Wall clock time and date at job start Tue Mar 31 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99731 * 2 1 4 4 N 1.46505 * 109.46821 * 125.00132 * 3 2 1 5 5 C 1.46494 * 120.00205 * 90.00081 * 4 3 2 6 6 C 1.53002 * 109.47345 * 89.99740 * 5 4 3 7 7 C 1.52997 * 109.46817 * 65.00126 * 6 5 4 8 8 C 1.52999 * 109.47317 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47159 * 300.00546 * 8 7 6 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 7 11 11 C 1.53000 * 109.47233 * 184.99932 * 6 5 4 12 12 C 1.34779 * 120.00118 * 269.99976 * 4 3 2 13 13 O 1.21278 * 120.00332 * 180.02562 * 12 4 3 14 14 C 1.50700 * 119.99621 * 359.97438 * 12 4 3 15 15 C 1.53004 * 109.47106 * 179.97438 * 14 12 4 16 16 C 1.50696 * 109.47397 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00453 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46900 * 89.99764 * 20 18 16 22 22 H 1.48490 * 109.47449 * 210.00170 * 20 18 16 23 23 H 1.48502 * 109.46926 * 330.00470 * 20 18 16 24 24 H 1.08003 * 119.99797 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00345 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99821 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47363 * 5.00176 * 3 2 1 28 28 H 1.08998 * 109.47572 * 244.99992 * 3 2 1 29 29 H 1.09008 * 109.47020 * 329.99971 * 5 4 3 30 30 H 1.08997 * 109.47417 * 209.99966 * 5 4 3 31 31 H 1.09002 * 109.47070 * 305.00306 * 6 5 4 32 32 H 1.08996 * 109.47853 * 300.00202 * 7 6 5 33 33 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 34 34 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 36 36 H 1.09002 * 109.46935 * 299.99411 * 9 8 7 37 37 H 1.09001 * 109.46812 * 179.97438 * 9 8 7 38 38 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.46695 * 59.99734 * 10 9 8 40 40 H 1.08992 * 109.47399 * 300.00166 * 11 6 5 41 41 H 1.09004 * 109.46724 * 60.00652 * 11 6 5 42 42 H 1.09001 * 109.47863 * 299.99789 * 14 12 4 43 43 H 1.09005 * 109.47389 * 60.00522 * 14 12 4 44 44 H 1.08999 * 109.47117 * 300.00420 * 15 14 12 45 45 H 1.08996 * 109.46968 * 59.99651 * 15 14 12 46 46 H 0.96996 * 120.00386 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2753 1.9652 0.5192 7 6 5.3624 3.0173 1.6266 8 6 6.2793 4.1565 1.1767 9 6 7.6762 3.6031 0.8878 10 6 7.5891 2.5510 -0.2196 11 6 6.6722 1.4122 0.2300 12 6 2.5936 1.8222 2.3214 13 8 3.3638 1.8448 3.2580 14 6 1.1895 2.3434 2.4879 15 6 0.9955 2.8372 3.9230 16 6 -0.4088 3.3578 4.0897 17 1 -1.0943 3.3389 3.2554 18 6 -0.8181 3.8593 5.3070 19 7 0.0171 3.8838 6.3226 20 14 -2.5587 4.5054 5.5135 21 1 -3.4486 3.3996 5.9501 22 1 -2.5690 5.5822 6.5360 23 1 -3.0421 5.0479 4.2184 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 4.3666 0.0351 0.2190 30 1 4.7140 0.4278 1.9200 31 1 4.8708 2.4213 -0.3843 32 1 4.3673 3.4113 1.8328 33 1 5.7670 2.5612 2.5302 34 1 6.3418 4.9059 1.9658 35 1 5.8752 4.6128 0.2730 36 1 8.0803 3.1469 1.7915 37 1 8.3293 4.4147 0.5668 38 1 8.5842 2.1571 -0.4257 39 1 7.1849 3.0073 -1.1232 40 1 7.0767 0.9561 1.1335 41 1 6.6101 0.6627 -0.5589 42 1 1.0231 3.1676 1.7942 43 1 0.4781 1.5441 2.2798 44 1 1.1617 2.0128 4.6165 45 1 1.7068 3.6362 4.1316 46 1 -0.2710 4.2362 7.1791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291716159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:09 Heat of formation + Delta-G solvation = -71.087720 kcal Electronic energy + Delta-G solvation = -22633.865649 eV Core-core repulsion = 19521.686328 eV Total energy + Delta-G solvation = -3112.179320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24310 -39.20357 -37.18778 -35.63383 -34.35237 -33.06037 -32.06845 -31.54796 -28.24813 -27.35802 -26.18966 -23.63855 -23.32408 -22.04105 -21.16431 -20.55591 -19.65338 -18.80519 -17.60685 -17.08533 -16.91969 -16.42931 -16.00518 -15.54633 -15.20032 -15.11673 -14.85385 -14.67292 -14.47554 -14.15461 -14.04718 -13.52007 -13.27698 -13.15239 -12.96981 -12.77979 -12.67833 -12.56704 -12.42088 -12.19988 -11.99775 -11.92991 -11.82760 -11.56641 -11.38856 -11.29794 -11.12914 -10.88989 -10.63667 -10.57586 -10.25054 -9.54983 -8.18277 -6.32615 1.31932 1.40987 1.43964 1.54832 1.76318 2.26063 2.43785 3.14549 3.70755 3.79741 3.86878 3.93283 4.04211 4.19379 4.23586 4.35661 4.44497 4.46893 4.48116 4.51375 4.54936 4.61132 4.65301 4.74664 4.76582 4.80840 4.90685 5.03472 5.05333 5.14110 5.18030 5.27296 5.28664 5.33240 5.41998 5.46289 5.47566 5.60544 5.62011 5.71566 5.77648 5.84502 5.85544 6.17391 6.46479 6.85581 7.34586 7.38281 8.94464 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.004432 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.550346 B = 6316.187261 C = 7516.732550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.184 4.184 3 C 0.132 3.868 4 N -0.606 5.606 5 C 0.116 3.884 6 C -0.091 4.091 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.112 4.112 11 C -0.108 4.108 12 C 0.511 3.489 13 O -0.578 6.578 14 C -0.116 4.116 15 C 0.047 3.953 16 C -0.542 4.542 17 H 0.074 0.926 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.254 1.254 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.095 0.905 44 H -0.021 1.021 45 H -0.021 1.021 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -6.134 -20.699 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.338 5.338 5 C -0.006 4.006 6 C -0.110 4.110 7 C -0.141 4.141 8 C -0.156 4.156 9 C -0.155 4.155 10 C -0.150 4.150 11 C -0.146 4.146 12 C 0.301 3.699 13 O -0.457 6.457 14 C -0.156 4.156 15 C 0.010 3.990 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.796 3.204 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.178 1.178 24 H 0.126 0.874 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.113 0.887 44 H -0.003 1.003 45 H -0.002 1.002 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.487 -6.072 -20.047 23.425 hybrid contribution -0.789 0.407 1.183 1.479 sum 9.698 -5.665 -18.864 21.954 Atomic orbital electron populations 1.24096 0.95988 1.02879 0.98425 1.23320 0.96411 0.98879 1.01706 1.20918 0.92447 0.96192 0.89351 1.48050 1.13180 1.62022 1.10540 1.21642 0.80611 0.96490 1.01834 1.21501 0.96195 0.95322 0.98020 1.21443 0.98132 0.96706 0.97803 1.21544 0.96262 0.97104 1.00709 1.21537 0.95741 0.99087 0.99158 1.21485 0.99990 0.95575 0.97920 1.21501 0.93232 0.98299 1.01556 1.21194 0.90082 0.76500 0.82116 1.90648 1.56708 1.56955 1.41410 1.21634 0.92460 1.01655 0.99817 1.18640 0.95345 0.93991 0.91054 1.21686 0.98135 1.40862 0.97302 0.90755 1.26128 1.02488 0.96087 0.95587 1.70181 1.37717 1.47286 1.02592 0.85336 0.78528 0.77979 0.78512 1.19647 1.21139 1.17816 0.87367 0.88070 0.86659 0.89738 0.86749 0.87449 0.92908 0.89945 0.95401 0.94699 0.93748 0.91412 0.93099 0.91025 0.90571 0.91139 0.92932 0.89579 0.88671 0.88667 1.00303 1.00213 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 13.86 67.78 0.94 -2.50 16 2 C -0.18 -3.61 9.74 25.65 0.25 -3.36 16 3 C 0.13 2.71 5.65 85.63 0.48 3.19 16 4 N -0.61 -17.21 2.34 -826.16 -1.94 -19.15 16 5 C 0.12 2.82 5.00 86.38 0.43 3.25 16 6 C -0.09 -2.01 2.40 -10.79 -0.03 -2.03 16 7 C -0.10 -3.13 3.95 30.59 0.12 -3.01 16 8 C -0.12 -2.95 5.92 30.60 0.18 -2.77 16 9 C -0.12 -2.30 5.92 30.60 0.18 -2.12 16 10 C -0.11 -1.73 5.92 30.58 0.18 -1.55 16 11 C -0.11 -1.83 5.20 30.58 0.16 -1.67 16 12 C 0.51 20.66 6.26 87.66 0.55 21.20 16 13 O -0.58 -28.85 13.77 -3.02 -0.04 -28.89 16 14 C -0.12 -4.93 4.19 29.85 0.13 -4.81 16 15 C 0.05 2.73 4.26 29.85 0.13 2.85 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 17 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 19 N -0.94 -60.53 13.29 21.45 0.28 -60.25 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 24 H 0.11 1.86 8.06 -2.91 -0.02 1.84 16 25 H 0.10 1.99 7.84 -2.91 -0.02 1.96 16 26 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16 27 H 0.08 1.80 6.09 -2.39 -0.01 1.78 16 28 H 0.11 1.61 8.07 -2.39 -0.02 1.59 16 29 H 0.11 1.80 8.07 -2.38 -0.02 1.78 16 30 H 0.05 1.61 7.42 -2.39 -0.02 1.59 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.04 6.06 -2.39 -0.01 1.02 16 33 H 0.03 1.25 8.00 -2.39 -0.02 1.23 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 3.63 7.40 -2.39 -0.02 3.61 16 43 H 0.10 3.70 7.54 -2.38 -0.02 3.68 16 44 H -0.02 -1.40 8.10 -2.39 -0.02 -1.42 16 45 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 46 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -76.51 361.24 5.64 -70.88 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.90 Total: 15.00 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 4.40 Total: -24.48 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.65 Total: -79.39 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.04 Total: -28.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.51 5.64 -70.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291716159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.209 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds