 5 18 18 C 1.50707 * 120.00156 * 354.47834 * 16 6 5 19 19 C 1.52990 * 109.47449 * 184.48679 * 18 16 6 20 20 H 1.09006 * 110.34473 * 304.16351 * 19 18 16 21 21 C 1.51106 * 110.38888 * 66.45345 * 19 18 16 22 22 C 1.30524 * 111.10425 * 135.24537 * 21 19 18 23 23 C 1.51109 * 111.10512 * 0.02562 * 22 21 19 24 24 C 1.54635 * 110.38589 * 181.75890 * 19 18 16 25 25 H 1.09002 * 109.46597 * 60.68257 * 1 2 3 26 26 H 1.08995 * 109.46957 * 180.68186 * 1 2 3 27 27 H 1.08998 * 109.47180 * 300.68819 * 1 2 3 28 28 H 1.08998 * 109.47222 * 59.99557 * 3 2 1 29 29 H 1.08996 * 109.47300 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47052 * 299.99554 * 3 2 1 31 31 H 1.09010 * 109.46998 * 60.00112 * 4 2 1 32 32 H 1.08996 * 109.47156 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47253 * 300.00128 * 4 2 1 34 34 H 1.08992 * 109.47735 * 182.93396 * 5 2 1 35 35 H 1.09004 * 109.47373 * 302.93823 * 5 2 1 36 36 H 1.09004 * 109.47040 * 210.00220 * 7 6 5 37 37 H 1.09004 * 109.47738 * 329.99938 * 7 6 5 38 38 H 0.97001 * 120.00066 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.46997 * 304.48941 * 18 16 6 40 40 H 1.09006 * 109.46829 * 64.48056 * 18 16 6 41 41 H 1.07998 * 124.44344 * 315.23261 * 21 19 18 42 42 H 1.07998 * 124.44592 * 179.97438 * 22 21 19 43 43 H 1.09003 * 110.38605 * 102.37223 * 23 22 21 44 44 H 1.09000 * 110.38239 * 224.63779 * 23 22 21 45 45 H 1.08995 * 111.03645 * 334.58052 * 24 19 18 46 46 H 1.09002 * 111.03801 * 98.52420 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2491 6 7 1.6103 0.0088 -2.4443 7 6 2.4183 1.1193 -2.9542 8 6 3.4254 0.5945 -3.9449 9 1 3.4599 -0.4607 -4.1722 10 6 4.3021 1.4615 -4.5617 11 7 4.2599 2.7466 -4.2852 12 14 5.5500 0.8111 -5.7902 13 1 4.9602 0.8316 -7.1528 14 1 6.7636 1.6665 -5.7631 15 1 5.9183 -0.5821 -5.4310 16 6 0.4717 -0.3411 -3.0748 17 8 0.0632 0.3242 -4.0028 18 6 -0.2941 -1.5593 -2.6264 19 6 -1.4749 -1.7953 -3.5702 20 1 -2.1031 -0.9059 -3.6210 21 6 -0.9807 -2.1702 -4.9481 22 6 -1.6554 -3.1777 -5.4313 23 6 -2.7125 -3.6422 -4.4566 24 6 -2.3018 -3.0159 -3.1035 25 1 -0.3632 0.5032 -0.8961 26 1 -0.3633 -1.0276 0.0122 27 1 -0.3633 0.5245 0.8837 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6766 -1.7489 1.2493 32 1 3.1299 -0.7216 1.2492 33 1 1.6766 -0.2073 2.1392 34 1 3.1287 -0.7671 -1.2233 35 1 1.6344 -1.7327 -1.2758 36 1 1.7698 1.8450 -3.4452 37 1 2.9395 1.5997 -2.1262 38 1 4.8764 3.3567 -4.7195 39 1 0.3636 -2.4283 -2.6429 40 1 -0.6643 -1.4031 -1.6131 41 1 -0.1752 -1.6701 -5.4651 42 1 -1.4816 -3.6205 -6.4009 43 1 -3.6947 -3.2803 -4.7606 44 1 -2.7139 -4.7301 -4.3880 45 1 -1.6885 -3.7051 -2.5231 46 1 -3.1778 -2.7013 -2.5363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264328104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:05 Heat of formation + Delta-G solvation = -52.700663 kcal Electronic energy + Delta-G solvation = -23277.193545 eV Core-core repulsion = 20165.811547 eV Total energy + Delta-G solvation = -3111.381998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26257 -39.40204 -38.20830 -35.65325 -34.30042 -32.63665 -29.91185 -29.60484 -28.23626 -28.07967 -26.97786 -26.28515 -24.23209 -21.34150 -20.67287 -19.78917 -19.00593 -18.68134 -17.78868 -17.17788 -16.79390 -16.59440 -16.12085 -15.75511 -15.11580 -14.89871 -14.77929 -14.44932 -14.16679 -13.61773 -13.53627 -13.24369 -12.96710 -12.95046 -12.82755 -12.71004 -12.63623 -12.53753 -12.46873 -12.40310 -12.15473 -12.04312 -11.93187 -11.91602 -11.69798 -11.61951 -11.43039 -11.32862 -10.62742 -10.43255 -9.76324 -9.29199 -8.21877 -6.36665 1.32632 1.35623 1.40228 1.45230 1.94043 2.32555 2.51830 3.06573 3.63684 3.77123 3.89450 3.92439 3.97840 4.04355 4.17400 4.37052 4.46852 4.58945 4.61909 4.63098 4.70659 4.74620 4.81240 4.84172 4.96327 4.97404 5.00128 5.03173 5.08965 5.12416 5.14258 5.18182 5.23423 5.28438 5.35465 5.39633 5.47353 5.48816 5.56425 5.62085 5.72687 5.93109 6.00065 6.11047 6.72279 6.90172 7.29449 7.59565 8.84204 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.006704 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.126072 B = 4175.589033 C = 5934.044190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.130 4.130 5 C 0.114 3.886 6 N -0.598 5.598 7 C 0.260 3.740 8 C -0.542 4.542 9 H 0.050 0.950 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.963 3.037 13 H -0.282 1.282 14 H -0.273 1.273 15 H -0.262 1.262 16 C 0.498 3.502 17 O -0.600 6.600 18 C -0.129 4.129 19 C -0.054 4.054 20 H 0.064 0.936 21 C -0.173 4.173 22 C -0.172 4.172 23 C -0.094 4.094 24 C -0.110 4.110 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.101 0.899 36 H -0.013 1.013 37 H 0.037 0.963 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 -14.404 11.041 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.187 4.187 5 C -0.009 4.009 6 N -0.328 5.328 7 C 0.138 3.862 8 C -0.581 4.581 9 H 0.068 0.932 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.787 3.213 13 H -0.209 1.209 14 H -0.198 1.198 15 H -0.186 1.186 16 C 0.288 3.712 17 O -0.482 6.482 18 C -0.168 4.168 19 C -0.073 4.073 20 H 0.082 0.918 21 C -0.192 4.192 22 C -0.190 4.190 23 C -0.131 4.131 24 C -0.147 4.147 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.005 0.995 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.675 -13.887 10.548 20.447 hybrid contribution 1.214 0.898 -1.426 2.077 sum -9.461 -12.990 9.122 18.479 Atomic orbital electron populations 1.22031 0.93968 1.02663 1.01113 1.20976 0.96507 0.95238 0.95574 1.21957 1.00239 0.96807 1.00747 1.21749 1.00991 1.00786 0.95197 1.21842 1.00160 0.95711 0.83162 1.48126 1.22702 1.34063 1.27895 1.18834 0.88630 0.85038 0.93674 1.21776 1.17137 0.94079 1.25098 0.93218 1.25820 0.99644 0.94972 0.98651 1.70058 1.38883 1.03470 1.44380 0.85489 0.78265 0.78817 0.78697 1.20858 1.19839 1.18592 1.21370 0.80954 0.86958 0.81895 1.90616 1.69431 1.56334 1.31806 1.22065 0.97269 0.95029 1.02451 1.20832 0.95280 0.99284 0.91885 0.91801 1.23256 0.99823 0.97900 0.98186 1.23536 0.97647 0.97492 1.00349 1.21382 0.97281 1.01580 0.92866 1.22570 0.99816 0.95072 0.97279 0.95474 0.89701 0.91290 0.91602 0.93821 0.95270 0.90436 0.92859 0.91345 0.91709 0.88098 0.99495 0.94527 0.92525 0.87993 0.85556 0.90064 0.85467 0.90099 0.89140 0.89142 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 6.83 71.98 0.49 -2.75 16 2 C -0.08 -2.13 0.85 -52.18 -0.04 -2.17 16 3 C -0.14 -4.53 7.07 71.98 0.51 -4.03 16 4 C -0.13 -2.39 8.47 71.98 0.61 -1.78 16 5 C 0.11 3.60 4.57 86.38 0.40 4.00 16 6 N -0.60 -25.79 1.98 -826.16 -1.64 -27.43 16 7 C 0.26 14.35 4.01 85.63 0.34 14.69 16 8 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 9 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 10 C 0.01 0.47 5.46 84.65 0.46 0.93 16 11 N -0.93 -57.57 13.29 21.44 0.28 -57.29 16 12 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 C 0.50 21.25 5.90 87.66 0.52 21.77 16 17 O -0.60 -32.15 14.42 -3.02 -0.04 -32.20 16 18 C -0.13 -3.71 3.45 29.85 0.10 -3.60 16 19 C -0.05 -1.54 2.54 -10.86 -0.03 -1.57 16 20 H 0.06 2.09 7.95 -2.38 -0.02 2.08 16 21 C -0.17 -5.72 9.22 26.27 0.24 -5.48 16 22 C -0.17 -4.41 10.77 26.27 0.28 -4.12 16 23 C -0.09 -1.73 6.81 30.54 0.21 -1.52 16 24 C -0.11 -2.00 6.71 31.71 0.21 -1.79 16 25 H 0.03 0.80 6.22 -2.39 -0.01 0.78 16 26 H 0.08 1.44 6.51 -2.39 -0.02 1.42 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.49 7.90 -2.39 -0.02 1.47 16 30 H 0.03 1.17 5.79 -2.38 -0.01 1.15 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 35 H 0.10 2.47 6.20 -2.39 -0.01 2.46 16 36 H -0.01 -0.85 7.35 -2.38 -0.02 -0.87 16 37 H 0.04 2.04 5.56 -2.39 -0.01 2.03 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.10 2.60 7.39 -2.39 -0.02 2.58 16 40 H 0.13 2.81 4.44 -2.38 -0.01 2.80 16 41 H 0.08 3.40 7.46 -2.91 -0.02 3.38 16 42 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.33 7.91 -2.39 -0.02 1.31 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -76.56 350.69 6.11 -70.45 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.93 Total: 17.64 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.55 Total: -19.36 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.35 Total: -84.72 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.04 Total: -32.20 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.56 6.11 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264328104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.746 kcal (2) G-P(sol) polarization free energy of solvation -76.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds