Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 N 1.46904 * 109.47095 * 119.99977 * 2 1 3 5 5 C 1.46900 * 110.99635 * 316.20681 * 4 2 1 6 6 C 1.50704 * 109.47131 * 94.70105 * 5 4 2 7 7 C 1.34512 * 125.79284 * 96.05475 * 6 5 4 8 8 C 1.41387 * 106.83990 * 180.02562 * 7 6 5 9 9 C 1.34516 * 106.84074 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78382 * 275.75213 * 6 5 4 11 11 C 1.46896 * 110.99757 * 192.25330 * 4 2 1 12 12 C 1.52993 * 109.47110 * 276.51273 * 11 4 2 13 13 C 1.53004 * 109.47208 * 305.98938 * 12 11 4 14 14 C 1.53002 * 109.47324 * 65.99272 * 12 11 4 15 15 C 1.53006 * 109.47130 * 185.99297 * 12 11 4 16 16 C 1.50699 * 109.47125 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00106 * 359.97438 * 16 15 12 18 18 C 1.37873 * 120.00006 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00549 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99962 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47068 * 90.00113 * 20 18 16 22 22 H 1.48506 * 109.47083 * 210.00029 * 20 18 16 23 23 H 1.48500 * 109.47014 * 329.99687 * 20 18 16 24 24 H 1.09002 * 109.46975 * 309.73065 * 1 2 3 25 25 H 1.08998 * 109.46872 * 69.73112 * 1 2 3 26 26 H 1.09001 * 109.46912 * 189.73397 * 1 2 3 27 27 H 1.08995 * 109.47035 * 239.99958 * 2 1 3 28 28 H 1.08996 * 109.47279 * 193.14440 * 3 2 1 29 29 H 1.09005 * 109.47407 * 313.13796 * 3 2 1 30 30 H 1.08998 * 109.47321 * 73.14297 * 3 2 1 31 31 H 1.09005 * 109.47090 * 214.69436 * 5 4 2 32 32 H 1.08996 * 109.47977 * 334.69796 * 5 4 2 33 33 H 1.07994 * 126.57872 * 0.04003 * 7 6 5 34 34 H 1.08004 * 126.57688 * 179.97438 * 8 7 6 35 35 H 1.08001 * 125.78882 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46988 * 36.51676 * 11 4 2 37 37 H 1.08998 * 109.46787 * 156.51492 * 11 4 2 38 38 H 1.08997 * 109.46763 * 60.00115 * 13 12 11 39 39 H 1.09000 * 109.46845 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47271 * 300.00191 * 13 12 11 41 41 H 1.08995 * 109.46933 * 36.48126 * 14 12 11 42 42 H 1.08998 * 109.47019 * 156.48117 * 14 12 11 43 43 H 1.08997 * 109.46998 * 276.48271 * 14 12 11 44 44 H 1.09002 * 109.46897 * 299.99836 * 15 12 11 45 45 H 1.08999 * 109.47180 * 59.99912 * 15 12 11 46 46 H 0.97000 * 120.00554 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.2618 -0.2837 2.3896 6 6 0.1433 -1.2636 2.6340 7 6 0.1849 -2.3104 3.4777 8 6 -1.0706 -2.9551 3.3927 9 6 -1.8045 -2.2633 2.5026 10 8 -1.0661 -1.2365 2.0505 11 6 3.4587 -0.4652 1.3879 12 6 4.2482 -1.4561 0.5303 13 6 3.7897 -2.8815 0.8453 14 6 4.0035 -1.1572 -0.9502 15 6 5.7408 -1.3208 0.8380 16 6 6.5185 -2.2964 -0.0072 17 1 5.9999 -2.9482 -0.6948 18 6 7.8919 -2.3570 0.0972 19 7 8.5706 -3.2088 -0.6400 20 14 8.7888 -1.2293 1.2860 21 1 8.9074 -1.8965 2.6074 22 1 10.1447 -0.9315 0.7584 23 1 8.0276 0.0368 1.4372 24 1 -0.3633 0.6569 0.7904 25 1 -0.3633 0.3560 -0.9640 26 1 -0.3633 -1.0129 0.1738 27 1 1.8934 -0.5138 -0.8899 28 1 3.1046 1.4515 -0.2337 29 1 1.4987 2.0193 -0.7499 30 1 1.8802 1.8844 0.9835 31 1 1.9251 -0.2663 3.2545 32 1 0.8452 0.7110 2.2312 33 1 1.0174 -2.6023 4.1006 34 1 -1.3809 -3.8343 3.9380 35 1 -2.8173 -2.4920 2.2054 36 1 3.7079 0.5530 1.0891 37 1 3.7148 -0.6088 2.4376 38 1 2.7264 -2.9779 0.6261 39 1 4.3519 -3.5874 0.2339 40 1 3.9640 -3.0945 1.9000 41 1 3.9236 -0.0799 -1.0949 42 1 4.8346 -1.5425 -1.5408 43 1 3.0780 -1.6363 -1.2695 44 1 6.0674 -0.3054 0.6136 45 1 5.9151 -1.5338 1.8927 46 1 9.5369 -3.2511 -0.5668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271026423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = 20.728309 kcal Electronic energy + Delta-G solvation = -23344.060741 eV Core-core repulsion = 20235.862862 eV Total energy + Delta-G solvation = -3108.197879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49386 -39.23345 -35.77912 -33.08774 -32.28183 -31.84632 -30.00955 -27.76827 -27.34204 -26.19898 -25.69663 -24.60838 -22.12220 -21.64381 -20.73832 -19.28591 -17.83552 -17.34421 -16.71122 -16.22464 -15.98239 -15.08827 -14.64492 -14.10853 -13.89976 -13.79526 -13.32379 -12.94358 -12.82518 -12.73378 -12.64231 -12.52997 -12.16246 -12.01946 -11.86787 -11.53050 -11.39047 -11.19973 -10.99145 -10.88819 -10.78110 -10.60183 -10.27245 -10.08780 -9.78514 -9.73239 -9.59619 -9.20721 -8.90978 -8.47228 -8.37813 -7.97807 -5.97471 -3.93185 1.80840 2.70955 3.08634 3.33397 3.41098 3.43964 4.17831 4.50163 4.76446 4.94695 5.02980 5.11489 5.16065 5.31006 5.34822 5.35999 5.44279 5.57836 5.61419 5.71211 5.84069 5.86336 5.88970 5.98008 6.02707 6.11078 6.12009 6.21002 6.27448 6.39224 6.41925 6.52876 6.58918 6.70499 6.79668 6.87583 7.14933 7.20334 7.23429 7.25822 7.30599 7.40261 7.43656 7.56531 7.88583 8.63145 9.09154 9.65745 11.15700 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.004556 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.412317 B = 6144.613159 C = 6581.946694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 C -0.187 4.187 4 N -0.519 5.519 5 C 0.124 3.876 6 C 0.015 3.985 7 C -0.204 4.204 8 C -0.212 4.212 9 C -0.057 4.057 10 O -0.171 6.171 11 C 0.054 3.946 12 C -0.041 4.041 13 C -0.114 4.114 14 C -0.137 4.137 15 C -0.004 4.004 16 C -0.505 4.505 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.875 3.125 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.196 0.804 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 6.751 5.802 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.044 4.044 3 C -0.245 4.245 4 N -0.242 5.242 5 C -0.004 4.004 6 C -0.036 4.036 7 C -0.224 4.224 8 C -0.231 4.231 9 C -0.124 4.124 10 O -0.067 6.067 11 C -0.073 4.073 12 C -0.041 4.041 13 C -0.172 4.172 14 C -0.194 4.194 15 C -0.042 4.042 16 C -0.543 4.543 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.212 0.788 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.027 0.973 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.365 6.417 5.483 21.124 hybrid contribution 0.754 1.096 0.972 1.647 sum -18.611 7.512 6.454 21.082 Atomic orbital electron populations 1.22120 0.94720 1.03032 1.00933 1.22139 0.94880 0.92344 0.95006 1.22531 1.02461 0.98048 1.01482 1.62140 1.03726 1.57108 1.01247 1.20616 0.91095 0.93580 0.95075 1.22375 0.85266 1.00082 0.95911 1.21531 0.99062 0.97408 1.04399 1.21788 0.95119 1.03076 1.03123 1.23924 0.98111 0.90133 1.00268 1.84171 1.23143 1.43886 1.55496 1.22649 0.85359 0.98972 1.00318 1.20333 0.95363 0.94429 0.93987 1.21599 0.99469 0.96006 1.00105 1.22074 1.01125 0.99272 0.96935 1.19639 0.91193 0.96989 0.96385 1.21137 0.91212 1.19535 1.22414 0.90380 1.25011 0.97718 0.95251 0.95586 1.69909 1.07185 1.36777 1.40709 0.86862 0.79054 0.82097 0.81712 1.20497 1.21631 1.19184 0.92968 0.92807 0.90971 0.88048 0.91361 0.92383 0.93110 0.88785 0.92139 0.83842 0.83990 0.78761 0.93501 0.91777 0.93430 0.92441 0.94633 0.94432 0.90849 0.93884 0.97028 0.97316 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.29 37.16 0.27 -1.48 16 2 C 0.06 0.82 2.47 -67.71 -0.17 0.65 16 3 C -0.19 -2.19 7.83 37.16 0.29 -1.90 16 4 N -0.52 -7.19 3.34 -228.09 -0.76 -7.95 16 5 C 0.12 1.51 4.94 -4.97 -0.02 1.48 16 6 C 0.01 0.19 6.17 -35.62 -0.22 -0.03 16 7 C -0.20 -2.59 10.81 -39.70 -0.43 -3.02 16 8 C -0.21 -2.38 10.91 -39.70 -0.43 -2.81 16 9 C -0.06 -0.59 12.09 29.42 0.36 -0.24 16 10 O -0.17 -2.10 7.10 5.69 0.04 -2.06 16 11 C 0.05 0.84 3.95 -3.83 -0.02 0.83 16 12 C -0.04 -0.77 0.61 -154.51 -0.09 -0.87 16 13 C -0.11 -2.23 7.88 37.16 0.29 -1.94 16 14 C -0.14 -2.53 7.09 37.16 0.26 -2.27 16 15 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 16 C -0.51 -13.88 7.87 -34.44 -0.27 -14.15 16 17 H 0.08 2.31 6.17 -52.49 -0.32 1.98 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.91 -27.78 13.96 55.43 0.77 -27.01 16 20 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.05 0.59 6.04 -51.93 -0.31 0.27 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.94 5.87 -51.93 -0.30 0.63 16 27 H 0.10 1.44 4.80 -51.93 -0.25 1.19 16 28 H 0.07 0.89 5.18 -51.93 -0.27 0.62 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.05 0.56 6.81 -51.93 -0.35 0.21 16 31 H 0.09 1.06 7.18 -51.93 -0.37 0.69 16 32 H 0.06 0.68 5.33 -51.93 -0.28 0.40 16 33 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.05 0.72 5.12 -51.93 -0.27 0.45 16 37 H 0.06 0.99 7.29 -51.93 -0.38 0.61 16 38 H 0.05 0.87 7.43 -51.93 -0.39 0.49 16 39 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.63 5.66 -51.93 -0.29 0.33 16 42 H 0.07 1.58 6.23 -51.93 -0.32 1.25 16 43 H 0.04 0.74 6.28 -51.93 -0.33 0.41 16 44 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 45 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -30.14 334.73 -7.18 -37.32 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.25 Total: 1.80 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -0.36 Total: -24.17 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.01 Total: -34.96 kcal Atomic # 8 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.14 -7.18 -37.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271026423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.051 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds