Wall clock time and date at job start Tue Mar 31 2020 01:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36815 * 120.00188 * 2 1 4 4 H 1.08002 * 120.00245 * 204.83490 * 3 2 1 5 5 C 1.39075 * 119.99772 * 24.82920 * 3 2 1 6 6 N 1.31343 * 120.00484 * 10.54980 * 5 3 2 7 7 Si 1.86807 * 119.99655 * 190.54714 * 5 3 2 8 8 H 1.48500 * 109.47081 * 94.93235 * 7 5 3 9 9 H 1.48501 * 109.47076 * 214.93005 * 7 5 3 10 10 H 1.48498 * 109.47329 * 334.93263 * 7 5 3 11 11 C 1.34773 * 120.00102 * 179.97438 * 2 1 3 12 12 O 1.21657 * 120.00415 * 180.02562 * 11 2 1 13 13 C 1.46956 * 119.99959 * 0.02562 * 11 2 1 14 14 C 1.33119 * 120.00461 * 172.78377 * 13 11 2 15 15 C 1.51263 * 120.85633 * 164.53704 * 14 13 11 16 16 C 1.53229 * 108.69792 * 128.53386 * 15 14 13 17 17 C 1.53374 * 109.18174 * 54.55217 * 16 15 14 18 18 C 1.52999 * 109.29465 * 176.41145 * 17 16 15 19 19 C 1.53000 * 109.47186 * 180.39425 * 18 17 16 20 20 C 1.53001 * 109.47380 * 300.39375 * 18 17 16 21 21 C 1.53001 * 109.46836 * 60.39910 * 18 17 16 22 22 C 1.52958 * 109.90981 * 296.50610 * 17 16 15 23 23 C 1.51270 * 120.84460 * 344.51688 * 14 13 11 24 24 H 1.09001 * 109.46814 * 264.87182 * 1 2 3 25 25 H 1.08998 * 109.46819 * 24.86884 * 1 2 3 26 26 H 1.08993 * 109.47363 * 144.87256 * 1 2 3 27 27 H 0.97003 * 120.00806 * 179.97438 * 6 5 3 28 28 H 1.08004 * 119.99598 * 352.78450 * 13 11 2 29 29 H 1.09001 * 109.62412 * 248.35095 * 15 14 13 30 30 H 1.09007 * 109.62539 * 8.72157 * 15 14 13 31 31 H 1.09001 * 109.47879 * 174.70453 * 16 15 14 32 32 H 1.08997 * 109.48273 * 294.74432 * 16 15 14 33 33 H 1.09005 * 109.37932 * 56.64712 * 17 16 15 34 34 H 1.09000 * 109.47047 * 60.00226 * 19 18 17 35 35 H 1.08992 * 109.47215 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47150 * 300.00662 * 19 18 17 37 37 H 1.09000 * 109.46969 * 60.00221 * 20 18 17 38 38 H 1.09002 * 109.47158 * 179.97438 * 20 18 17 39 39 H 1.08996 * 109.47540 * 300.00426 * 20 18 17 40 40 H 1.08997 * 109.47411 * 59.99962 * 21 18 17 41 41 H 1.09002 * 109.46686 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.47086 * 299.99517 * 21 18 17 43 43 H 1.09001 * 109.48174 * 303.62919 * 22 17 16 44 44 H 1.09003 * 109.48929 * 183.60588 * 22 17 16 45 45 H 1.09002 * 109.63174 * 351.07715 * 23 14 13 46 46 H 1.08996 * 109.62897 * 111.46271 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1848 0.0000 4 1 3.1543 1.2281 -0.3928 5 6 1.5502 2.3336 0.5058 6 7 0.4194 2.2474 1.1684 7 14 2.3540 3.9992 0.2427 8 1 1.7677 4.6478 -0.9576 9 1 2.1189 4.8558 1.4328 10 1 3.8145 3.8182 0.0439 11 6 2.1389 -1.1672 0.0005 12 8 3.3555 -1.1672 0.0010 13 6 1.4042 -2.4398 0.0005 14 6 2.0618 -3.5882 -0.1438 15 6 1.4030 -4.9073 0.1940 16 6 1.5650 -5.8566 -0.9979 17 6 3.0519 -5.9642 -1.3580 18 6 3.2260 -6.9797 -2.4891 19 6 4.7093 -7.0975 -2.8450 20 6 2.7005 -8.3432 -2.0357 21 6 2.4422 -6.5138 -3.7177 22 6 3.5777 -4.6016 -1.8125 23 6 3.4871 -3.6074 -0.6502 24 1 -0.3633 -0.0919 1.0236 25 1 -0.3633 0.9324 -0.4322 26 1 -0.3634 -0.8404 -0.5913 27 1 0.0018 3.0486 1.5215 28 1 0.3305 -2.4435 0.1176 29 1 1.8793 -5.3397 1.0739 30 1 0.3433 -4.7469 0.3929 31 1 1.1780 -6.8408 -0.7338 32 1 1.0120 -5.4655 -1.8519 33 1 3.6127 -6.2957 -0.4840 34 1 5.2677 -7.4294 -1.9697 35 1 4.8333 -7.8206 -3.6510 36 1 5.0838 -6.1261 -3.1679 37 1 1.6437 -8.2593 -1.7822 38 1 2.8241 -9.0666 -2.8417 39 1 3.2588 -8.6751 -1.1604 40 1 2.8167 -5.5424 -4.0407 41 1 2.5659 -7.2375 -4.5234 42 1 1.3854 -6.4299 -3.4643 43 1 2.9774 -4.2405 -2.6476 44 1 4.6167 -4.6993 -2.1274 45 1 3.7659 -2.6123 -0.9971 46 1 4.1567 -3.9162 0.1525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268813936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:49 Heat of formation + Delta-G solvation = -36.351808 kcal Electronic energy + Delta-G solvation = -22673.046345 eV Core-core repulsion = 19562.373287 eV Total energy + Delta-G solvation = -3110.673058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.66646 -38.34449 -35.77820 -34.46965 -31.72245 -30.93479 -30.85542 -27.40554 -27.33721 -26.76115 -25.86105 -24.16379 -22.44527 -21.70603 -19.70500 -18.36710 -17.31508 -16.85257 -16.04516 -15.40317 -14.75025 -14.45323 -14.27520 -14.13281 -13.95236 -13.86613 -13.55555 -13.05435 -12.71322 -12.65400 -12.34364 -12.12867 -11.88058 -11.75504 -11.64827 -11.55013 -11.46056 -11.20961 -11.07348 -10.93638 -10.90822 -10.77485 -10.51742 -10.32834 -10.27716 -10.25600 -9.83329 -9.72958 -8.99005 -8.29920 -7.97597 -7.57578 -6.31880 -3.84118 2.20158 3.19564 3.25560 3.31932 4.15044 4.43935 4.66630 4.68829 4.76329 4.94406 5.07577 5.21823 5.26978 5.30887 5.47641 5.50144 5.55437 5.57942 5.61049 5.67982 5.72716 5.76202 5.85274 5.91050 5.93094 5.98028 6.03296 6.08557 6.13975 6.16602 6.23127 6.32345 6.34675 6.43924 6.46309 6.50828 6.71314 6.86104 6.92431 7.20168 7.25284 7.40121 7.56401 8.21759 8.54981 9.23666 9.47538 10.09077 10.72189 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.003594 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.042125 B = 7787.860890 C = 8147.755797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.439 5.439 3 C -0.301 4.301 4 H 0.099 0.901 5 C 0.028 3.972 6 N -0.880 5.880 7 Si 0.927 3.073 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.471 3.529 12 O -0.588 6.588 13 C -0.193 4.193 14 C -0.071 4.071 15 C -0.085 4.085 16 C -0.112 4.112 17 C -0.076 4.076 18 C -0.066 4.066 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.104 4.104 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.118 0.882 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -17.146 -6.190 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.155 5.155 3 C -0.429 4.429 4 H 0.117 0.883 5 C -0.175 4.175 6 N -0.519 5.519 7 Si 0.754 3.246 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.192 1.192 11 C 0.263 3.737 12 O -0.476 6.476 13 C -0.214 4.214 14 C -0.074 4.074 15 C -0.122 4.122 16 C -0.150 4.150 17 C -0.095 4.095 18 C -0.066 4.066 19 C -0.201 4.201 20 C -0.200 4.200 21 C -0.202 4.202 22 C -0.149 4.149 23 C -0.140 4.140 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.516 -16.945 -6.095 18.016 hybrid contribution -0.067 0.875 0.133 0.888 sum 0.448 -16.070 -5.962 17.146 Atomic orbital electron populations 1.21499 0.81331 0.99991 1.00352 1.43524 1.05522 1.04914 1.61574 1.19704 1.00873 0.84395 1.37925 0.88325 1.25413 0.96575 1.00264 0.95257 1.69966 1.18218 1.29705 1.33982 0.85889 0.79764 0.81228 0.77734 1.20414 1.20903 1.19242 1.18242 0.87460 0.83742 0.84241 1.90464 1.13711 1.86693 1.56773 1.22633 0.99152 0.93381 1.06229 1.22325 0.96541 0.93213 0.95312 1.20830 0.99991 0.93424 0.97981 1.21793 0.96355 0.98710 0.98092 1.21259 0.96164 0.94969 0.97081 1.20557 0.95383 0.95031 0.95583 1.21934 0.95385 1.01787 1.00974 1.21934 1.01161 0.96122 1.00762 1.21969 1.00225 1.01183 0.96819 1.21758 1.00560 0.94012 0.98584 1.21302 0.93009 1.02828 0.96887 0.93230 0.90561 0.95526 0.92205 0.86952 0.90889 0.91594 0.91908 0.91717 0.91460 0.92862 0.93165 0.92119 0.92363 0.93151 0.92888 0.92191 0.93317 0.92440 0.92095 0.91916 0.86429 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.59 8.23 59.85 0.49 3.09 16 2 N -0.44 -11.64 3.01 -123.60 -0.37 -12.01 16 3 C -0.30 -8.54 9.23 -15.02 -0.14 -8.68 16 4 H 0.10 2.91 7.44 -52.49 -0.39 2.52 16 5 C 0.03 0.76 5.09 -17.45 -0.09 0.67 16 6 N -0.88 -23.79 10.74 55.50 0.60 -23.19 16 7 Si 0.93 20.95 29.57 -169.99 -5.03 15.93 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.47 11.97 7.38 -12.73 -0.09 11.88 16 12 O -0.59 -16.36 13.09 5.23 0.07 -16.29 16 13 C -0.19 -3.90 8.74 -37.83 -0.33 -4.23 16 14 C -0.07 -1.24 5.37 -100.57 -0.54 -1.78 16 15 C -0.09 -1.14 6.02 -27.49 -0.17 -1.31 16 16 C -0.11 -1.28 4.52 -26.42 -0.12 -1.40 16 17 C -0.08 -0.88 1.45 -90.45 -0.13 -1.01 16 18 C -0.07 -0.64 0.57 -154.51 -0.09 -0.73 16 19 C -0.14 -1.35 8.13 37.16 0.30 -1.05 16 20 C -0.14 -1.23 8.12 37.16 0.30 -0.93 16 21 C -0.14 -1.41 7.78 37.16 0.29 -1.12 16 22 C -0.11 -1.54 4.50 -26.63 -0.12 -1.66 16 23 C -0.10 -1.83 5.20 -27.48 -0.14 -1.97 16 24 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 25 H 0.08 1.85 6.70 -51.93 -0.35 1.50 16 26 H 0.03 0.52 6.51 -51.93 -0.34 0.18 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 28 H 0.11 2.05 6.40 -52.48 -0.34 1.71 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.83 7.94 -51.92 -0.41 0.42 16 31 H 0.06 0.62 6.24 -51.93 -0.32 0.29 16 32 H 0.06 0.76 6.63 -51.93 -0.34 0.42 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 37 H 0.06 0.49 6.33 -51.93 -0.33 0.16 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 43 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 44 H 0.06 0.81 6.24 -51.93 -0.32 0.49 16 45 H 0.12 2.54 5.05 -51.95 -0.26 2.28 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -30.00 340.84 -7.85 -37.86 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.68 Total: 2.81 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.58 Total: -10.24 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.22 Total: -35.21 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.07 Total: -16.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.00 -7.85 -37.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268813936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.507 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds