Wall clock time and date at job start Tue Mar 31 2020 03:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99859 * 2 1 4 4 N 1.46504 * 109.47338 * 124.99594 * 3 2 1 5 5 C 1.46496 * 119.99880 * 270.00347 * 4 3 2 6 6 C 1.50703 * 109.47077 * 269.99336 * 5 4 3 7 7 H 1.08005 * 119.99703 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00292 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00314 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99869 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47168 * 90.00127 * 10 8 6 12 12 H 1.48497 * 109.46932 * 210.00102 * 10 8 6 13 13 H 1.48501 * 109.47042 * 330.00023 * 10 8 6 14 14 C 1.34777 * 119.99854 * 89.99608 * 4 3 2 15 15 O 1.21274 * 120.00135 * 180.27973 * 14 4 3 16 16 C 1.50706 * 119.99766 * 0.02562 * 14 4 3 17 17 C 1.52999 * 109.46573 * 179.97438 * 16 14 4 18 18 C 1.54240 * 108.90072 * 296.39618 * 17 16 14 19 19 C 1.50550 * 108.48685 * 159.18334 * 18 17 16 20 20 C 1.54068 * 112.41936 * 94.26475 * 19 18 17 21 21 C 1.54067 * 112.81462 * 318.28106 * 20 19 18 22 22 C 1.50473 * 112.49739 * 318.28520 * 21 20 19 23 23 C 1.45550 * 108.89334 * 173.60311 * 17 16 14 24 24 H 1.08001 * 120.00100 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00242 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99856 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46867 * 4.99673 * 3 2 1 28 28 H 1.08996 * 109.47188 * 244.99701 * 3 2 1 29 29 H 1.08997 * 109.47682 * 29.99532 * 5 4 3 30 30 H 1.09004 * 109.47271 * 149.99629 * 5 4 3 31 31 H 0.96999 * 120.00320 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47161 * 299.99737 * 16 14 4 33 33 H 1.09001 * 109.46740 * 59.99879 * 16 14 4 34 34 H 1.09002 * 108.87445 * 55.00254 * 17 16 14 35 35 H 1.09007 * 109.62244 * 278.97896 * 18 17 16 36 36 H 1.08996 * 109.62464 * 39.55193 * 18 17 16 37 37 H 1.09007 * 108.92182 * 333.50729 * 19 18 17 38 38 H 1.09002 * 108.91760 * 215.02307 * 19 18 17 39 39 H 1.08996 * 108.81464 * 197.42057 * 20 19 18 40 40 H 1.09005 * 108.72003 * 79.07885 * 20 19 18 41 41 H 1.08998 * 108.87757 * 197.50272 * 21 20 19 42 42 H 1.09007 * 108.87585 * 79.06185 * 21 20 19 43 43 H 1.09001 * 109.62691 * 334.44431 * 22 21 20 44 44 H 1.08997 * 109.62895 * 213.86849 * 22 21 20 45 45 H 1.09000 * 108.89722 * 303.44679 * 23 17 16 46 46 H 1.08999 * 108.89188 * 62.03311 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3437 2.4804 7 1 3.3032 3.8371 1.6365 8 6 2.5191 4.0667 3.6085 9 7 2.7677 5.3571 3.6568 10 14 1.7257 3.2131 5.0684 11 1 2.7823 2.7229 5.9895 12 1 0.8493 4.1729 5.7866 13 1 0.9146 2.0649 4.5897 14 6 4.2496 0.8662 0.9825 15 8 5.0181 0.8838 1.9205 16 6 4.6972 0.3183 -0.3481 17 6 6.1536 -0.1393 -0.2473 18 6 7.0426 1.0852 0.0516 19 6 8.3380 0.6009 0.6463 20 6 9.4406 0.4207 -0.4146 21 6 8.9206 -0.2262 -1.7126 22 6 7.9646 -1.3580 -1.4490 23 6 6.5260 -0.8033 -1.4878 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9313 29 1 1.4886 1.6967 2.5459 30 1 3.0987 1.3604 3.2260 31 1 2.5387 5.8658 4.4503 32 1 4.0680 -0.5284 -0.6226 33 1 4.6125 1.0952 -1.1080 34 1 6.2439 -0.8500 0.5743 35 1 7.2421 1.6271 -0.8729 36 1 6.5370 1.7400 0.7613 37 1 8.1646 -0.3551 1.1406 38 1 8.6777 1.3229 1.3889 39 1 10.2284 -0.2079 0.0004 40 1 9.8602 1.3982 -0.6526 41 1 9.7690 -0.6064 -2.2815 42 1 8.4124 0.5337 -2.3064 43 1 8.1657 -1.7858 -0.4668 44 1 8.0829 -2.1233 -2.2160 45 1 5.8350 -1.6266 -1.6688 46 1 6.4464 -0.0896 -2.3078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292285385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:13 Heat of formation + Delta-G solvation = -39.553898 kcal Electronic energy + Delta-G solvation = -22819.909240 eV Core-core repulsion = 19709.097328 eV Total energy + Delta-G solvation = -3110.811911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.85905 -38.27541 -35.72844 -33.62767 -33.05127 -32.09857 -31.90276 -29.10110 -27.30318 -25.47121 -24.66544 -23.63756 -21.91153 -20.15941 -19.94490 -19.18312 -18.23155 -16.88749 -16.36116 -15.81139 -15.47448 -15.18772 -14.51998 -14.42403 -14.28081 -14.03866 -13.40914 -13.13630 -12.86047 -12.74460 -12.51140 -12.27385 -12.12713 -11.99147 -11.69143 -11.60974 -11.50906 -11.07597 -10.91409 -10.64973 -10.52451 -10.44387 -10.36831 -10.22600 -10.18118 -10.07379 -9.89813 -9.53995 -9.25386 -8.82917 -8.57018 -7.68885 -6.07076 -4.05396 2.37196 3.30527 3.36589 3.38669 3.42245 3.94932 4.41375 4.65552 4.76069 4.89190 5.03306 5.16124 5.20210 5.22967 5.26780 5.32911 5.35395 5.46000 5.51429 5.55769 5.62761 5.77683 5.81725 5.84264 5.92599 5.95653 6.05657 6.13180 6.15457 6.21092 6.23741 6.27725 6.38691 6.47246 6.52327 6.71959 6.73700 6.75469 6.85139 6.87752 6.99520 7.40828 7.63950 8.30566 8.49460 8.95457 9.05606 9.53897 11.06338 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.005028 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.462058 B = 5567.514793 C = 6765.776476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.592 5.592 5 C 0.217 3.783 6 C -0.526 4.526 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.507 3.493 15 O -0.534 6.534 16 C -0.139 4.139 17 C -0.069 4.069 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.111 4.111 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -13.300 -12.490 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.187 4.187 3 C 0.013 3.987 4 N -0.323 5.323 5 C 0.096 3.904 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.295 3.705 15 O -0.412 6.412 16 C -0.179 4.179 17 C -0.088 4.088 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.076 -13.102 -11.847 18.379 hybrid contribution -0.575 -0.261 0.786 1.008 sum 4.501 -13.363 -11.062 17.922 Atomic orbital electron populations 1.23836 0.95877 1.01788 1.00781 1.23461 0.96376 0.99136 0.99722 1.20585 0.93126 0.95173 0.89864 1.47934 1.10953 1.60625 1.12772 1.19620 0.94772 0.95089 0.80889 1.21334 1.40978 0.91186 1.02991 0.90787 1.24841 0.95303 0.94701 0.98105 1.69895 1.47941 1.06602 1.29258 0.86871 0.79877 0.79673 0.83412 1.19942 1.21109 1.19074 1.20427 0.81803 0.78212 0.90081 1.90644 1.52208 1.56222 1.42095 1.21893 0.97787 1.01678 0.96591 1.19846 0.92917 0.97946 0.98100 1.21473 0.95243 0.97327 1.01022 1.21252 0.94907 1.01368 0.97427 1.21948 0.98039 1.00052 0.95451 1.21327 0.98689 0.97909 0.97536 1.21298 0.94745 0.97485 1.01776 1.20555 0.96436 0.99706 0.98171 0.88792 0.88242 0.87764 0.89409 0.90421 0.95442 0.94671 0.92613 0.89889 0.89552 0.90868 0.92761 0.89599 0.92282 0.92481 0.92852 0.92654 0.92943 0.92114 0.91606 0.92368 0.92581 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 14.32 29.01 0.42 -1.85 16 2 C -0.17 -2.25 9.74 -36.03 -0.35 -2.60 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.59 -12.06 2.44 -176.43 -0.43 -12.50 16 5 C 0.22 5.34 4.23 -5.19 -0.02 5.32 16 6 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 7 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 10 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 C 0.51 10.06 7.16 -10.98 -0.08 9.98 16 15 O -0.53 -12.67 13.63 5.56 0.08 -12.59 16 16 C -0.14 -1.99 3.65 -27.88 -0.10 -2.09 16 17 C -0.07 -0.94 1.38 -93.48 -0.13 -1.07 16 18 C -0.11 -1.71 4.62 -27.31 -0.13 -1.83 16 19 C -0.11 -1.53 5.32 -27.40 -0.15 -1.68 16 20 C -0.12 -1.30 5.85 -25.62 -0.15 -1.45 16 21 C -0.12 -1.17 5.31 -27.44 -0.15 -1.31 16 22 C -0.12 -1.14 5.61 -27.35 -0.15 -1.30 16 23 C -0.11 -1.18 4.44 -29.60 -0.13 -1.32 16 24 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 26 H 0.10 1.30 7.83 -52.49 -0.41 0.89 16 27 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 28 H 0.08 1.03 6.44 -51.93 -0.33 0.70 16 29 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 30 H 0.04 0.93 6.84 -51.93 -0.36 0.58 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 32 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 34 H 0.07 1.11 7.25 -51.93 -0.38 0.73 16 35 H 0.05 0.75 6.97 -51.93 -0.36 0.39 16 36 H 0.09 1.65 5.77 -51.93 -0.30 1.35 16 37 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.62 6.62 -51.92 -0.34 0.27 16 43 H 0.07 0.70 6.98 -51.93 -0.36 0.33 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 46 H 0.06 0.61 7.46 -51.93 -0.39 0.22 16 LS Contribution 350.70 15.07 5.29 5.29 Total: -1.00 -32.40 350.70 -8.64 -41.04 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.09 Total: 1.19 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.59 Total: -12.53 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.34 Total: -39.53 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.40 -8.64 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292285385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.488 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds