Wall clock time and date at job start Tue Mar 31 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50696 * 119.99986 * 2 1 4 4 N 1.46499 * 109.47376 * 235.45069 * 3 2 1 5 5 C 1.46500 * 119.99784 * 274.04937 * 4 3 2 6 6 C 1.50705 * 109.47281 * 86.90097 * 5 4 3 7 7 H 1.08004 * 119.99640 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00389 * 179.97438 * 6 5 4 9 9 N 1.31526 * 119.99947 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00279 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47239 * 120.00190 * 10 8 6 13 13 H 1.48501 * 109.46924 * 240.00337 * 10 8 6 14 14 C 1.34775 * 120.00473 * 94.04668 * 4 3 2 15 15 O 1.21283 * 119.99552 * 4.47307 * 14 4 3 16 16 C 1.50694 * 120.00237 * 184.46922 * 14 4 3 17 17 C 1.53018 * 109.47370 * 288.08733 * 16 14 4 18 18 C 1.52985 * 109.46235 * 164.04885 * 17 16 14 19 19 C 1.52985 * 109.51076 * 315.98797 * 18 17 16 20 20 C 1.53004 * 109.47101 * 112.93509 * 19 18 17 21 21 C 1.53000 * 109.43385 * 284.04655 * 20 19 18 22 22 C 1.52981 * 109.48722 * 75.95970 * 21 20 19 23 23 C 1.53000 * 109.50744 * 247.06481 * 22 21 20 24 24 H 1.08001 * 120.00296 * 0.27179 * 1 2 3 25 25 H 1.08002 * 120.00285 * 180.27092 * 1 2 3 26 26 H 1.08001 * 120.00296 * 179.72821 * 2 1 3 27 27 H 1.09006 * 109.47221 * 355.45014 * 3 2 1 28 28 H 1.09002 * 109.47411 * 115.44780 * 3 2 1 29 29 H 1.09001 * 109.47169 * 206.89697 * 5 4 3 30 30 H 1.09001 * 109.47439 * 326.89960 * 5 4 3 31 31 H 0.96996 * 119.99868 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47529 * 48.08691 * 16 14 4 33 33 H 1.09004 * 109.47161 * 284.04484 * 17 16 14 34 34 H 1.09002 * 109.46919 * 44.04542 * 17 16 14 35 35 H 1.09005 * 109.46597 * 195.98080 * 18 17 16 36 36 H 1.09004 * 109.46156 * 75.99770 * 18 17 16 37 37 H 1.09010 * 109.46911 * 352.93621 * 19 18 17 38 38 H 1.09002 * 109.47262 * 232.93814 * 19 18 17 39 39 H 1.08998 * 109.47689 * 164.05654 * 20 19 18 40 40 H 1.08999 * 109.47981 * 44.03743 * 20 19 18 41 41 H 1.09007 * 109.46858 * 315.95655 * 21 20 19 42 42 H 1.09004 * 109.46972 * 195.96152 * 21 20 19 43 43 H 1.08998 * 109.47030 * 127.05310 * 22 21 20 44 44 H 1.08997 * 109.46910 * 7.07386 * 22 21 20 45 45 H 1.08998 * 109.47453 * 284.01422 * 23 22 21 46 46 H 1.09001 * 109.47691 * 164.00336 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9859 1.3364 -1.1376 5 6 4.3224 0.7492 -1.0132 6 6 4.2584 -0.7198 -1.3433 7 1 3.3165 -1.1708 -1.6187 8 6 5.4024 -1.4878 -1.2949 9 7 6.5495 -0.9384 -0.9601 10 14 5.3232 -3.3085 -1.7048 11 1 3.9266 -3.6783 -2.0482 12 1 6.2091 -3.5945 -2.8617 13 1 5.7709 -4.1001 -0.5308 14 6 2.6053 1.9053 -2.2986 15 8 1.5310 2.4627 -2.3771 16 6 3.5144 1.8489 -3.4991 17 6 4.7078 2.7811 -3.2794 18 6 5.8122 2.4401 -4.2817 19 6 5.9779 0.9214 -4.3625 20 6 5.5419 0.4336 -5.7456 21 6 4.0141 0.4329 -5.8269 22 6 3.5115 1.8677 -5.9973 23 6 2.7433 2.2922 -4.7441 24 1 -0.5401 0.9353 -0.0044 25 1 -0.5401 -0.9353 0.0044 26 1 1.8500 -0.9353 0.0044 27 1 1.3579 2.1320 -0.0815 28 1 2.6275 1.3990 0.9280 29 1 5.0037 1.2472 -1.7031 30 1 4.6818 0.8768 0.0079 31 1 7.3543 -1.4788 -0.9256 32 1 3.8713 0.8282 -3.6370 33 1 4.3929 3.8146 -3.4234 34 1 5.0859 2.6544 -2.2649 35 1 6.7498 2.8909 -3.9564 36 1 5.5438 2.8290 -5.2640 37 1 5.3608 0.4475 -3.5989 38 1 7.0234 0.6607 -4.1981 39 1 5.9151 -0.5774 -5.9086 40 1 5.9463 1.0979 -6.5094 41 1 3.6017 0.0099 -4.9108 42 1 3.6959 -0.1671 -6.6795 43 1 2.8516 1.9211 -6.8633 44 1 4.3605 2.5348 -6.1463 45 1 1.7580 1.8261 -4.7465 46 1 2.6323 3.3766 -4.7357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292304105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:09 Heat of formation + Delta-G solvation = -24.423356 kcal Electronic energy + Delta-G solvation = -24196.194623 eV Core-core repulsion = 21086.038822 eV Total energy + Delta-G solvation = -3110.155802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02984 -37.80243 -35.44125 -33.48942 -32.52482 -32.30265 -31.89983 -27.56566 -27.07809 -25.52678 -24.97005 -22.98342 -21.55656 -20.34572 -19.92435 -19.05542 -18.11515 -16.71069 -16.33968 -15.65118 -14.95199 -14.62452 -14.51426 -14.03382 -13.71790 -13.71581 -13.40492 -12.98128 -12.88982 -12.70489 -12.30576 -12.05664 -11.73132 -11.52957 -11.28158 -11.13955 -10.97445 -10.85283 -10.81893 -10.70372 -10.55854 -10.52929 -10.24180 -10.06026 -9.89534 -9.61291 -9.44022 -9.21915 -9.07669 -8.72256 -8.47649 -7.67992 -6.18231 -4.24251 2.74879 3.19469 3.29301 3.32467 3.50625 4.11236 4.33547 5.00671 5.13575 5.21877 5.24643 5.45705 5.47379 5.53194 5.55401 5.64178 5.68074 5.74695 5.76841 5.94355 6.03475 6.11364 6.19878 6.21976 6.29816 6.36109 6.38616 6.40916 6.44536 6.47675 6.55602 6.62573 6.65833 6.77207 6.83895 6.85775 6.93609 7.16432 7.18901 7.29573 7.32642 7.60121 7.76478 8.07635 8.40739 8.81214 9.09468 9.42955 10.87717 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.009952 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.389582 B = 2812.850925 C = 4297.732024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.144 3.856 4 N -0.594 5.594 5 C 0.221 3.779 6 C -0.534 4.534 7 H 0.061 0.939 8 C 0.070 3.930 9 N -0.886 5.886 10 Si 0.885 3.115 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.284 1.284 14 C 0.519 3.481 15 O -0.577 6.577 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.138 4.138 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.096 4.096 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.133 0.867 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 4.139 -5.388 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.164 4.164 3 C 0.020 3.980 4 N -0.324 5.324 5 C 0.101 3.899 6 C -0.572 4.572 7 H 0.080 0.920 8 C -0.133 4.133 9 N -0.524 5.524 10 Si 0.713 3.287 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.210 1.210 14 C 0.308 3.692 15 O -0.459 6.459 16 C -0.142 4.142 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.175 4.175 20 C -0.152 4.152 21 C -0.169 4.169 22 C -0.162 4.162 23 C -0.134 4.134 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.415 4.395 -5.374 7.350 hybrid contribution 0.156 -1.320 -0.066 1.331 sum -2.259 3.074 -5.440 6.645 Atomic orbital electron populations 1.23694 0.95992 1.00965 1.03551 1.23530 0.95809 1.00059 0.96999 1.20383 0.92714 0.95165 0.89695 1.48209 1.16944 1.56274 1.10955 1.19828 0.77561 0.93717 0.98766 1.21526 0.94710 0.93727 1.47263 0.92039 1.24866 0.95278 0.98250 0.94945 1.69925 0.99007 1.36016 1.47427 0.86632 0.78329 0.85551 0.78207 1.19711 1.20759 1.20977 1.20665 0.86737 0.77321 0.84455 1.90559 1.24827 1.46041 1.84430 1.21843 0.95375 1.04542 0.92483 1.21746 0.94538 0.97806 1.00950 1.21772 0.97750 0.96883 0.99098 1.21940 1.02346 0.95385 0.97808 1.21668 0.95396 1.00548 0.97591 1.21856 0.96157 0.96674 1.02176 1.21866 0.99962 0.97004 0.97337 1.21408 0.98428 1.00785 0.92759 0.89119 0.89195 0.86318 0.90653 0.90620 0.92262 0.95082 0.92676 0.85028 0.92588 0.90306 0.92663 0.91642 0.87867 0.92488 0.92700 0.92732 0.90371 0.92952 0.92799 0.91053 0.91837 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.37 14.32 29.02 0.42 -2.95 16 2 C -0.14 -2.69 9.42 -36.03 -0.34 -3.03 16 3 C 0.14 2.73 5.97 -5.20 -0.03 2.70 16 4 N -0.59 -12.42 2.46 -176.43 -0.43 -12.86 16 5 C 0.22 4.98 4.53 -5.19 -0.02 4.96 16 6 C -0.53 -13.00 7.84 -34.44 -0.27 -13.27 16 7 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -22.90 13.29 55.43 0.74 -22.16 16 10 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.52 10.89 6.89 -10.99 -0.08 10.82 16 15 O -0.58 -13.21 15.38 5.55 0.09 -13.12 16 16 C -0.12 -2.22 1.17 -91.76 -0.11 -2.33 16 17 C -0.11 -1.89 4.51 -26.73 -0.12 -2.01 16 18 C -0.12 -1.78 5.48 -26.75 -0.15 -1.93 16 19 C -0.14 -2.32 5.47 -26.74 -0.15 -2.47 16 20 C -0.11 -1.69 5.59 -26.73 -0.15 -1.84 16 21 C -0.13 -1.94 5.47 -26.74 -0.15 -2.09 16 22 C -0.12 -1.72 5.48 -26.74 -0.15 -1.87 16 23 C -0.10 -1.56 4.51 -26.72 -0.12 -1.68 16 24 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 25 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.12 2.36 7.08 -52.49 -0.37 1.99 16 27 H 0.08 1.42 6.90 -51.93 -0.36 1.06 16 28 H 0.08 1.34 7.97 -51.93 -0.41 0.92 16 29 H 0.06 1.34 3.22 -51.93 -0.17 1.17 16 30 H 0.03 0.75 7.97 -51.93 -0.41 0.34 16 31 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.13 2.57 2.17 -51.93 -0.11 2.46 16 33 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 34 H 0.08 1.45 5.50 -51.93 -0.29 1.16 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.89 4.69 -51.93 -0.24 0.64 16 37 H 0.10 2.07 3.86 -51.92 -0.20 1.87 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.71 7.47 -51.93 -0.39 0.32 16 41 H 0.08 1.34 5.47 -51.93 -0.28 1.06 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.93 4.69 -51.93 -0.24 0.69 16 45 H 0.06 1.12 7.74 -51.93 -0.40 0.72 16 46 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -26.38 336.44 -8.22 -34.60 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.15 Total: 8.97 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.51 Total: -15.35 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.30 Total: -35.02 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.38 -8.22 -34.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292304105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.175 kcal (2) G-P(sol) polarization free energy of solvation -26.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds