Wall clock time and date at job start Tue Mar 31 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50696 * 119.99986 * 2 1 4 4 N 1.46499 * 109.47376 * 235.45069 * 3 2 1 5 5 C 1.46500 * 119.99784 * 274.04937 * 4 3 2 6 6 C 1.50705 * 109.47281 * 86.90097 * 5 4 3 7 7 H 1.08004 * 119.99640 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00389 * 179.97438 * 6 5 4 9 9 N 1.31526 * 119.99947 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00279 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47239 * 120.00190 * 10 8 6 13 13 H 1.48501 * 109.46924 * 240.00337 * 10 8 6 14 14 C 1.34775 * 120.00473 * 94.04668 * 4 3 2 15 15 O 1.21283 * 119.99552 * 4.47307 * 14 4 3 16 16 C 1.50694 * 120.00237 * 184.46922 * 14 4 3 17 17 C 1.53018 * 109.47370 * 288.08733 * 16 14 4 18 18 C 1.52985 * 109.46235 * 164.04885 * 17 16 14 19 19 C 1.52985 * 109.51076 * 315.98797 * 18 17 16 20 20 C 1.53004 * 109.47101 * 112.93509 * 19 18 17 21 21 C 1.53000 * 109.43385 * 284.04655 * 20 19 18 22 22 C 1.52981 * 109.48722 * 75.95970 * 21 20 19 23 23 C 1.53000 * 109.50744 * 247.06481 * 22 21 20 24 24 H 1.08001 * 120.00296 * 0.27179 * 1 2 3 25 25 H 1.08002 * 120.00285 * 180.27092 * 1 2 3 26 26 H 1.08001 * 120.00296 * 179.72821 * 2 1 3 27 27 H 1.09006 * 109.47221 * 355.45014 * 3 2 1 28 28 H 1.09002 * 109.47411 * 115.44780 * 3 2 1 29 29 H 1.09001 * 109.47169 * 206.89697 * 5 4 3 30 30 H 1.09001 * 109.47439 * 326.89960 * 5 4 3 31 31 H 0.96996 * 119.99868 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47529 * 48.08691 * 16 14 4 33 33 H 1.09004 * 109.47161 * 284.04484 * 17 16 14 34 34 H 1.09002 * 109.46919 * 44.04542 * 17 16 14 35 35 H 1.09005 * 109.46597 * 195.98080 * 18 17 16 36 36 H 1.09004 * 109.46156 * 75.99770 * 18 17 16 37 37 H 1.09010 * 109.46911 * 352.93621 * 19 18 17 38 38 H 1.09002 * 109.47262 * 232.93814 * 19 18 17 39 39 H 1.08998 * 109.47689 * 164.05654 * 20 19 18 40 40 H 1.08999 * 109.47981 * 44.03743 * 20 19 18 41 41 H 1.09007 * 109.46858 * 315.95655 * 21 20 19 42 42 H 1.09004 * 109.46972 * 195.96152 * 21 20 19 43 43 H 1.08998 * 109.47030 * 127.05310 * 22 21 20 44 44 H 1.08997 * 109.46910 * 7.07386 * 22 21 20 45 45 H 1.08998 * 109.47453 * 284.01422 * 23 22 21 46 46 H 1.09001 * 109.47691 * 164.00336 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9859 1.3364 -1.1376 5 6 4.3224 0.7492 -1.0132 6 6 4.2584 -0.7198 -1.3433 7 1 3.3165 -1.1708 -1.6187 8 6 5.4024 -1.4878 -1.2949 9 7 6.5495 -0.9384 -0.9601 10 14 5.3232 -3.3085 -1.7048 11 1 3.9266 -3.6783 -2.0482 12 1 6.2091 -3.5945 -2.8617 13 1 5.7709 -4.1001 -0.5308 14 6 2.6053 1.9053 -2.2986 15 8 1.5310 2.4627 -2.3771 16 6 3.5144 1.8489 -3.4991 17 6 4.7078 2.7811 -3.2794 18 6 5.8122 2.4401 -4.2817 19 6 5.9779 0.9214 -4.3625 20 6 5.5419 0.4336 -5.7456 21 6 4.0141 0.4329 -5.8269 22 6 3.5115 1.8677 -5.9973 23 6 2.7433 2.2922 -4.7441 24 1 -0.5401 0.9353 -0.0044 25 1 -0.5401 -0.9353 0.0044 26 1 1.8500 -0.9353 0.0044 27 1 1.3579 2.1320 -0.0815 28 1 2.6275 1.3990 0.9280 29 1 5.0037 1.2472 -1.7031 30 1 4.6818 0.8768 0.0079 31 1 7.3543 -1.4788 -0.9256 32 1 3.8713 0.8282 -3.6370 33 1 4.3929 3.8146 -3.4234 34 1 5.0859 2.6544 -2.2649 35 1 6.7498 2.8909 -3.9564 36 1 5.5438 2.8290 -5.2640 37 1 5.3608 0.4475 -3.5989 38 1 7.0234 0.6607 -4.1981 39 1 5.9151 -0.5774 -5.9086 40 1 5.9463 1.0979 -6.5094 41 1 3.6017 0.0099 -4.9108 42 1 3.6959 -0.1671 -6.6795 43 1 2.8516 1.9211 -6.8633 44 1 4.3605 2.5348 -6.1463 45 1 1.7580 1.8261 -4.7465 46 1 2.6323 3.3766 -4.7357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292304105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:08 Heat of formation + Delta-G solvation = -35.994655 kcal Electronic energy + Delta-G solvation = -24196.696393 eV Core-core repulsion = 21086.038822 eV Total energy + Delta-G solvation = -3110.657571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53975 -39.23842 -37.12440 -35.10680 -34.16867 -33.58644 -33.38049 -29.32265 -28.55120 -26.86294 -26.40728 -24.82937 -22.86904 -21.58652 -21.35202 -20.51189 -19.60907 -18.57391 -17.96109 -17.25376 -16.45812 -16.32824 -16.02830 -15.51742 -15.01731 -14.97548 -14.94382 -14.42613 -14.24479 -14.18816 -14.00945 -13.52949 -13.37147 -13.17418 -12.73908 -12.71972 -12.55572 -12.39775 -12.26974 -12.11225 -11.91643 -11.88543 -11.80832 -11.55903 -11.40270 -11.17098 -10.78742 -10.65216 -10.51853 -10.42035 -10.16173 -9.41797 -8.12780 -6.23163 1.30597 1.38048 1.43816 1.51310 1.84668 2.39802 2.57700 3.17854 3.69498 3.82440 3.98966 4.07548 4.15333 4.24006 4.27049 4.31590 4.38042 4.43969 4.47734 4.50446 4.70098 4.76188 4.87781 4.90817 4.92276 5.01122 5.06920 5.11115 5.12646 5.16041 5.25463 5.30607 5.36130 5.37827 5.44321 5.54026 5.59440 5.70080 5.72667 5.76311 5.81056 5.90026 5.95047 6.15867 6.65321 6.89634 7.37392 7.49567 8.92386 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.009952 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.389582 B = 2812.850925 C = 4297.732024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.140 3.860 4 N -0.597 5.597 5 C 0.235 3.765 6 C -0.531 4.531 7 H 0.048 0.952 8 C 0.036 3.964 9 N -0.908 5.908 10 Si 0.934 3.066 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.283 1.283 14 C 0.511 3.489 15 O -0.599 6.599 16 C -0.119 4.119 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.091 4.091 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.011 0.989 31 H 0.265 0.735 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 4.460 -7.096 8.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.018 3.982 4 N -0.327 5.327 5 C 0.115 3.885 6 C -0.570 4.570 7 H 0.066 0.934 8 C -0.165 4.165 9 N -0.547 5.547 10 Si 0.761 3.239 11 H -0.200 1.200 12 H -0.203 1.203 13 H -0.209 1.209 14 C 0.301 3.699 15 O -0.482 6.482 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.174 4.174 20 C -0.147 4.147 21 C -0.168 4.168 22 C -0.153 4.153 23 C -0.129 4.129 24 H 0.118 0.882 25 H 0.129 0.871 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.682 4.710 -7.074 8.912 hybrid contribution 0.158 -1.422 0.529 1.525 sum -2.524 3.289 -6.545 7.747 Atomic orbital electron populations 1.23913 0.95182 1.02387 1.00132 1.23346 0.96578 0.98910 1.00217 1.20496 0.92658 0.95656 0.89436 1.48251 1.16650 1.55985 1.11775 1.19554 0.78509 0.93074 0.97386 1.21553 0.94075 0.94573 1.46755 0.93351 1.25359 0.95057 1.01091 0.94971 1.69993 0.99374 1.37048 1.48316 0.85864 0.78010 0.82039 0.77972 1.19965 1.20290 1.20933 1.21229 0.86890 0.76682 0.85058 1.90530 1.25778 1.47026 1.84849 1.21875 0.95538 1.04449 0.92105 1.21694 0.94439 0.98200 1.00247 1.21741 0.97455 0.95652 0.99828 1.21870 1.00790 0.96505 0.98281 1.21651 0.95401 1.00900 0.96773 1.21823 0.96047 0.97536 1.01382 1.21829 1.00515 0.96357 0.96552 1.21379 0.97615 1.00864 0.93035 0.88159 0.87137 0.88146 0.90467 0.89959 0.92026 0.97123 0.92618 0.86175 0.91183 0.92582 0.91863 0.89148 0.91297 0.93749 0.93132 0.90061 0.93357 0.91271 0.90689 0.89526 0.93640 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 14.32 67.79 0.97 -4.70 16 2 C -0.17 -6.40 9.42 25.65 0.24 -6.16 16 3 C 0.14 5.42 5.97 85.63 0.51 5.94 16 4 N -0.60 -25.63 2.46 -830.50 -2.04 -27.67 16 5 C 0.23 10.97 4.53 85.63 0.39 11.35 16 6 C -0.53 -26.56 7.84 25.60 0.20 -26.35 16 7 H 0.05 2.52 7.06 -2.91 -0.02 2.50 16 8 C 0.04 1.83 5.46 84.65 0.46 2.30 16 9 N -0.91 -47.67 13.29 21.45 0.28 -47.38 16 10 Si 0.93 41.10 29.54 68.60 2.03 43.13 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 14 C 0.51 21.71 6.89 87.66 0.60 22.32 16 15 O -0.60 -27.48 15.38 -3.04 -0.05 -27.53 16 16 C -0.12 -4.33 1.17 -11.53 -0.01 -4.34 16 17 C -0.11 -3.54 4.51 30.60 0.14 -3.41 16 18 C -0.11 -3.12 5.48 30.58 0.17 -2.95 16 19 C -0.14 -4.53 5.47 30.59 0.17 -4.36 16 20 C -0.11 -3.01 5.59 30.60 0.17 -2.84 16 21 C -0.13 -3.61 5.47 30.59 0.17 -3.44 16 22 C -0.12 -2.86 5.48 30.59 0.17 -2.69 16 23 C -0.09 -2.84 4.51 30.60 0.14 -2.71 16 24 H 0.10 3.01 7.84 -2.91 -0.02 2.99 16 25 H 0.11 3.04 8.06 -2.91 -0.02 3.02 16 26 H 0.10 4.12 7.08 -2.91 -0.02 4.09 16 27 H 0.08 2.93 6.90 -2.38 -0.02 2.92 16 28 H 0.08 2.99 7.97 -2.39 -0.02 2.97 16 29 H 0.06 2.88 3.22 -2.39 -0.01 2.87 16 30 H 0.01 0.54 7.97 -2.39 -0.02 0.52 16 31 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 32 H 0.12 4.76 2.17 -2.39 -0.01 4.76 16 33 H 0.07 2.08 7.82 -2.38 -0.02 2.06 16 34 H 0.06 2.09 5.50 -2.39 -0.01 2.08 16 35 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.09 2.12 4.69 -2.39 -0.01 2.11 16 37 H 0.07 2.81 3.86 -2.38 -0.01 2.80 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.81 7.47 -2.39 -0.02 1.79 16 41 H 0.05 1.65 5.47 -2.38 -0.01 1.63 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.89 4.69 -2.39 -0.01 1.88 16 45 H 0.04 1.57 7.74 -2.39 -0.02 1.55 16 46 H 0.06 1.96 7.82 -2.39 -0.02 1.95 16 Total: -1.00 -56.64 336.44 5.67 -50.97 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.97 Total: 30.52 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.48 Total: -22.04 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.76 Total: -75.05 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -56.64 5.67 -50.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292304105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.978 kcal (2) G-P(sol) polarization free energy of solvation -56.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds