Wall clock time and date at job start Tue Mar 31 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 N 1.46904 * 109.47095 * 119.99977 * 2 1 3 5 5 C 1.46900 * 110.99635 * 316.20681 * 4 2 1 6 6 C 1.50704 * 109.47131 * 94.70105 * 5 4 2 7 7 C 1.34512 * 125.79284 * 96.05475 * 6 5 4 8 8 C 1.41387 * 106.83990 * 180.02562 * 7 6 5 9 9 C 1.34516 * 106.84074 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78382 * 275.75213 * 6 5 4 11 11 C 1.46896 * 110.99757 * 192.25330 * 4 2 1 12 12 C 1.52993 * 109.47110 * 276.51273 * 11 4 2 13 13 C 1.53004 * 109.47208 * 305.98938 * 12 11 4 14 14 C 1.53002 * 109.47324 * 65.99272 * 12 11 4 15 15 C 1.53006 * 109.47130 * 185.99297 * 12 11 4 16 16 C 1.50699 * 109.47125 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00106 * 359.97438 * 16 15 12 18 18 C 1.37873 * 120.00006 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00549 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99962 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47068 * 90.00113 * 20 18 16 22 22 H 1.48506 * 109.47083 * 210.00029 * 20 18 16 23 23 H 1.48500 * 109.47014 * 329.99687 * 20 18 16 24 24 H 1.09002 * 109.46975 * 309.73065 * 1 2 3 25 25 H 1.08998 * 109.46872 * 69.73112 * 1 2 3 26 26 H 1.09001 * 109.46912 * 189.73397 * 1 2 3 27 27 H 1.08995 * 109.47035 * 239.99958 * 2 1 3 28 28 H 1.08996 * 109.47279 * 193.14440 * 3 2 1 29 29 H 1.09005 * 109.47407 * 313.13796 * 3 2 1 30 30 H 1.08998 * 109.47321 * 73.14297 * 3 2 1 31 31 H 1.09005 * 109.47090 * 214.69436 * 5 4 2 32 32 H 1.08996 * 109.47977 * 334.69796 * 5 4 2 33 33 H 1.07994 * 126.57872 * 0.04003 * 7 6 5 34 34 H 1.08004 * 126.57688 * 179.97438 * 8 7 6 35 35 H 1.08001 * 125.78882 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46988 * 36.51676 * 11 4 2 37 37 H 1.08998 * 109.46787 * 156.51492 * 11 4 2 38 38 H 1.08997 * 109.46763 * 60.00115 * 13 12 11 39 39 H 1.09000 * 109.46845 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47271 * 300.00191 * 13 12 11 41 41 H 1.08995 * 109.46933 * 36.48126 * 14 12 11 42 42 H 1.08998 * 109.47019 * 156.48117 * 14 12 11 43 43 H 1.08997 * 109.46998 * 276.48271 * 14 12 11 44 44 H 1.09002 * 109.46897 * 299.99836 * 15 12 11 45 45 H 1.08999 * 109.47180 * 59.99912 * 15 12 11 46 46 H 0.97000 * 120.00554 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.2618 -0.2837 2.3896 6 6 0.1433 -1.2636 2.6340 7 6 0.1849 -2.3104 3.4777 8 6 -1.0706 -2.9551 3.3927 9 6 -1.8045 -2.2633 2.5026 10 8 -1.0661 -1.2365 2.0505 11 6 3.4587 -0.4652 1.3879 12 6 4.2482 -1.4561 0.5303 13 6 3.7897 -2.8815 0.8453 14 6 4.0035 -1.1572 -0.9502 15 6 5.7408 -1.3208 0.8380 16 6 6.5185 -2.2964 -0.0072 17 1 5.9999 -2.9482 -0.6948 18 6 7.8919 -2.3570 0.0972 19 7 8.5706 -3.2088 -0.6400 20 14 8.7888 -1.2293 1.2860 21 1 8.9074 -1.8965 2.6074 22 1 10.1447 -0.9315 0.7584 23 1 8.0276 0.0368 1.4372 24 1 -0.3633 0.6569 0.7904 25 1 -0.3633 0.3560 -0.9640 26 1 -0.3633 -1.0129 0.1738 27 1 1.8934 -0.5138 -0.8899 28 1 3.1046 1.4515 -0.2337 29 1 1.4987 2.0193 -0.7499 30 1 1.8802 1.8844 0.9835 31 1 1.9251 -0.2663 3.2545 32 1 0.8452 0.7110 2.2312 33 1 1.0174 -2.6023 4.1006 34 1 -1.3809 -3.8343 3.9380 35 1 -2.8173 -2.4920 2.2054 36 1 3.7079 0.5530 1.0891 37 1 3.7148 -0.6088 2.4376 38 1 2.7264 -2.9779 0.6261 39 1 4.3519 -3.5874 0.2339 40 1 3.9640 -3.0945 1.9000 41 1 3.9236 -0.0799 -1.0949 42 1 4.8346 -1.5425 -1.5408 43 1 3.0780 -1.6363 -1.2695 44 1 6.0674 -0.3054 0.6136 45 1 5.9151 -1.5338 1.8927 46 1 9.5369 -3.2511 -0.5668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271026423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:23 Heat of formation + Delta-G solvation = 3.795538 kcal Electronic energy + Delta-G solvation = -23344.795001 eV Core-core repulsion = 20235.862862 eV Total energy + Delta-G solvation = -3108.932139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.35870 -40.41907 -37.27905 -34.37540 -33.97315 -32.77696 -31.17787 -29.53001 -28.45730 -27.67577 -26.82641 -25.84769 -23.90072 -22.50976 -21.68351 -20.31433 -19.36476 -18.80639 -18.21132 -17.24801 -16.95363 -16.33053 -16.06981 -15.52177 -15.36809 -14.89963 -14.77754 -14.42447 -14.21140 -13.90322 -13.70253 -13.63912 -13.44614 -13.20150 -12.91315 -12.81198 -12.76272 -12.57112 -12.42051 -12.30117 -12.20063 -12.05548 -11.82751 -11.68307 -11.45621 -11.17780 -10.84288 -10.81143 -10.67210 -10.66087 -9.26917 -9.04594 -8.19155 -6.19111 0.93834 1.37755 1.39092 1.50191 1.83117 2.26021 2.41682 3.13102 3.16088 3.88123 3.99877 4.12365 4.16394 4.25583 4.27307 4.29226 4.39466 4.47399 4.54085 4.57910 4.73740 4.75680 4.86756 4.92229 4.95127 4.98360 5.01753 5.05728 5.13724 5.16247 5.19230 5.26056 5.30312 5.37338 5.48018 5.50168 5.53735 5.60636 5.69322 5.73553 5.81391 5.88732 6.21477 6.25842 6.39768 6.46127 6.88245 7.42949 8.97335 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.004556 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.412317 B = 6144.613159 C = 6581.946694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 C -0.181 4.181 4 N -0.529 5.529 5 C 0.127 3.873 6 C 0.000 4.000 7 C -0.221 4.221 8 C -0.230 4.230 9 C -0.051 4.051 10 O -0.178 6.178 11 C 0.064 3.936 12 C -0.040 4.040 13 C -0.102 4.102 14 C -0.127 4.127 15 C -0.001 4.001 16 C -0.501 4.501 17 H 0.041 0.959 18 C 0.000 4.000 19 N -0.957 5.957 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.246 1.246 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.231 0.769 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.021 0.979 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.286 8.812 7.233 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.240 4.240 4 N -0.252 5.252 5 C 0.000 4.000 6 C -0.051 4.051 7 C -0.241 4.241 8 C -0.249 4.249 9 C -0.119 4.119 10 O -0.075 6.075 11 C -0.063 4.063 12 C -0.041 4.041 13 C -0.159 4.159 14 C -0.183 4.183 15 C -0.039 4.039 16 C -0.539 4.539 17 H 0.059 0.941 18 C -0.195 4.195 19 N -0.599 5.599 20 Si 0.766 3.234 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.169 1.169 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.285 8.489 6.921 23.938 hybrid contribution 1.229 0.350 0.466 1.360 sum -20.057 8.839 7.387 23.129 Atomic orbital electron populations 1.22015 0.93590 1.02353 1.01816 1.22125 0.95712 0.92809 0.93890 1.22458 1.01656 0.97344 1.02512 1.61980 1.02748 1.58047 1.02445 1.20629 0.90927 0.94047 0.94400 1.22447 0.85747 1.00480 0.96411 1.21762 0.99826 0.97862 1.04679 1.22079 0.94855 1.03979 1.03971 1.24651 0.99107 0.88936 0.99157 1.84167 1.23125 1.44523 1.55635 1.22391 0.86251 0.97996 0.99627 1.20266 0.93512 0.95209 0.95076 1.21461 0.99537 0.95672 0.99271 1.21954 0.99973 1.00394 0.96025 1.19589 0.93387 0.95544 0.95401 1.21425 0.91526 1.19284 1.21707 0.94101 1.25929 0.98861 0.97062 0.97676 1.70073 1.07488 1.39203 1.43128 0.85791 0.77671 0.80717 0.79231 1.19706 1.21627 1.16919 0.92369 0.91616 0.92364 0.89676 0.92629 0.91008 0.92162 0.88005 0.90833 0.83908 0.82423 0.75306 0.92518 0.91166 0.92229 0.95950 0.94599 0.92520 0.94797 0.92728 0.96662 0.96991 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.29 71.98 0.52 -2.37 16 2 C 0.06 1.45 2.47 44.92 0.11 1.56 16 3 C -0.18 -3.71 7.83 71.98 0.56 -3.15 16 4 N -0.53 -13.50 3.34 -875.53 -2.92 -16.42 16 5 C 0.13 2.77 4.94 85.56 0.42 3.19 16 6 C 0.00 0.00 6.17 24.83 0.15 0.15 16 7 C -0.22 -5.29 10.81 22.19 0.24 -5.05 16 8 C -0.23 -4.73 10.91 22.19 0.24 -4.49 16 9 C -0.05 -0.94 12.09 66.97 0.81 -0.13 16 10 O -0.18 -3.96 7.10 -2.54 -0.02 -3.98 16 11 C 0.06 1.88 3.95 86.30 0.34 2.22 16 12 C -0.04 -1.50 0.61 -52.18 -0.03 -1.53 16 13 C -0.10 -4.01 7.88 71.98 0.57 -3.44 16 14 C -0.13 -4.67 7.09 71.98 0.51 -4.16 16 15 C 0.00 -0.06 3.11 29.85 0.09 0.03 16 16 C -0.50 -28.32 7.87 25.60 0.20 -28.12 16 17 H 0.04 2.56 6.17 -2.91 -0.02 2.54 16 18 C 0.00 0.01 5.47 84.65 0.46 0.47 16 19 N -0.96 -60.65 13.96 21.45 0.30 -60.35 16 20 Si 0.94 44.60 27.47 68.60 1.88 46.49 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 24 H 0.06 1.13 6.04 -2.39 -0.01 1.12 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.38 5.87 -2.39 -0.01 1.37 16 27 H 0.09 2.26 4.80 -2.39 -0.01 2.25 16 28 H 0.05 1.29 5.18 -2.39 -0.01 1.27 16 29 H 0.07 1.27 8.08 -2.38 -0.02 1.25 16 30 H 0.06 1.12 6.81 -2.39 -0.02 1.11 16 31 H 0.10 2.03 7.18 -2.38 -0.02 2.02 16 32 H 0.07 1.40 5.33 -2.39 -0.01 1.39 16 33 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.06 1.57 5.12 -2.39 -0.01 1.55 16 37 H 0.07 1.98 7.29 -2.39 -0.02 1.96 16 38 H 0.06 2.17 7.43 -2.39 -0.02 2.15 16 39 H 0.02 1.00 6.62 -2.39 -0.02 0.98 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.84 5.66 -2.39 -0.01 1.82 16 42 H 0.03 1.50 6.23 -2.39 -0.01 1.48 16 43 H 0.05 1.86 6.28 -2.39 -0.02 1.85 16 44 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 45 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 46 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -66.50 334.73 5.36 -61.13 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.91 Total: 17.95 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 5.21 Total: -44.82 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.62 Total: -76.77 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.02 Total: -3.98 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -66.50 5.36 -61.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271026423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.929 kcal (2) G-P(sol) polarization free energy of solvation -66.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds