Wall clock time and date at job start Tue Mar 31 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99937 * 2 1 4 4 N 1.46507 * 109.47015 * 124.99824 * 3 2 1 5 5 C 1.46500 * 119.99813 * 94.13052 * 4 3 2 6 6 C 1.50706 * 109.46986 * 264.08884 * 5 4 3 7 7 H 1.08002 * 119.99751 * 359.72568 * 6 5 4 8 8 C 1.37873 * 119.99889 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00141 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99825 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46963 * 119.99968 * 10 8 6 13 13 H 1.48491 * 109.47259 * 240.00229 * 10 8 6 14 14 C 1.34772 * 120.00060 * 274.12892 * 4 3 2 15 15 O 1.21280 * 119.99958 * 3.92425 * 14 4 3 16 16 C 1.50697 * 120.00013 * 183.93011 * 14 4 3 17 17 H 1.09002 * 109.47201 * 26.49430 * 16 14 4 18 18 C 1.53002 * 109.47493 * 146.50305 * 16 14 4 19 19 C 1.52991 * 109.46946 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.47512 * 299.99351 * 19 18 16 21 21 H 1.08997 * 109.47216 * 300.00629 * 20 19 18 22 22 C 1.53000 * 109.47217 * 180.02562 * 20 19 18 23 23 C 1.53009 * 109.46747 * 175.00513 * 22 20 19 24 24 C 1.53002 * 109.46485 * 60.00367 * 20 19 18 25 25 C 1.53000 * 109.47326 * 299.99851 * 24 20 19 26 26 H 1.07998 * 120.00057 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99875 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00201 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47159 * 5.00255 * 3 2 1 30 30 H 1.09001 * 109.46973 * 244.99848 * 3 2 1 31 31 H 1.08991 * 109.47306 * 144.08994 * 5 4 3 32 32 H 1.09001 * 109.47372 * 24.08593 * 5 4 3 33 33 H 0.97004 * 120.00056 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.46477 * 299.99659 * 18 16 14 35 35 H 1.08997 * 109.47179 * 59.99533 * 18 16 14 36 36 H 1.09003 * 109.47807 * 59.99975 * 19 18 16 37 37 H 1.09003 * 109.46913 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.47259 * 294.99942 * 22 20 19 39 39 H 1.08994 * 109.47233 * 55.00476 * 22 20 19 40 40 H 1.08994 * 109.47284 * 59.99994 * 23 22 20 41 41 H 1.08996 * 109.47046 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.46775 * 299.99725 * 23 22 20 43 43 H 1.08997 * 109.47179 * 60.00239 * 24 20 19 44 44 H 1.09001 * 109.46917 * 179.97438 * 24 20 19 45 45 H 1.08997 * 109.47308 * 300.00309 * 25 24 20 46 46 H 1.09003 * 109.47293 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3846 0.9104 0.9465 6 6 4.5296 -0.5342 1.3507 7 1 3.6726 -1.0820 1.7137 8 6 5.7575 -1.1549 1.2619 9 7 6.8023 -0.4863 0.8249 10 14 5.9375 -2.9452 1.7636 11 1 4.6231 -3.4667 2.2172 12 1 6.4104 -3.7398 0.6016 13 1 6.9217 -3.0527 2.8702 14 6 2.5701 1.7444 2.3426 15 8 1.4028 2.0255 2.5133 16 6 3.5469 1.8565 3.4846 17 1 4.5479 2.0324 3.0907 18 6 3.1425 3.0223 4.3892 19 6 4.1339 3.1355 5.5490 20 6 4.1244 1.8363 6.3569 21 1 3.1233 1.6605 6.7505 22 6 5.1154 1.9498 7.5170 23 6 5.0160 0.7017 8.3965 24 6 4.5288 0.6704 5.4523 25 6 3.5374 0.5571 4.2925 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 5.0366 1.5277 1.5642 32 1 4.6624 1.0241 -0.1014 33 1 7.6663 -0.9229 0.7628 34 1 3.1489 3.9478 3.8136 35 1 2.1416 2.8463 4.7831 36 1 5.1351 3.3114 5.1554 37 1 3.8460 3.9664 6.1932 38 1 6.1278 2.0368 7.1229 39 1 4.8796 2.8327 8.1112 40 1 5.2518 -0.1811 7.8024 41 1 5.7217 0.7827 9.2233 42 1 4.0036 0.6147 8.7907 43 1 5.5299 0.8462 5.0587 44 1 4.5224 -0.2552 6.0279 45 1 2.5363 0.3813 4.6861 46 1 3.8252 -0.2738 3.6483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292209510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:01 Heat of formation + Delta-G solvation = -53.817239 kcal Electronic energy + Delta-G solvation = -23285.647287 eV Core-core repulsion = 20174.216871 eV Total energy + Delta-G solvation = -3111.430416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.68736 -37.81961 -35.35344 -33.84005 -33.08522 -32.09226 -30.37460 -29.01399 -27.43248 -25.76410 -23.73515 -22.88716 -22.17759 -20.80417 -19.61995 -19.32550 -18.06376 -16.55438 -16.32970 -15.65277 -14.94675 -14.56080 -14.43016 -14.23404 -13.83201 -13.59090 -13.38399 -13.07079 -12.95656 -12.56319 -12.30670 -12.26579 -11.82572 -11.64345 -11.46872 -11.36977 -11.26418 -10.93988 -10.92500 -10.76848 -10.73370 -10.63912 -10.42019 -10.23593 -9.98033 -9.80026 -9.70712 -9.43080 -9.10183 -8.67778 -8.49941 -7.70008 -6.19057 -4.24320 2.74797 3.19735 3.29198 3.32475 3.51270 4.09619 4.33184 4.89956 4.99838 5.07089 5.14314 5.33359 5.41820 5.47666 5.53308 5.64778 5.66363 5.78125 5.81295 5.83391 5.94179 5.96283 6.01127 6.02516 6.08741 6.16651 6.18767 6.24757 6.30412 6.39186 6.44590 6.55024 6.58979 6.61576 6.69952 6.75569 6.93443 7.03669 7.13472 7.22366 7.28629 7.57851 7.77030 8.06760 8.37911 8.80892 9.10678 9.42241 10.87751 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.007379 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.048029 B = 3793.682203 C = 5381.471958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C 0.147 3.853 4 N -0.596 5.596 5 C 0.236 3.764 6 C -0.528 4.528 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.523 3.477 15 O -0.574 6.574 16 C -0.096 4.096 17 H 0.096 0.904 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.089 4.089 21 H 0.066 0.934 22 C -0.119 4.119 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.109 4.109 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 4.106 7.201 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.166 4.166 3 C 0.024 3.976 4 N -0.325 5.325 5 C 0.116 3.884 6 C -0.566 4.566 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.528 5.528 10 Si 0.716 3.284 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.311 3.689 15 O -0.455 6.455 16 C -0.117 4.117 17 H 0.115 0.885 18 C -0.139 4.139 19 C -0.148 4.148 20 C -0.107 4.107 21 H 0.085 0.915 22 C -0.156 4.156 23 C -0.211 4.211 24 C -0.147 4.147 25 C -0.147 4.147 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.683 4.244 7.222 9.151 hybrid contribution 0.354 -1.211 0.122 1.268 sum -3.329 3.033 7.344 8.615 Atomic orbital electron populations 1.23663 0.95941 1.00955 1.02963 1.23432 0.95866 0.99744 0.97577 1.20390 0.92384 0.94990 0.89859 1.48277 1.13109 1.63094 1.08055 1.19501 0.75449 0.95381 0.98070 1.21485 0.95000 0.96144 1.44007 0.91916 1.24896 0.95690 0.98024 0.95001 1.69923 1.00299 1.36617 1.46012 0.86576 0.78359 0.85039 0.78400 1.19625 1.20943 1.20772 1.20560 0.88583 0.75896 0.83823 1.90564 1.18848 1.52553 1.83502 1.21207 0.99770 0.96921 0.93812 0.88548 1.21384 0.99429 0.97156 0.95935 1.21561 0.99736 0.96810 0.96690 1.21225 0.98918 0.95628 0.94924 0.91547 1.21567 0.99771 0.97731 0.96561 1.21822 1.01198 0.98706 0.99370 1.21579 0.99767 0.97341 0.95975 1.21520 0.98822 0.97546 0.96762 0.89246 0.89063 0.86824 0.91214 0.90270 0.94293 0.94681 0.92643 0.92540 0.91379 0.91960 0.92446 0.92027 0.92527 0.92253 0.93315 0.93032 0.91567 0.92142 0.92891 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 14.32 29.01 0.42 -2.83 16 2 C -0.15 -2.71 9.82 -36.02 -0.35 -3.06 16 3 C 0.15 2.76 5.82 -5.19 -0.03 2.73 16 4 N -0.60 -12.52 2.47 -176.43 -0.43 -12.96 16 5 C 0.24 5.43 5.00 -5.19 -0.03 5.40 16 6 C -0.53 -13.07 7.54 -34.44 -0.26 -13.33 16 7 H 0.06 1.60 7.33 -52.49 -0.38 1.22 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 10 Si 0.89 20.12 29.54 -169.99 -5.02 15.09 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.52 11.04 6.60 -10.99 -0.07 10.97 16 15 O -0.57 -13.18 15.93 5.56 0.09 -13.09 16 16 C -0.10 -1.79 1.96 -91.77 -0.18 -1.97 16 17 H 0.10 1.89 5.85 -51.93 -0.30 1.59 16 18 C -0.10 -1.63 4.84 -26.73 -0.13 -1.76 16 19 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 20 C -0.09 -1.18 2.19 -90.62 -0.20 -1.38 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.12 -1.37 5.40 -26.73 -0.14 -1.51 16 23 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 24 C -0.11 -1.69 4.96 -26.73 -0.13 -1.83 16 25 C -0.11 -1.99 5.18 -26.73 -0.14 -2.12 16 26 H 0.09 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 28 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 29 H 0.07 1.28 7.26 -51.93 -0.38 0.91 16 30 H 0.08 1.37 7.80 -51.93 -0.40 0.97 16 31 H 0.04 0.93 5.93 -51.93 -0.31 0.62 16 32 H 0.04 0.85 7.79 -51.93 -0.40 0.44 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.89 6.56 -51.93 -0.34 0.54 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.99 5.66 -51.93 -0.29 1.69 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -27.12 358.78 -8.54 -35.66 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.19 Total: 4.94 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.13 Total: -12.01 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.30 Total: -36.01 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.12 -8.54 -35.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292209510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.155 kcal (2) G-P(sol) polarization free energy of solvation -27.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds