Wall clock time and date at job start Tue Mar 31 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99937 * 2 1 4 4 N 1.46507 * 109.47015 * 124.99824 * 3 2 1 5 5 C 1.46500 * 119.99813 * 94.13052 * 4 3 2 6 6 C 1.50706 * 109.46986 * 264.08884 * 5 4 3 7 7 H 1.08002 * 119.99751 * 359.72568 * 6 5 4 8 8 C 1.37873 * 119.99889 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00141 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99825 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46963 * 119.99968 * 10 8 6 13 13 H 1.48491 * 109.47259 * 240.00229 * 10 8 6 14 14 C 1.34772 * 120.00060 * 274.12892 * 4 3 2 15 15 O 1.21280 * 119.99958 * 3.92425 * 14 4 3 16 16 C 1.50697 * 120.00013 * 183.93011 * 14 4 3 17 17 H 1.09002 * 109.47201 * 26.49430 * 16 14 4 18 18 C 1.53002 * 109.47493 * 146.50305 * 16 14 4 19 19 C 1.52991 * 109.46946 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.47512 * 299.99351 * 19 18 16 21 21 H 1.08997 * 109.47216 * 300.00629 * 20 19 18 22 22 C 1.53000 * 109.47217 * 180.02562 * 20 19 18 23 23 C 1.53009 * 109.46747 * 175.00513 * 22 20 19 24 24 C 1.53002 * 109.46485 * 60.00367 * 20 19 18 25 25 C 1.53000 * 109.47326 * 299.99851 * 24 20 19 26 26 H 1.07998 * 120.00057 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99875 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00201 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47159 * 5.00255 * 3 2 1 30 30 H 1.09001 * 109.46973 * 244.99848 * 3 2 1 31 31 H 1.08991 * 109.47306 * 144.08994 * 5 4 3 32 32 H 1.09001 * 109.47372 * 24.08593 * 5 4 3 33 33 H 0.97004 * 120.00056 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.46477 * 299.99659 * 18 16 14 35 35 H 1.08997 * 109.47179 * 59.99533 * 18 16 14 36 36 H 1.09003 * 109.47807 * 59.99975 * 19 18 16 37 37 H 1.09003 * 109.46913 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.47259 * 294.99942 * 22 20 19 39 39 H 1.08994 * 109.47233 * 55.00476 * 22 20 19 40 40 H 1.08994 * 109.47284 * 59.99994 * 23 22 20 41 41 H 1.08996 * 109.47046 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.46775 * 299.99725 * 23 22 20 43 43 H 1.08997 * 109.47179 * 60.00239 * 24 20 19 44 44 H 1.09001 * 109.46917 * 179.97438 * 24 20 19 45 45 H 1.08997 * 109.47308 * 300.00309 * 25 24 20 46 46 H 1.09003 * 109.47293 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3846 0.9104 0.9465 6 6 4.5296 -0.5342 1.3507 7 1 3.6726 -1.0820 1.7137 8 6 5.7575 -1.1549 1.2619 9 7 6.8023 -0.4863 0.8249 10 14 5.9375 -2.9452 1.7636 11 1 4.6231 -3.4667 2.2172 12 1 6.4104 -3.7398 0.6016 13 1 6.9217 -3.0527 2.8702 14 6 2.5701 1.7444 2.3426 15 8 1.4028 2.0255 2.5133 16 6 3.5469 1.8565 3.4846 17 1 4.5479 2.0324 3.0907 18 6 3.1425 3.0223 4.3892 19 6 4.1339 3.1355 5.5490 20 6 4.1244 1.8363 6.3569 21 1 3.1233 1.6605 6.7505 22 6 5.1154 1.9498 7.5170 23 6 5.0160 0.7017 8.3965 24 6 4.5288 0.6704 5.4523 25 6 3.5374 0.5571 4.2925 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 5.0366 1.5277 1.5642 32 1 4.6624 1.0241 -0.1014 33 1 7.6663 -0.9229 0.7628 34 1 3.1489 3.9478 3.8136 35 1 2.1416 2.8463 4.7831 36 1 5.1351 3.3114 5.1554 37 1 3.8460 3.9664 6.1932 38 1 6.1278 2.0368 7.1229 39 1 4.8796 2.8327 8.1112 40 1 5.2518 -0.1811 7.8024 41 1 5.7217 0.7827 9.2233 42 1 4.0036 0.6147 8.7907 43 1 5.5299 0.8462 5.0587 44 1 4.5224 -0.2552 6.0279 45 1 2.5363 0.3813 4.6861 46 1 3.8252 -0.2738 3.6483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292209510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:00 Heat of formation + Delta-G solvation = -65.366943 kcal Electronic energy + Delta-G solvation = -23286.148120 eV Core-core repulsion = 20174.216871 eV Total energy + Delta-G solvation = -3111.931249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26081 -39.15478 -37.03911 -35.32184 -34.56566 -33.79210 -31.67244 -30.20770 -29.29746 -27.25011 -25.15580 -24.55833 -23.50121 -22.01543 -20.91420 -20.67090 -19.70677 -18.49030 -17.97931 -17.28452 -16.35954 -16.33859 -15.68587 -15.51360 -15.31968 -14.91759 -14.73670 -14.44495 -14.29435 -14.07177 -13.88082 -13.55629 -13.48979 -13.19950 -12.98905 -12.77258 -12.64996 -12.52366 -12.36374 -12.24166 -12.10112 -11.96753 -11.82430 -11.57160 -11.51375 -11.31262 -11.16694 -10.75543 -10.63444 -10.51025 -10.15038 -9.45895 -8.17349 -6.27580 1.31725 1.38054 1.42888 1.51595 1.82318 2.37809 2.54245 3.13665 3.69392 3.81425 3.84572 4.04242 4.09853 4.22159 4.29793 4.31319 4.47124 4.49542 4.54873 4.60153 4.65523 4.69489 4.74956 4.81526 4.84073 4.88577 4.99271 5.05294 5.13466 5.16397 5.19778 5.26221 5.30535 5.32045 5.38743 5.41192 5.50215 5.59362 5.68182 5.68611 5.73692 5.81175 5.92834 6.10645 6.59375 6.85994 7.35028 7.46216 8.88945 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.007379 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.048029 B = 3793.682203 C = 5381.471958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.174 4.174 3 C 0.143 3.857 4 N -0.598 5.598 5 C 0.251 3.749 6 C -0.523 4.523 7 H 0.051 0.949 8 C 0.027 3.973 9 N -0.918 5.918 10 Si 0.942 3.058 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.277 1.277 14 C 0.516 3.484 15 O -0.593 6.593 16 C -0.093 4.093 17 H 0.083 0.917 18 C -0.095 4.095 19 C -0.105 4.105 20 C -0.084 4.084 21 H 0.069 0.931 22 C -0.114 4.114 23 C -0.154 4.154 24 C -0.104 4.104 25 C -0.103 4.103 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.266 0.734 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 4.228 8.649 10.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C 0.021 3.979 4 N -0.328 5.328 5 C 0.130 3.870 6 C -0.562 4.562 7 H 0.070 0.930 8 C -0.173 4.173 9 N -0.558 5.558 10 Si 0.769 3.231 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.202 1.202 14 C 0.306 3.694 15 O -0.475 6.475 16 C -0.114 4.114 17 H 0.101 0.899 18 C -0.133 4.133 19 C -0.143 4.143 20 C -0.102 4.102 21 H 0.087 0.913 22 C -0.152 4.152 23 C -0.211 4.211 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.141 4.365 8.663 10.547 hybrid contribution 0.405 -1.242 -0.383 1.362 sum -3.736 3.123 8.279 9.605 Atomic orbital electron populations 1.23888 0.95182 1.02367 0.99631 1.23275 0.96624 0.98701 1.00702 1.20536 0.92305 0.95578 0.89501 1.48304 1.12687 1.62835 1.08937 1.19178 0.76502 0.94538 0.96783 1.21527 0.94565 0.96746 1.43343 0.93042 1.25483 0.95484 1.01200 0.95123 1.70000 1.00684 1.37978 1.47115 0.85736 0.78148 0.81146 0.78110 1.19694 1.20751 1.20233 1.21017 0.88784 0.75311 0.84260 1.90537 1.19653 1.53537 1.83800 1.21219 0.98332 0.98314 0.93536 0.89868 1.21353 0.99748 0.95844 0.96348 1.21553 0.98882 0.97847 0.95989 1.21188 0.99645 0.94301 0.95077 0.91292 1.21529 0.98891 0.98842 0.95928 1.21823 1.01915 0.97865 0.99524 1.21541 0.98163 0.99075 0.95380 1.21423 0.99360 0.96155 0.97181 0.87225 0.88115 0.88507 0.90694 0.89359 0.95233 0.96014 0.92501 0.92416 0.92104 0.91994 0.89934 0.92287 0.90801 0.93280 0.91991 0.92549 0.92743 0.91299 0.93181 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.42 14.32 67.78 0.97 -4.45 16 2 C -0.17 -6.37 9.82 25.65 0.25 -6.12 16 3 C 0.14 5.41 5.82 85.63 0.50 5.91 16 4 N -0.60 -25.65 2.47 -830.50 -2.05 -27.69 16 5 C 0.25 11.86 5.00 85.63 0.43 12.29 16 6 C -0.52 -26.45 7.54 25.60 0.19 -26.25 16 7 H 0.05 2.70 7.33 -2.91 -0.02 2.67 16 8 C 0.03 1.41 5.46 84.65 0.46 1.87 16 9 N -0.92 -49.58 13.29 21.45 0.28 -49.30 16 10 Si 0.94 41.46 29.54 68.60 2.03 43.49 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 14 C 0.52 22.08 6.60 87.66 0.58 22.66 16 15 O -0.59 -27.20 15.93 -3.03 -0.05 -27.25 16 16 C -0.09 -3.50 1.96 -11.54 -0.02 -3.52 16 17 H 0.08 3.35 5.85 -2.39 -0.01 3.33 16 18 C -0.09 -2.98 4.84 30.59 0.15 -2.83 16 19 C -0.11 -2.65 5.20 30.59 0.16 -2.49 16 20 C -0.08 -2.08 2.19 -10.79 -0.02 -2.10 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 C -0.11 -2.34 5.40 30.60 0.17 -2.17 16 23 C -0.15 -2.96 9.67 71.99 0.70 -2.26 16 24 C -0.10 -3.17 4.96 30.60 0.15 -3.02 16 25 C -0.10 -3.81 5.18 30.60 0.16 -3.65 16 26 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 27 H 0.10 2.98 7.84 -2.91 -0.02 2.96 16 28 H 0.10 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.07 2.73 7.26 -2.39 -0.02 2.72 16 30 H 0.09 3.09 7.80 -2.39 -0.02 3.08 16 31 H 0.03 1.47 5.93 -2.39 -0.01 1.45 16 32 H 0.02 1.09 7.79 -2.39 -0.02 1.07 16 33 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 2.00 7.85 -2.39 -0.02 1.98 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.03 6.57 -2.39 -0.02 1.02 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.96 6.56 -2.39 -0.02 1.95 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 2.75 5.66 -2.39 -0.01 2.74 16 Total: -1.00 -57.34 358.78 5.95 -51.39 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.92 Total: 25.48 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.81 Total: -16.13 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.76 Total: -76.99 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -57.34 5.95 -51.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292209510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.972 kcal (2) G-P(sol) polarization free energy of solvation -57.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds