Wall clock time and date at job start Tue Mar 31 2020 01:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46846 * 2 1 4 4 C 1.52994 * 109.47405 * 120.00026 * 2 1 3 5 5 C 1.52993 * 109.47123 * 64.99858 * 4 2 1 6 6 C 1.53003 * 109.47258 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.47133 * 304.99960 * 6 5 4 8 8 N 1.46898 * 109.47270 * 65.00137 * 6 5 4 9 9 C 1.46896 * 111.00071 * 205.00259 * 8 6 5 10 10 C 1.53001 * 109.47445 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47348 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00180 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99952 * 179.97438 * 12 11 10 15 15 N 1.31503 * 119.99954 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99670 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46948 * 90.00225 * 16 14 12 18 18 H 1.48501 * 109.46577 * 209.99764 * 16 14 12 19 19 H 1.48498 * 109.47385 * 329.99548 * 16 14 12 20 20 C 1.50706 * 109.47349 * 185.00359 * 6 5 4 21 21 C 1.41376 * 126.57746 * 100.27006 * 20 6 5 22 22 C 1.34517 * 106.83881 * 180.16927 * 21 20 6 23 23 O 1.34311 * 108.41913 * 359.62280 * 22 21 20 24 24 C 1.34305 * 109.47478 * 0.24221 * 23 22 21 25 25 H 1.09000 * 109.47001 * 60.00360 * 1 2 3 26 26 H 1.08996 * 109.46630 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47353 * 300.00084 * 1 2 3 28 28 H 1.09001 * 109.47093 * 240.00249 * 2 1 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47027 * 299.99624 * 3 2 1 31 31 H 1.08995 * 109.47213 * 59.99831 * 3 2 1 32 32 H 1.09006 * 109.47165 * 305.00158 * 4 2 1 33 33 H 1.09001 * 109.47645 * 185.00368 * 4 2 1 34 34 H 1.09000 * 109.46985 * 60.00526 * 5 4 2 35 35 H 1.08998 * 109.47344 * 300.00206 * 5 4 2 36 36 H 1.00903 * 111.00015 * 328.95621 * 8 6 5 37 37 H 1.09002 * 109.47210 * 299.99818 * 9 8 6 38 38 H 1.09004 * 109.47178 * 60.00083 * 9 8 6 39 39 H 1.09002 * 109.46893 * 300.00166 * 10 9 8 40 40 H 1.09004 * 109.46739 * 59.99968 * 10 9 8 41 41 H 1.09002 * 109.47321 * 299.99980 * 11 10 9 42 42 H 1.09004 * 109.47165 * 60.00304 * 11 10 9 43 43 H 0.97005 * 120.00023 * 179.97438 * 15 14 12 44 44 H 1.07998 * 126.58562 * 0.02841 * 21 20 6 45 45 H 1.08002 * 125.79423 * 179.89440 * 22 21 20 46 46 H 1.07999 * 125.79059 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1448 -2.9165 2.4375 7 1 3.2201 -2.7646 2.5316 8 7 1.4683 -2.3768 3.6244 9 6 2.2858 -2.5695 4.8296 10 6 1.5502 -1.9956 6.0421 11 6 2.4014 -2.1969 7.2974 12 6 1.6765 -1.6320 8.4918 13 1 0.7059 -1.1748 8.3679 14 6 2.2523 -1.6990 9.7428 15 7 1.6200 -1.2057 10.7850 16 14 3.9314 -2.4892 9.9570 17 1 4.9878 -1.4575 9.7987 18 1 4.0261 -3.0909 11.3113 19 1 4.1151 -3.5472 8.9313 20 6 1.8542 -4.3906 2.3204 21 6 2.7670 -5.4018 1.9422 22 6 2.0916 -6.5649 1.9653 23 8 0.8275 -6.3142 2.3435 24 6 0.6778 -4.9972 2.5602 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 2.0700 -2.6549 0.3002 35 1 0.5490 -2.2723 1.1420 36 1 1.2361 -1.4032 3.4969 37 1 2.4629 -3.6342 4.9821 38 1 3.2397 -2.0564 4.7074 39 1 1.3735 -0.9309 5.8894 40 1 0.5961 -2.5084 6.1645 41 1 2.5777 -3.2617 7.4499 42 1 3.3557 -1.6843 7.1753 43 1 2.0250 -1.2531 11.6652 44 1 3.8064 -5.2663 1.6821 45 1 2.4981 -7.5363 1.7252 46 1 -0.2325 -4.5082 2.8741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286075616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:45 Heat of formation + Delta-G solvation = -39.883371 kcal Electronic energy + Delta-G solvation = -21735.175545 eV Core-core repulsion = 18624.349347 eV Total energy + Delta-G solvation = -3110.826198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.36121 -39.17277 -37.16871 -35.80897 -34.33395 -33.05620 -31.51352 -30.20082 -28.30756 -27.96673 -26.31505 -23.86398 -23.14487 -22.36397 -21.81189 -20.77342 -20.50758 -18.90842 -18.27600 -16.96617 -16.64942 -16.58015 -16.23836 -15.75202 -15.66028 -15.29346 -14.83820 -14.76921 -14.65817 -14.11476 -13.72289 -13.60883 -13.57925 -13.37665 -13.15782 -13.01054 -12.76324 -12.54563 -12.41571 -12.38661 -12.06419 -11.81869 -11.54659 -11.52601 -11.45797 -11.42374 -11.30719 -11.22396 -10.76887 -10.44935 -9.39875 -9.30559 -8.29910 -6.33880 0.99319 1.34242 1.36712 1.48934 1.76598 2.35623 2.40775 3.05302 3.19384 3.77554 3.94100 3.98571 4.11939 4.17963 4.22202 4.25721 4.40662 4.43922 4.47423 4.57913 4.67071 4.71708 4.82525 4.84022 4.87448 4.91698 4.96797 5.01834 5.03282 5.09050 5.13591 5.16317 5.24032 5.27418 5.38545 5.40239 5.51078 5.54267 5.56762 5.61060 5.66128 5.68291 6.09517 6.28869 6.36118 6.54381 6.74203 7.30712 8.87094 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004119 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.503802 B = 6795.665652 C = 8473.218215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.117 4.117 5 C -0.104 4.104 6 C 0.159 3.841 7 H 0.045 0.955 8 N -0.685 5.685 9 C 0.076 3.924 10 C -0.089 4.089 11 C -0.010 4.010 12 C -0.532 4.532 13 H 0.031 0.969 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.952 3.048 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.249 1.249 20 C -0.181 4.181 21 C -0.227 4.227 22 C -0.048 4.048 23 O -0.196 6.196 24 C -0.029 4.029 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.348 0.652 37 H 0.057 0.943 38 H 0.029 0.971 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.266 0.734 44 H 0.157 0.843 45 H 0.232 0.768 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -4.309 -26.822 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.155 4.155 5 C -0.142 4.142 6 C 0.049 3.951 7 H 0.063 0.937 8 N -0.319 5.319 9 C -0.053 4.053 10 C -0.127 4.127 11 C -0.048 4.048 12 C -0.571 4.571 13 H 0.049 0.951 14 C -0.194 4.194 15 N -0.593 5.593 16 Si 0.775 3.225 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.173 1.173 20 C -0.183 4.183 21 C -0.246 4.246 22 C -0.115 4.115 23 O -0.093 6.093 24 C -0.097 4.097 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.169 0.831 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.174 0.826 45 H 0.248 0.752 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.415 -5.040 -26.516 27.098 hybrid contribution 1.237 0.704 0.760 1.613 sum 3.652 -4.336 -25.756 26.373 Atomic orbital electron populations 1.21896 0.95098 1.01943 1.01736 1.21060 0.96032 0.96095 0.97800 1.21856 1.00962 0.95946 1.01865 1.21706 1.00701 0.94726 0.98336 1.21702 1.01971 0.94536 0.96004 1.19792 0.96024 0.88921 0.90347 0.93689 1.60409 1.45554 1.24108 1.01779 1.21822 0.94016 0.99967 0.89490 1.21248 0.98606 0.99677 0.93131 1.19481 0.95775 0.96067 0.93447 1.21508 1.04582 1.38050 0.92911 0.95075 1.26037 1.02227 0.95626 0.95462 1.70070 1.40921 1.48163 1.00121 0.85636 0.79248 0.79786 0.77845 1.18945 1.20853 1.17285 1.20512 0.94068 0.96605 1.07138 1.21977 1.01590 0.92517 1.08533 1.24626 0.81516 1.01498 1.03828 1.84072 1.31343 1.26791 1.67046 1.24057 1.01402 0.79803 1.04404 0.92361 0.92400 0.93096 0.90909 0.92698 0.92132 0.93122 0.92311 0.92156 0.90824 0.90781 0.83128 0.92469 0.95250 0.93210 0.93288 0.96635 0.96415 0.92484 0.82557 0.75182 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.95 71.98 0.64 -1.52 16 2 C -0.09 -1.32 2.92 -10.79 -0.03 -1.35 16 3 C -0.15 -2.10 9.19 71.98 0.66 -1.44 16 4 C -0.12 -1.93 4.51 30.59 0.14 -1.79 16 5 C -0.10 -1.84 4.54 30.59 0.14 -1.70 16 6 C 0.16 3.55 2.51 44.17 0.11 3.66 16 7 H 0.05 1.06 7.80 -2.38 -0.02 1.04 16 8 N -0.68 -17.87 6.05 -495.43 -3.00 -20.86 16 9 C 0.08 2.44 5.48 86.30 0.47 2.91 16 10 C -0.09 -3.54 5.41 30.59 0.17 -3.37 16 11 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 12 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 13 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 14 C 0.00 0.18 5.47 84.66 0.46 0.64 16 15 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 16 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 20 C -0.18 -4.33 4.92 -19.94 -0.10 -4.43 16 21 C -0.23 -4.81 10.87 22.19 0.24 -4.57 16 22 C -0.05 -0.93 12.09 66.97 0.81 -0.12 16 23 O -0.20 -4.78 10.65 -2.58 -0.03 -4.81 16 24 C -0.03 -0.72 11.70 66.97 0.78 0.07 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.84 6.57 -2.39 -0.02 0.82 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.07 6.43 -2.38 -0.02 1.05 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.34 6.57 -2.39 -0.02 1.32 16 36 H 0.35 8.45 6.47 -89.69 -0.58 7.87 16 37 H 0.06 1.95 8.00 -2.39 -0.02 1.93 16 38 H 0.03 0.91 8.06 -2.38 -0.02 0.89 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 42 H 0.02 0.82 7.57 -2.38 -0.02 0.80 16 43 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 44 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.23 2.49 8.06 -2.91 -0.02 2.47 16 46 H 0.21 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -68.19 367.69 4.31 -63.87 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.29 Total: 20.09 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 4.87 Total: -44.77 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -2.70 Total: -81.52 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.03 Total: -4.81 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -68.19 4.31 -63.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286075616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.988 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds