Wall clock time and date at job start Tue Mar 31 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 120.00046 * 2 1 4 4 N 1.46496 * 109.46861 * 125.00134 * 3 2 1 5 5 C 1.46500 * 120.00332 * 270.00225 * 4 3 2 6 6 C 1.50698 * 109.47324 * 270.00032 * 5 4 3 7 7 H 1.08005 * 119.99623 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00186 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00117 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00242 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47168 * 89.99942 * 10 8 6 12 12 H 1.48493 * 109.47426 * 210.00031 * 10 8 6 13 13 H 1.48501 * 109.46994 * 330.00038 * 10 8 6 14 14 C 1.34777 * 119.99889 * 90.00436 * 4 3 2 15 15 O 1.21280 * 120.00184 * 179.97438 * 14 4 3 16 16 C 1.50699 * 119.99850 * 359.97438 * 14 4 3 17 17 C 1.52997 * 109.47339 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 1.07997 * 119.99855 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99913 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46490 * 5.00853 * 3 2 1 28 28 H 1.08995 * 109.47299 * 245.00930 * 3 2 1 29 29 H 1.08999 * 109.46820 * 30.00359 * 5 4 3 30 30 H 1.09008 * 109.47046 * 150.00114 * 5 4 3 31 31 H 0.97000 * 119.99968 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47531 * 59.99661 * 16 14 4 33 33 H 1.09006 * 109.47449 * 300.00162 * 16 14 4 34 34 H 1.09008 * 109.47149 * 59.99835 * 17 16 14 35 35 H 1.08997 * 109.47163 * 299.99905 * 17 16 14 36 36 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 37 37 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 38 38 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 41 41 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 42 42 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 43 43 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 45 45 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 46 46 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3434 2.4806 7 1 3.3041 3.8368 1.6369 8 6 2.5186 4.0664 3.6084 9 7 1.9593 3.4656 4.6359 10 14 2.8717 5.8995 3.6772 11 1 1.6988 6.6493 3.1603 12 1 3.1354 6.3004 5.0824 13 1 4.0618 6.2059 2.8434 14 6 4.2498 0.8662 0.9823 15 8 5.0201 0.8887 1.9188 16 6 4.6969 0.3175 -0.3481 17 6 6.1530 -0.1411 -0.2473 18 6 6.6069 -0.6988 -1.5979 19 6 6.6068 0.4226 -2.6387 20 6 7.0612 -0.1348 -3.9891 21 6 8.4741 -0.7066 -3.8555 22 6 8.4741 -1.8281 -2.8147 23 6 8.0196 -1.2709 -1.4647 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 1.4889 1.6964 2.5460 30 1 3.0992 1.3600 3.2260 31 1 1.7304 3.9742 5.4295 32 1 4.6119 1.0938 -1.1085 33 1 4.0677 -0.5296 -0.6219 34 1 6.2376 -0.9177 0.5130 35 1 6.7825 0.7055 0.0265 36 1 5.9237 -1.4874 -1.9134 37 1 5.6004 0.8303 -2.7336 38 1 7.2900 1.2112 -2.3231 39 1 7.0616 0.6642 -4.7305 40 1 6.3784 -0.9236 -4.3048 41 1 9.1569 0.0821 -3.5397 42 1 8.7976 -1.1042 -4.8175 43 1 9.4805 -2.2357 -2.7199 44 1 7.7912 -2.6168 -3.1305 45 1 8.7027 -0.4824 -1.1492 46 1 8.0196 -2.0699 -0.7233 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292560631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:21 Heat of formation + Delta-G solvation = -56.590999 kcal Electronic energy + Delta-G solvation = -22187.393246 eV Core-core repulsion = 19075.842551 eV Total energy + Delta-G solvation = -3111.550695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.39308 -38.48871 -35.64502 -33.80043 -33.07993 -32.01518 -30.87913 -29.53049 -27.42210 -25.45672 -24.41197 -22.78538 -22.26218 -20.69076 -19.89737 -19.75246 -18.21789 -16.51794 -16.30565 -15.50727 -15.37498 -15.14750 -14.53814 -14.37664 -14.23342 -14.06810 -13.88306 -13.40696 -12.82017 -12.66603 -12.47306 -12.22007 -11.99731 -11.76348 -11.59511 -11.53866 -11.22668 -11.18491 -11.10503 -10.99282 -10.86467 -10.66198 -10.56669 -10.44193 -10.17128 -10.06556 -9.95774 -9.60661 -9.16157 -8.80122 -8.40894 -7.63041 -6.01533 -4.06196 2.47186 3.31224 3.37838 3.41733 3.52231 4.06277 4.46586 4.58766 4.62780 4.67551 5.03854 5.09326 5.10989 5.25348 5.31765 5.32589 5.40764 5.41851 5.43285 5.45027 5.50961 5.55738 5.66554 5.68880 5.87239 5.89556 5.93276 5.99022 6.03385 6.06803 6.10149 6.16980 6.22556 6.24156 6.31830 6.47069 6.59340 6.81132 6.93917 7.13999 7.49343 7.60559 7.95385 8.27231 8.48199 8.93998 9.16754 9.58900 11.06543 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.003962 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.374392 B = 7066.210500 C = 7852.756110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.503 3.497 15 O -0.542 6.542 16 C -0.140 4.140 17 C -0.098 4.098 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 -9.763 -17.589 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.013 3.987 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.290 3.710 15 O -0.420 6.420 16 C -0.180 4.180 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.218 -9.693 -16.874 20.429 hybrid contribution -0.042 1.017 0.117 1.025 sum 6.175 -8.675 -16.756 19.854 Atomic orbital electron populations 1.23810 0.95868 1.01705 1.00850 1.23442 0.96365 0.99102 0.99662 1.20558 0.93098 0.95176 0.89869 1.48242 1.10681 1.60376 1.13433 1.19245 0.95287 0.93704 0.78999 1.21446 1.40336 0.93402 1.01217 0.92510 1.24935 0.95124 0.98722 0.95353 1.69939 1.42178 1.36102 1.05180 0.86510 0.78578 0.85077 0.77338 1.20667 1.21096 1.19905 1.20470 0.82161 0.78462 0.89909 1.90658 1.52565 1.56484 1.42298 1.21771 0.98016 1.01633 0.96626 1.21369 0.94626 1.01552 0.96065 1.21186 0.96552 0.97514 0.95177 1.21663 1.01523 0.97967 0.94386 1.21537 0.96553 1.00160 0.97416 1.21541 0.97276 0.98311 0.98615 1.21521 1.00832 0.97843 0.95431 1.21569 0.96535 1.00406 0.96740 0.88844 0.88321 0.87838 0.89637 0.90783 0.95132 0.93990 0.92767 0.89552 0.89926 0.91396 0.91251 0.91404 0.91709 0.91900 0.92303 0.92180 0.92099 0.92493 0.92354 0.92203 0.91912 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.01 0.42 -2.00 16 2 C -0.17 -2.38 9.74 -36.03 -0.35 -2.74 16 3 C 0.14 2.25 5.65 -5.19 -0.03 2.22 16 4 N -0.60 -12.76 2.44 -176.43 -0.43 -13.19 16 5 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 6 C -0.53 -15.10 9.38 -34.44 -0.32 -15.42 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 10 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.50 10.53 7.67 -10.99 -0.08 10.44 16 15 O -0.54 -13.85 15.56 5.56 0.09 -13.76 16 16 C -0.14 -2.06 4.01 -27.89 -0.11 -2.17 16 17 C -0.10 -1.36 3.97 -26.73 -0.11 -1.47 16 18 C -0.09 -0.91 2.19 -90.62 -0.20 -1.11 16 19 C -0.12 -1.18 4.96 -26.73 -0.13 -1.31 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 22 C -0.12 -1.01 5.92 -26.76 -0.16 -1.17 16 23 C -0.11 -1.14 5.20 -26.76 -0.14 -1.28 16 24 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 25 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 26 H 0.10 1.39 7.83 -52.49 -0.41 0.98 16 27 H 0.09 1.47 7.72 -51.93 -0.40 1.06 16 28 H 0.07 1.00 6.44 -51.93 -0.33 0.67 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.27 7.42 -51.92 -0.39 0.88 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.09 1.14 5.83 -51.93 -0.30 0.83 16 33 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 34 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 35 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -32.55 364.92 -9.24 -41.79 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.45 Total: -1.05 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.66 Total: -10.12 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.31 Total: -39.42 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.55 -9.24 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292560631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.806 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds