Wall clock time and date at job start Tue Mar 31 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99731 * 2 1 4 4 N 1.46505 * 109.46821 * 125.00132 * 3 2 1 5 5 C 1.46494 * 120.00205 * 90.00081 * 4 3 2 6 6 C 1.53002 * 109.47345 * 89.99740 * 5 4 3 7 7 C 1.52997 * 109.46817 * 65.00126 * 6 5 4 8 8 C 1.52999 * 109.47317 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47159 * 300.00546 * 8 7 6 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 7 11 11 C 1.53000 * 109.47233 * 184.99932 * 6 5 4 12 12 C 1.34779 * 120.00118 * 269.99976 * 4 3 2 13 13 O 1.21278 * 120.00332 * 180.02562 * 12 4 3 14 14 C 1.50700 * 119.99621 * 359.97438 * 12 4 3 15 15 C 1.53004 * 109.47106 * 179.97438 * 14 12 4 16 16 C 1.50696 * 109.47397 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00453 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46900 * 89.99764 * 20 18 16 22 22 H 1.48490 * 109.47449 * 210.00170 * 20 18 16 23 23 H 1.48502 * 109.46926 * 330.00470 * 20 18 16 24 24 H 1.08003 * 119.99797 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00345 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99821 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47363 * 5.00176 * 3 2 1 28 28 H 1.08998 * 109.47572 * 244.99992 * 3 2 1 29 29 H 1.09008 * 109.47020 * 329.99971 * 5 4 3 30 30 H 1.08997 * 109.47417 * 209.99966 * 5 4 3 31 31 H 1.09002 * 109.47070 * 305.00306 * 6 5 4 32 32 H 1.08996 * 109.47853 * 300.00202 * 7 6 5 33 33 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 34 34 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 36 36 H 1.09002 * 109.46935 * 299.99411 * 9 8 7 37 37 H 1.09001 * 109.46812 * 179.97438 * 9 8 7 38 38 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.46695 * 59.99734 * 10 9 8 40 40 H 1.08992 * 109.47399 * 300.00166 * 11 6 5 41 41 H 1.09004 * 109.46724 * 60.00652 * 11 6 5 42 42 H 1.09001 * 109.47863 * 299.99789 * 14 12 4 43 43 H 1.09005 * 109.47389 * 60.00522 * 14 12 4 44 44 H 1.08999 * 109.47117 * 300.00420 * 15 14 12 45 45 H 1.08996 * 109.46968 * 59.99651 * 15 14 12 46 46 H 0.96996 * 120.00386 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2753 1.9652 0.5192 7 6 5.3624 3.0173 1.6266 8 6 6.2793 4.1565 1.1767 9 6 7.6762 3.6031 0.8878 10 6 7.5891 2.5510 -0.2196 11 6 6.6722 1.4122 0.2300 12 6 2.5936 1.8222 2.3214 13 8 3.3638 1.8448 3.2580 14 6 1.1895 2.3434 2.4879 15 6 0.9955 2.8372 3.9230 16 6 -0.4088 3.3578 4.0897 17 1 -1.0943 3.3389 3.2554 18 6 -0.8181 3.8593 5.3070 19 7 0.0171 3.8838 6.3226 20 14 -2.5587 4.5054 5.5135 21 1 -3.4486 3.3996 5.9501 22 1 -2.5690 5.5822 6.5360 23 1 -3.0421 5.0479 4.2184 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 4.3666 0.0351 0.2190 30 1 4.7140 0.4278 1.9200 31 1 4.8708 2.4213 -0.3843 32 1 4.3673 3.4113 1.8328 33 1 5.7670 2.5612 2.5302 34 1 6.3418 4.9059 1.9658 35 1 5.8752 4.6128 0.2730 36 1 8.0803 3.1469 1.7915 37 1 8.3293 4.4147 0.5668 38 1 8.5842 2.1571 -0.4257 39 1 7.1849 3.0073 -1.1232 40 1 7.0767 0.9561 1.1335 41 1 6.6101 0.6627 -0.5589 42 1 1.0231 3.1676 1.7942 43 1 0.4781 1.5441 2.2798 44 1 1.1617 2.0128 4.6165 45 1 1.7068 3.6362 4.1316 46 1 -0.2710 4.2362 7.1791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291716159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:09 Heat of formation + Delta-G solvation = -53.338594 kcal Electronic energy + Delta-G solvation = -22633.095989 eV Core-core repulsion = 19521.686328 eV Total energy + Delta-G solvation = -3111.409661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.91772 -38.10984 -35.94727 -33.71217 -33.13329 -31.44744 -30.76432 -30.48455 -26.67953 -26.17218 -24.66068 -22.50941 -21.87306 -20.76303 -20.16361 -19.58293 -18.34451 -16.96030 -15.97059 -15.75513 -15.63416 -14.93569 -14.42786 -14.38293 -14.19973 -14.19328 -13.78030 -13.40101 -13.05092 -12.69497 -12.48059 -12.20573 -12.11790 -11.80810 -11.71491 -11.56508 -11.30939 -11.08501 -11.03919 -10.91231 -10.88629 -10.56643 -10.43402 -10.16134 -9.95868 -9.91180 -9.57516 -9.46675 -9.09586 -8.89780 -8.34433 -8.27522 -5.93471 -3.97578 2.22020 3.29746 3.34543 3.40277 3.42586 3.48821 4.49075 4.65949 4.73814 4.77522 4.92274 5.04526 5.09566 5.26181 5.32387 5.38434 5.41129 5.41484 5.50058 5.52985 5.57692 5.63436 5.68928 5.77142 5.86422 5.92328 5.96719 6.03166 6.18693 6.19481 6.22029 6.26796 6.30977 6.37213 6.52460 6.60340 6.68052 6.71402 6.85100 6.97255 7.77239 7.81987 7.90564 8.10514 8.42245 8.83142 9.11068 9.65746 11.17483 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.004432 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.550346 B = 6316.187261 C = 7516.732550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C 0.139 3.861 4 N -0.621 5.621 5 C 0.119 3.881 6 C -0.099 4.099 7 C -0.107 4.107 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.513 3.487 13 O -0.527 6.527 14 C -0.130 4.130 15 C 0.039 3.961 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.761 -5.599 -17.174 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C 0.016 3.984 4 N -0.355 5.355 5 C -0.004 4.004 6 C -0.119 4.119 7 C -0.144 4.144 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.153 4.153 11 C -0.150 4.150 12 C 0.303 3.697 13 O -0.402 6.402 14 C -0.169 4.169 15 C 0.001 3.999 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.115 0.885 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.041 0.959 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.202 -5.515 -16.447 20.650 hybrid contribution -1.038 0.256 0.087 1.073 sum 10.164 -5.258 -16.360 19.965 Atomic orbital electron populations 1.23928 0.95837 1.02285 0.99020 1.23301 0.96306 0.98908 1.01252 1.20614 0.92491 0.95789 0.89497 1.48135 1.11820 1.64093 1.11448 1.21440 0.81816 0.95164 1.01987 1.21551 0.94736 0.96638 0.98987 1.21545 1.00071 0.95157 0.97644 1.21558 0.95132 0.98194 1.00882 1.21541 0.97264 0.98106 0.98765 1.21484 0.99083 0.96395 0.98385 1.21509 0.94890 0.97501 1.01083 1.21488 0.91002 0.76178 0.80987 1.90661 1.55779 1.54587 1.39192 1.21906 0.90666 1.00538 1.03822 1.18883 0.96403 0.96861 0.87751 1.21215 0.97547 1.41110 0.96485 0.92717 1.25010 0.97250 0.95986 0.96057 1.69995 1.34887 1.46124 1.01836 0.86621 0.85017 0.78635 0.77856 1.20696 1.21240 1.19898 0.88466 0.87982 0.87591 0.89520 0.90229 0.91412 0.90121 0.91537 0.91577 0.91504 0.92150 0.92554 0.92068 0.92544 0.92376 0.92279 0.91836 0.92282 0.90649 0.90306 0.95963 0.95933 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 13.86 29.01 0.40 -1.50 16 2 C -0.18 -2.00 9.74 -36.03 -0.35 -2.35 16 3 C 0.14 1.61 5.65 -5.19 -0.03 1.59 16 4 N -0.62 -9.07 2.34 -175.06 -0.41 -9.48 16 5 C 0.12 1.52 5.00 -4.04 -0.02 1.49 16 6 C -0.10 -1.17 2.40 -90.62 -0.22 -1.39 16 7 C -0.11 -1.54 3.95 -26.73 -0.11 -1.65 16 8 C -0.12 -1.48 5.92 -26.73 -0.16 -1.63 16 9 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 10 C -0.12 -1.07 5.92 -26.76 -0.16 -1.23 16 11 C -0.11 -1.09 5.20 -26.76 -0.14 -1.23 16 12 C 0.51 9.98 6.26 -10.98 -0.07 9.92 16 13 O -0.53 -12.18 13.77 5.56 0.08 -12.10 16 14 C -0.13 -2.69 4.19 -27.88 -0.12 -2.81 16 15 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 16 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.10 0.96 8.06 -52.48 -0.42 0.54 16 25 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 26 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.09 1.03 6.09 -51.93 -0.32 0.71 16 28 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.07 0.69 8.07 -51.92 -0.42 0.27 16 30 H 0.08 1.20 7.42 -51.93 -0.39 0.81 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.16 6.06 -51.93 -0.31 0.84 16 33 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.45 7.40 -51.93 -0.38 1.06 16 43 H 0.08 1.55 7.54 -51.93 -0.39 1.16 16 44 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 45 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -32.56 361.24 -9.32 -41.88 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.49 Total: -0.68 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.65 Total: -14.95 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.33 Total: -36.35 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -9.32 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291716159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds