Wall clock time and date at job start Tue Mar 31 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46993 * 65.00342 * 3 2 1 5 5 C 1.52995 * 109.47206 * 186.12506 * 4 3 2 6 6 C 1.53008 * 109.47246 * 185.00047 * 3 2 1 7 7 N 1.46498 * 109.46752 * 62.87505 * 6 3 2 8 8 C 1.46494 * 120.00064 * 83.72069 * 7 6 3 9 9 C 1.50711 * 109.47073 * 87.81015 * 8 7 6 10 10 H 1.07997 * 119.99529 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00000 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99713 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00157 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46793 * 90.00395 * 13 11 9 15 15 H 1.48495 * 109.47079 * 210.00315 * 13 11 9 16 16 H 1.48501 * 109.46805 * 330.00420 * 13 11 9 17 17 C 1.34781 * 119.99851 * 263.99545 * 7 6 3 18 18 O 1.21610 * 120.00169 * 359.73019 * 17 7 6 19 19 C 1.47105 * 119.99678 * 179.72684 * 17 7 6 20 20 C 1.32998 * 119.99754 * 180.02562 * 19 17 7 21 21 C 1.51405 * 136.31342 * 359.62760 * 20 19 17 22 22 C 1.53380 * 87.51627 * 206.06094 * 21 20 19 23 23 C 1.51406 * 136.31585 * 180.02562 * 20 19 17 24 24 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47038 * 299.99685 * 1 2 3 26 26 H 1.08998 * 109.47423 * 59.99888 * 1 2 3 27 27 H 1.08999 * 109.47038 * 240.00315 * 2 1 3 28 28 H 1.08998 * 109.47423 * 120.00112 * 2 1 3 29 29 H 1.09000 * 109.47497 * 305.00558 * 3 2 1 30 30 H 1.08997 * 109.47163 * 306.13076 * 4 3 2 31 31 H 1.09003 * 109.47096 * 66.12382 * 4 3 2 32 32 H 1.09005 * 109.47262 * 183.73058 * 5 4 3 33 33 H 1.09003 * 109.47539 * 303.72989 * 5 4 3 34 34 H 1.09002 * 109.47453 * 63.73142 * 5 4 3 35 35 H 1.09000 * 109.46874 * 302.87477 * 6 3 2 36 36 H 1.08997 * 109.46898 * 182.87522 * 6 3 2 37 37 H 1.09000 * 109.47729 * 207.80140 * 8 7 6 38 38 H 1.09000 * 109.47323 * 327.80872 * 8 7 6 39 39 H 0.96999 * 119.99368 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.00123 * 0.02562 * 19 17 7 41 41 H 1.08997 * 113.56376 * 320.63469 * 21 20 19 42 42 H 1.09000 * 113.56357 * 91.37824 * 21 20 19 43 43 H 1.08998 * 113.96832 * 220.29655 * 22 21 20 44 44 H 1.08996 * 113.60349 * 88.79105 * 22 21 20 45 45 H 1.08991 * 113.55808 * 268.62522 * 23 20 19 46 46 H 1.08999 * 113.55755 * 39.35996 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0100 3.6085 1.2449 6 6 3.5649 1.4444 -0.1257 7 7 3.9497 0.8512 -1.4088 8 6 3.9624 1.6732 -2.6213 9 6 5.3057 2.3420 -2.7608 10 1 6.0730 2.1721 -2.0200 11 6 5.5547 3.1716 -3.8335 12 7 6.7268 3.7557 -3.9548 13 14 4.2273 3.4661 -5.1144 14 1 3.4068 4.6381 -4.7166 15 1 4.8602 3.7291 -6.4317 16 1 3.3596 2.2650 -5.2131 17 6 4.2867 -0.4521 -1.4746 18 8 4.2761 -1.1345 -0.4680 19 6 4.6673 -1.0492 -2.7640 20 6 4.9994 -2.3354 -2.8291 21 6 5.1176 -3.4864 -1.8525 22 6 6.1417 -4.1070 -2.8110 23 6 5.4349 -3.3004 -3.9114 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5591 2.0295 1.4502 31 1 2.1562 1.6548 2.1406 32 1 1.7825 4.0814 2.2003 33 1 3.0755 3.7054 1.0362 34 1 1.4391 4.0947 0.4538 35 1 3.9972 0.8621 0.6880 36 1 3.9324 2.4692 -0.0744 37 1 3.7792 1.0415 -3.4906 38 1 3.1836 2.4327 -2.5536 39 1 6.9020 4.3391 -4.7097 40 1 4.6771 -0.4431 -3.6578 41 1 5.5419 -3.1996 -0.8903 42 1 4.2026 -4.0705 -1.7547 43 1 6.0442 -5.1866 -2.9247 44 1 7.1665 -3.7879 -2.6210 45 1 4.6070 -3.8334 -4.3787 46 1 6.1193 -2.8610 -4.6372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267981822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:25 Heat of formation + Delta-G solvation = -30.586547 kcal Electronic energy + Delta-G solvation = -22893.847461 eV Core-core repulsion = 19783.424403 eV Total energy + Delta-G solvation = -3110.423058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08149 -39.44493 -37.98912 -36.30273 -34.42023 -32.62962 -31.94131 -30.28906 -28.63809 -26.64179 -25.65773 -24.61727 -23.57246 -23.49942 -21.05163 -20.30482 -19.07714 -18.62916 -18.12290 -17.18344 -16.52836 -16.22534 -15.88635 -15.73939 -15.47642 -14.97799 -14.96378 -14.73910 -14.32328 -14.06939 -13.69785 -13.62773 -13.30295 -13.12701 -12.88315 -12.78723 -12.67972 -12.61405 -12.44774 -12.25428 -12.23091 -11.94092 -11.79154 -11.73043 -11.50150 -11.39682 -11.30153 -11.23365 -10.82921 -10.47394 -10.11002 -9.28993 -8.31600 -6.38854 0.48498 1.37852 1.38748 1.49175 2.29903 2.32644 2.47661 3.02162 3.42783 3.60825 3.80264 3.85206 3.93557 4.04528 4.17894 4.29194 4.38796 4.44846 4.51932 4.61110 4.67501 4.69878 4.73626 4.75292 4.77190 4.83081 4.88839 4.92952 4.98017 5.00353 5.05570 5.09854 5.11885 5.26929 5.27902 5.32159 5.40347 5.41337 5.44542 5.50708 5.56849 5.68387 5.85022 6.18252 6.62572 6.71577 7.24209 7.41395 8.85227 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.008227 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.582171 B = 3402.568565 C = 5674.964400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.095 4.095 4 C -0.109 4.109 5 C -0.155 4.155 6 C 0.120 3.880 7 N -0.591 5.591 8 C 0.221 3.779 9 C -0.540 4.540 10 H 0.024 0.976 11 C 0.018 3.982 12 N -0.943 5.943 13 Si 0.942 3.058 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.238 1.238 17 C 0.548 3.452 18 O -0.585 6.585 19 C -0.214 4.214 20 C -0.084 4.084 21 C -0.105 4.105 22 C -0.128 4.128 23 C -0.099 4.099 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.269 0.731 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.124 0.876 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 -10.210 2.888 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.114 4.114 4 C -0.146 4.146 5 C -0.213 4.213 6 C -0.002 4.002 7 N -0.320 5.320 8 C 0.099 3.901 9 C -0.578 4.578 10 H 0.043 0.957 11 C -0.180 4.180 12 N -0.583 5.583 13 Si 0.764 3.236 14 H -0.187 1.187 15 H -0.208 1.208 16 H -0.161 1.161 17 C 0.340 3.660 18 O -0.469 6.469 19 C -0.234 4.234 20 C -0.086 4.086 21 C -0.142 4.142 22 C -0.165 4.165 23 C -0.136 4.136 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.142 0.858 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.358 -10.404 3.305 15.753 hybrid contribution 0.456 0.948 -0.592 1.207 sum -10.902 -9.456 2.713 14.684 Atomic orbital electron populations 1.21780 0.94225 1.01778 1.02314 1.21384 0.96667 0.95555 1.00717 1.21535 0.93843 0.96737 0.99293 1.21513 1.02135 0.95313 0.95676 1.21845 1.01098 0.96105 1.02222 1.21527 0.95685 0.97968 0.85067 1.47783 1.65166 1.09024 1.09991 1.19590 0.95650 0.90991 0.83919 1.21523 0.98827 1.28206 1.09263 0.95744 1.25813 0.97829 0.94493 0.99914 1.70064 1.24555 1.31768 1.31918 0.85798 0.79321 0.80510 0.77977 1.18727 1.20764 1.16126 1.18610 0.76375 0.81759 0.89265 1.90626 1.56600 1.61898 1.37768 1.21807 1.08433 0.95725 0.97437 1.23935 0.89901 0.93208 1.01533 1.22261 1.00508 0.94044 0.97389 1.22675 0.97728 1.01073 0.95006 1.22427 1.00916 0.94524 0.95694 0.92608 0.91124 0.92819 0.94656 0.93089 0.91468 0.89739 0.92069 0.91271 0.93949 0.92622 0.91854 0.91400 0.93556 0.94151 0.92244 0.85283 0.92403 0.87392 0.87519 0.90436 0.85811 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.68 71.98 0.70 -2.62 16 2 C -0.11 -3.19 4.57 30.59 0.14 -3.06 16 3 C -0.09 -2.89 2.06 -10.79 -0.02 -2.91 16 4 C -0.11 -2.65 5.28 30.59 0.16 -2.49 16 5 C -0.16 -3.76 9.77 71.98 0.70 -3.06 16 6 C 0.12 4.62 4.83 86.38 0.42 5.03 16 7 N -0.59 -25.57 2.19 -830.42 -1.82 -27.39 16 8 C 0.22 10.05 4.03 85.64 0.35 10.40 16 9 C -0.54 -30.11 9.94 25.60 0.25 -29.85 16 10 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 11 C 0.02 1.01 5.47 84.65 0.46 1.47 16 12 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 13 Si 0.94 40.87 27.47 68.60 1.88 42.76 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 17 C 0.55 23.92 6.16 86.57 0.53 24.45 16 18 O -0.58 -26.55 13.69 -4.06 -0.06 -26.60 16 19 C -0.21 -8.48 9.22 23.43 0.22 -8.27 16 20 C -0.08 -2.75 6.93 -17.17 -0.12 -2.86 16 21 C -0.11 -2.97 6.99 30.06 0.21 -2.76 16 22 C -0.13 -2.73 8.17 30.94 0.25 -2.48 16 23 C -0.10 -2.28 7.95 30.15 0.24 -2.04 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.38 6.44 -2.39 -0.02 1.36 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.03 1.25 6.14 -2.39 -0.01 1.24 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 30 H 0.08 1.72 6.30 -2.39 -0.02 1.70 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.04 1.18 6.38 -2.39 -0.02 1.17 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 2.55 7.24 -2.39 -0.02 2.53 16 36 H 0.07 2.71 6.38 -2.39 -0.02 2.70 16 37 H 0.05 2.03 5.01 -2.39 -0.01 2.02 16 38 H 0.04 1.74 7.41 -2.39 -0.02 1.72 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.13 5.24 6.17 -2.91 -0.02 5.22 16 41 H 0.06 1.94 7.49 -2.39 -0.02 1.92 16 42 H 0.11 2.66 8.14 -2.39 -0.02 2.65 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -67.57 358.05 5.68 -61.89 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.88 Total: 27.39 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.49 Total: -21.03 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.52 Total: -84.41 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.06 Total: -26.60 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.76 kcal Total: -67.57 5.68 -61.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267981822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.306 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds