Wall clock time and date at job start Tue Mar 31 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46846 * 2 1 4 4 C 1.52994 * 109.47405 * 120.00026 * 2 1 3 5 5 C 1.52993 * 109.47123 * 64.99858 * 4 2 1 6 6 C 1.53003 * 109.47258 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.47133 * 304.99960 * 6 5 4 8 8 N 1.46898 * 109.47270 * 65.00137 * 6 5 4 9 9 C 1.46896 * 111.00071 * 205.00259 * 8 6 5 10 10 C 1.53001 * 109.47445 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47348 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00180 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99952 * 179.97438 * 12 11 10 15 15 N 1.31503 * 119.99954 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99670 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46948 * 90.00225 * 16 14 12 18 18 H 1.48501 * 109.46577 * 209.99764 * 16 14 12 19 19 H 1.48498 * 109.47385 * 329.99548 * 16 14 12 20 20 C 1.50706 * 109.47349 * 185.00359 * 6 5 4 21 21 C 1.41376 * 126.57746 * 100.27006 * 20 6 5 22 22 C 1.34517 * 106.83881 * 180.16927 * 21 20 6 23 23 O 1.34311 * 108.41913 * 359.62280 * 22 21 20 24 24 C 1.34305 * 109.47478 * 0.24221 * 23 22 21 25 25 H 1.09000 * 109.47001 * 60.00360 * 1 2 3 26 26 H 1.08996 * 109.46630 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47353 * 300.00084 * 1 2 3 28 28 H 1.09001 * 109.47093 * 240.00249 * 2 1 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47027 * 299.99624 * 3 2 1 31 31 H 1.08995 * 109.47213 * 59.99831 * 3 2 1 32 32 H 1.09006 * 109.47165 * 305.00158 * 4 2 1 33 33 H 1.09001 * 109.47645 * 185.00368 * 4 2 1 34 34 H 1.09000 * 109.46985 * 60.00526 * 5 4 2 35 35 H 1.08998 * 109.47344 * 300.00206 * 5 4 2 36 36 H 1.00903 * 111.00015 * 328.95621 * 8 6 5 37 37 H 1.09002 * 109.47210 * 299.99818 * 9 8 6 38 38 H 1.09004 * 109.47178 * 60.00083 * 9 8 6 39 39 H 1.09002 * 109.46893 * 300.00166 * 10 9 8 40 40 H 1.09004 * 109.46739 * 59.99968 * 10 9 8 41 41 H 1.09002 * 109.47321 * 299.99980 * 11 10 9 42 42 H 1.09004 * 109.47165 * 60.00304 * 11 10 9 43 43 H 0.97005 * 120.00023 * 179.97438 * 15 14 12 44 44 H 1.07998 * 126.58562 * 0.02841 * 21 20 6 45 45 H 1.08002 * 125.79423 * 179.89440 * 22 21 20 46 46 H 1.07999 * 125.79059 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1448 -2.9165 2.4375 7 1 3.2201 -2.7646 2.5316 8 7 1.4683 -2.3768 3.6244 9 6 2.2858 -2.5695 4.8296 10 6 1.5502 -1.9956 6.0421 11 6 2.4014 -2.1969 7.2974 12 6 1.6765 -1.6320 8.4918 13 1 0.7059 -1.1748 8.3679 14 6 2.2523 -1.6990 9.7428 15 7 1.6200 -1.2057 10.7850 16 14 3.9314 -2.4892 9.9570 17 1 4.9878 -1.4575 9.7987 18 1 4.0261 -3.0909 11.3113 19 1 4.1151 -3.5472 8.9313 20 6 1.8542 -4.3906 2.3204 21 6 2.7670 -5.4018 1.9422 22 6 2.0916 -6.5649 1.9653 23 8 0.8275 -6.3142 2.3435 24 6 0.6778 -4.9972 2.5602 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 2.0700 -2.6549 0.3002 35 1 0.5490 -2.2723 1.1420 36 1 1.2361 -1.4032 3.4969 37 1 2.4629 -3.6342 4.9821 38 1 3.2397 -2.0564 4.7074 39 1 1.3735 -0.9309 5.8894 40 1 0.5961 -2.5084 6.1645 41 1 2.5777 -3.2617 7.4499 42 1 3.3557 -1.6843 7.1753 43 1 2.0250 -1.2531 11.6652 44 1 3.8064 -5.2663 1.6821 45 1 2.4981 -7.5363 1.7252 46 1 -0.2325 -4.5082 2.8741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286075616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:46 Heat of formation + Delta-G solvation = -21.857381 kcal Electronic energy + Delta-G solvation = -21734.393880 eV Core-core repulsion = 18624.349347 eV Total energy + Delta-G solvation = -3110.044533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46511 -38.24395 -36.17617 -34.24003 -32.68260 -31.76739 -30.19731 -29.32230 -27.37389 -26.74677 -25.15271 -22.37395 -22.10520 -21.48266 -20.13752 -20.09398 -19.52087 -17.37131 -16.70384 -15.93892 -15.74070 -15.44654 -14.94740 -14.49835 -14.41294 -14.14502 -13.98925 -13.65588 -13.16104 -12.76660 -12.73142 -12.61681 -12.37633 -12.24871 -12.05667 -11.82151 -11.70386 -11.43656 -11.28221 -10.94602 -10.80313 -10.74486 -10.70559 -10.56722 -9.91949 -9.75166 -9.62573 -9.45598 -9.13538 -8.50555 -8.42217 -8.25550 -6.01016 -3.98428 1.87849 2.66501 3.24305 3.32595 3.39955 3.44623 4.27088 4.48291 4.54233 4.67949 4.69051 4.88632 5.02767 5.12544 5.17689 5.22066 5.33167 5.38924 5.42362 5.48146 5.55258 5.61752 5.68328 5.71692 5.77604 5.79925 5.88731 5.90974 5.94041 6.03364 6.07723 6.21211 6.23069 6.23901 6.25915 6.55732 6.59853 6.64672 6.95591 7.15729 7.31474 7.40037 7.48170 7.63299 7.83981 8.58453 9.04627 9.61956 11.12609 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004119 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.503802 B = 6795.665652 C = 8473.218215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.120 4.120 5 C -0.115 4.115 6 C 0.155 3.845 7 H 0.048 0.952 8 N -0.686 5.686 9 C 0.060 3.940 10 C -0.098 4.098 11 C -0.013 4.013 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.171 4.171 21 C -0.209 4.209 22 C -0.053 4.053 23 O -0.183 6.183 24 C -0.010 4.010 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.342 0.658 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.015 0.985 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.142 0.858 45 H 0.197 0.803 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -3.353 -25.018 25.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.158 4.158 5 C -0.153 4.153 6 C 0.045 3.955 7 H 0.066 0.934 8 N -0.319 5.319 9 C -0.069 4.069 10 C -0.136 4.136 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.173 4.173 21 C -0.229 4.229 22 C -0.120 4.120 23 O -0.078 6.078 24 C -0.078 4.078 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.162 0.838 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.160 0.840 45 H 0.213 0.787 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.598 -4.092 -24.684 25.028 hybrid contribution 1.894 0.384 0.213 1.944 sum 2.492 -3.707 -24.471 24.875 Atomic orbital electron populations 1.21901 0.95154 1.01976 1.01683 1.21082 0.96031 0.96008 0.98153 1.21858 1.00858 0.96136 1.01781 1.21741 1.00796 0.95156 0.98117 1.21798 1.02106 0.94428 0.96979 1.19764 0.96374 0.88917 0.90403 0.93391 1.60510 1.45890 1.23486 1.01991 1.22154 0.94056 1.00921 0.89774 1.21432 0.99518 0.99558 0.93119 1.19538 0.95355 0.96589 0.93585 1.21157 1.05601 1.38141 0.90675 0.91038 1.25035 0.97519 0.95034 0.95966 1.69916 1.38618 1.46528 0.99367 0.86779 0.84901 0.80246 0.77375 1.20380 1.21403 1.19037 1.20310 0.93725 0.96153 1.07071 1.21699 1.00810 0.92499 1.07906 1.23884 0.82439 1.00128 1.05567 1.84075 1.30215 1.26799 1.66740 1.23904 1.00938 0.79520 1.03446 0.93095 0.92328 0.92437 0.91505 0.92850 0.92896 0.92493 0.91532 0.92109 0.91539 0.90705 0.83815 0.91592 0.95903 0.93143 0.92014 0.96681 0.97361 0.92804 0.84047 0.78654 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.95 37.16 0.33 -0.85 16 2 C -0.09 -0.76 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.12 -1.08 4.51 -26.74 -0.12 -1.20 16 5 C -0.12 -1.11 4.54 -26.73 -0.12 -1.23 16 6 C 0.16 1.85 2.51 -68.86 -0.17 1.68 16 7 H 0.05 0.61 7.80 -51.93 -0.40 0.20 16 8 N -0.69 -9.31 6.05 -107.95 -0.65 -9.97 16 9 C 0.06 0.99 5.48 -3.83 -0.02 0.97 16 10 C -0.10 -1.98 5.41 -26.73 -0.14 -2.12 16 11 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 12 C -0.52 -15.10 9.66 -34.43 -0.33 -15.43 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.82 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 16 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 20 C -0.17 -2.15 4.92 -104.74 -0.52 -2.67 16 21 C -0.21 -2.43 10.87 -39.70 -0.43 -2.87 16 22 C -0.05 -0.57 12.09 29.42 0.36 -0.22 16 23 O -0.18 -2.33 10.65 5.68 0.06 -2.27 16 24 C -0.01 -0.13 11.70 29.42 0.34 0.21 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 36 H 0.34 4.33 6.47 -39.29 -0.25 4.08 16 37 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 38 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 42 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -31.57 367.69 -8.27 -39.84 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.36 Total: 1.10 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -0.96 Total: -24.14 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.12 Total: -37.60 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.06 Total: -2.27 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.57 -8.27 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286075616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.980 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds