Wall clock time and date at job start Tue Mar 31 2020 03:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99859 * 2 1 4 4 N 1.46504 * 109.47338 * 124.99594 * 3 2 1 5 5 C 1.46496 * 119.99880 * 270.00347 * 4 3 2 6 6 C 1.50703 * 109.47077 * 269.99336 * 5 4 3 7 7 H 1.08005 * 119.99703 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00292 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00314 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99869 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47168 * 90.00127 * 10 8 6 12 12 H 1.48497 * 109.46932 * 210.00102 * 10 8 6 13 13 H 1.48501 * 109.47042 * 330.00023 * 10 8 6 14 14 C 1.34777 * 119.99854 * 89.99608 * 4 3 2 15 15 O 1.21274 * 120.00135 * 180.27973 * 14 4 3 16 16 C 1.50706 * 119.99766 * 0.02562 * 14 4 3 17 17 C 1.52999 * 109.46573 * 179.97438 * 16 14 4 18 18 C 1.54240 * 108.90072 * 296.39618 * 17 16 14 19 19 C 1.50550 * 108.48685 * 159.18334 * 18 17 16 20 20 C 1.54068 * 112.41936 * 94.26475 * 19 18 17 21 21 C 1.54067 * 112.81462 * 318.28106 * 20 19 18 22 22 C 1.50473 * 112.49739 * 318.28520 * 21 20 19 23 23 C 1.45550 * 108.89334 * 173.60311 * 17 16 14 24 24 H 1.08001 * 120.00100 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00242 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99856 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46867 * 4.99673 * 3 2 1 28 28 H 1.08996 * 109.47188 * 244.99701 * 3 2 1 29 29 H 1.08997 * 109.47682 * 29.99532 * 5 4 3 30 30 H 1.09004 * 109.47271 * 149.99629 * 5 4 3 31 31 H 0.96999 * 120.00320 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47161 * 299.99737 * 16 14 4 33 33 H 1.09001 * 109.46740 * 59.99879 * 16 14 4 34 34 H 1.09002 * 108.87445 * 55.00254 * 17 16 14 35 35 H 1.09007 * 109.62244 * 278.97896 * 18 17 16 36 36 H 1.08996 * 109.62464 * 39.55193 * 18 17 16 37 37 H 1.09007 * 108.92182 * 333.50729 * 19 18 17 38 38 H 1.09002 * 108.91760 * 215.02307 * 19 18 17 39 39 H 1.08996 * 108.81464 * 197.42057 * 20 19 18 40 40 H 1.09005 * 108.72003 * 79.07885 * 20 19 18 41 41 H 1.08998 * 108.87757 * 197.50272 * 21 20 19 42 42 H 1.09007 * 108.87585 * 79.06185 * 21 20 19 43 43 H 1.09001 * 109.62691 * 334.44431 * 22 21 20 44 44 H 1.08997 * 109.62895 * 213.86849 * 22 21 20 45 45 H 1.09000 * 108.89722 * 303.44679 * 23 17 16 46 46 H 1.08999 * 108.89188 * 62.03311 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3437 2.4804 7 1 3.3032 3.8371 1.6365 8 6 2.5191 4.0667 3.6085 9 7 2.7677 5.3571 3.6568 10 14 1.7257 3.2131 5.0684 11 1 2.7823 2.7229 5.9895 12 1 0.8493 4.1729 5.7866 13 1 0.9146 2.0649 4.5897 14 6 4.2496 0.8662 0.9825 15 8 5.0181 0.8838 1.9205 16 6 4.6972 0.3183 -0.3481 17 6 6.1536 -0.1393 -0.2473 18 6 7.0426 1.0852 0.0516 19 6 8.3380 0.6009 0.6463 20 6 9.4406 0.4207 -0.4146 21 6 8.9206 -0.2262 -1.7126 22 6 7.9646 -1.3580 -1.4490 23 6 6.5260 -0.8033 -1.4878 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9313 29 1 1.4886 1.6967 2.5459 30 1 3.0987 1.3604 3.2260 31 1 2.5387 5.8658 4.4503 32 1 4.0680 -0.5284 -0.6226 33 1 4.6125 1.0952 -1.1080 34 1 6.2439 -0.8500 0.5743 35 1 7.2421 1.6271 -0.8729 36 1 6.5370 1.7400 0.7613 37 1 8.1646 -0.3551 1.1406 38 1 8.6777 1.3229 1.3889 39 1 10.2284 -0.2079 0.0004 40 1 9.8602 1.3982 -0.6526 41 1 9.7690 -0.6064 -2.2815 42 1 8.4124 0.5337 -2.3064 43 1 8.1657 -1.7858 -0.4668 44 1 8.0829 -2.1233 -2.2160 45 1 5.8350 -1.6266 -1.6688 46 1 6.4464 -0.0896 -2.3078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292285385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:13 Heat of formation + Delta-G solvation = -57.995692 kcal Electronic energy + Delta-G solvation = -22820.708936 eV Core-core repulsion = 19709.097328 eV Total energy + Delta-G solvation = -3111.611608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21402 -39.48713 -37.19802 -35.15577 -34.47643 -33.72994 -32.88859 -30.79109 -28.71196 -26.84777 -25.67277 -24.98869 -23.55992 -21.26413 -21.00944 -20.18012 -19.67529 -19.09006 -17.80050 -17.30748 -16.58025 -16.52223 -16.00503 -15.68278 -15.47677 -15.32076 -14.84178 -14.47774 -14.28593 -13.98828 -13.75456 -13.64164 -13.56639 -13.28232 -12.97296 -12.93671 -12.88442 -12.55009 -12.44064 -12.21448 -11.95746 -11.75010 -11.58823 -11.41575 -11.36299 -11.20698 -11.15652 -10.93999 -10.84536 -10.43002 -10.30246 -9.38396 -8.35311 -6.39709 1.29200 1.33723 1.35056 1.42645 1.88896 2.29053 2.47845 2.99203 3.67490 3.74937 3.77957 4.00364 4.10806 4.22629 4.24727 4.25551 4.38191 4.43240 4.48931 4.54122 4.59173 4.71316 4.75698 4.80141 4.87550 4.91967 4.94012 4.98466 5.08801 5.12371 5.18887 5.26984 5.34864 5.36933 5.42297 5.45449 5.46414 5.56202 5.59713 5.64238 5.70481 5.73126 5.94115 6.24445 6.61411 6.75676 7.21706 7.50332 8.81713 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.005028 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.462058 B = 5567.514793 C = 6765.776476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C 0.132 3.868 4 N -0.601 5.601 5 C 0.228 3.772 6 C -0.533 4.533 7 H 0.029 0.971 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.241 1.241 14 C 0.496 3.504 15 O -0.584 6.584 16 C -0.128 4.128 17 C -0.060 4.060 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.109 4.109 24 H 0.118 0.882 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -16.108 -14.318 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.199 4.199 3 C 0.010 3.990 4 N -0.331 5.331 5 C 0.106 3.894 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.768 3.232 11 H -0.203 1.203 12 H -0.198 1.198 13 H -0.164 1.164 14 C 0.286 3.714 15 O -0.465 6.465 16 C -0.167 4.167 17 C -0.079 4.079 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.147 4.147 24 H 0.136 0.864 25 H 0.115 0.885 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.124 -15.928 -13.730 21.430 hybrid contribution -0.263 0.705 1.321 1.520 sum 3.862 -15.223 -12.410 20.016 Atomic orbital electron populations 1.24067 0.95561 1.02881 0.98433 1.23316 0.96686 0.98137 1.01754 1.20815 0.92647 0.96395 0.89147 1.48043 1.12242 1.60275 1.12547 1.19214 0.95085 0.92074 0.83050 1.21557 1.40334 0.93501 1.01726 0.95303 1.25810 0.95965 0.95335 1.01436 1.70044 1.49534 1.08452 1.30508 0.85753 0.79075 0.79366 0.79000 1.20289 1.19828 1.16397 1.21487 0.80947 0.77312 0.91665 1.90619 1.53426 1.58143 1.44304 1.21940 0.98567 1.03036 0.93157 1.19797 0.92148 0.96702 0.99239 1.21386 0.95789 0.97603 1.00127 1.21220 0.95397 1.00216 0.98004 1.21910 0.97056 1.00654 0.95430 1.21340 0.99496 0.97946 0.96577 1.21307 0.94036 0.97835 1.02005 1.20521 0.97491 1.00312 0.96330 0.86365 0.88499 0.86272 0.90945 0.87836 0.94001 0.96689 0.92297 0.86438 0.87885 0.92834 0.91577 0.94662 0.92957 0.94614 0.91852 0.92545 0.91098 0.92094 0.92629 0.90140 0.90612 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 14.32 67.78 0.97 -2.68 16 2 C -0.18 -4.33 9.74 25.64 0.25 -4.08 16 3 C 0.13 4.00 5.65 85.63 0.48 4.49 16 4 N -0.60 -24.64 2.44 -830.51 -2.03 -26.67 16 5 C 0.23 11.42 4.23 85.63 0.36 11.79 16 6 C -0.53 -31.94 9.94 25.60 0.25 -31.68 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 8 C 0.01 0.75 5.47 84.65 0.46 1.21 16 9 N -0.95 -60.64 13.96 21.44 0.30 -60.34 16 10 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 14 C 0.50 19.98 7.16 87.66 0.63 20.60 16 15 O -0.58 -29.16 13.63 -3.01 -0.04 -29.20 16 16 C -0.13 -3.43 3.65 29.85 0.11 -3.32 16 17 C -0.06 -1.57 1.38 -12.65 -0.02 -1.59 16 18 C -0.11 -3.46 4.62 30.22 0.14 -3.32 16 19 C -0.11 -3.15 5.32 30.16 0.16 -2.99 16 20 C -0.11 -2.40 5.85 31.32 0.18 -2.22 16 21 C -0.12 -2.01 5.31 30.14 0.16 -1.85 16 22 C -0.11 -1.92 5.61 30.20 0.17 -1.75 16 23 C -0.11 -1.98 4.44 28.74 0.13 -1.86 16 24 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 25 H 0.10 2.11 7.84 -2.91 -0.02 2.09 16 26 H 0.12 2.54 7.83 -2.91 -0.02 2.51 16 27 H 0.07 2.39 7.72 -2.39 -0.02 2.37 16 28 H 0.10 2.53 6.44 -2.39 -0.02 2.52 16 29 H 0.04 1.97 7.13 -2.39 -0.02 1.95 16 30 H 0.02 0.81 6.84 -2.38 -0.02 0.80 16 31 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 32 H 0.12 2.39 7.68 -2.39 -0.02 2.37 16 33 H 0.10 2.47 7.40 -2.39 -0.02 2.45 16 34 H 0.05 1.62 7.25 -2.39 -0.02 1.60 16 35 H 0.07 1.83 6.97 -2.38 -0.02 1.81 16 36 H 0.03 1.45 5.77 -2.39 -0.01 1.44 16 37 H 0.05 1.52 6.63 -2.38 -0.02 1.51 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.07 6.62 -2.38 -0.02 1.05 16 43 H 0.05 1.06 6.98 -2.39 -0.02 1.05 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.13 8.04 -2.39 -0.02 1.11 16 46 H 0.07 1.17 7.46 -2.39 -0.02 1.15 16 Total: -1.00 -75.62 350.70 5.43 -70.20 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.87 Total: 17.85 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.44 Total: -19.25 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -1.73 Total: -87.01 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.04 Total: -29.20 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -75.62 5.43 -70.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292285385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.200 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds