Wall clock time and date at job start Tue Mar 31 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99968 * 2 1 4 4 N 1.46507 * 109.46948 * 125.00431 * 3 2 1 5 5 C 1.46503 * 119.99797 * 270.00020 * 4 3 2 6 6 C 1.50701 * 109.47073 * 269.99876 * 5 4 3 7 7 H 1.07998 * 120.00300 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99557 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99969 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99638 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47142 * 59.99782 * 10 8 6 12 12 H 1.48505 * 109.47163 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47500 * 299.99638 * 10 8 6 14 14 C 1.34773 * 119.99953 * 90.00076 * 4 3 2 15 15 O 1.21280 * 120.00143 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00115 * 0.02562 * 14 4 3 17 17 C 1.52999 * 109.47279 * 179.97438 * 16 14 4 18 18 C 1.53003 * 109.47400 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 16 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.08005 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00319 * 179.97438 * 1 2 3 26 26 H 1.07992 * 120.00133 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47359 * 5.00721 * 3 2 1 28 28 H 1.09002 * 109.47624 * 244.99990 * 3 2 1 29 29 H 1.08998 * 109.47101 * 30.00435 * 5 4 3 30 30 H 1.09006 * 109.46551 * 149.99877 * 5 4 3 31 31 H 0.96999 * 119.99623 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47508 * 60.00079 * 16 14 4 33 33 H 1.09000 * 109.47087 * 299.99756 * 16 14 4 34 34 H 1.09001 * 109.47169 * 60.00300 * 17 16 14 35 35 H 1.09000 * 109.46864 * 299.99895 * 17 16 14 36 36 H 1.08995 * 109.46922 * 59.99869 * 18 17 16 37 37 H 1.09000 * 109.47141 * 299.99866 * 18 17 16 38 38 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 39 39 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 40 40 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 41 41 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 42 42 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 43 43 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 44 44 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 45 45 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 46 46 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6367 8 6 2.5194 4.0663 3.6089 9 7 1.9600 3.4654 4.6363 10 14 2.8726 5.8993 3.6776 11 1 2.1358 6.5865 2.5866 12 1 2.4318 6.4395 4.9888 13 1 4.3303 6.1292 3.5117 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8878 1.9190 16 6 4.6972 0.3184 -0.3484 17 6 6.1536 -0.1393 -0.2478 18 6 6.6078 -0.6959 -1.5987 19 6 8.0640 -1.1541 -1.4979 20 6 8.1808 -2.4438 -0.6468 21 6 9.4948 -3.0946 -1.1260 22 6 9.7577 -2.5629 -2.5457 23 6 8.5939 -1.6074 -2.8811 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9352 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4027 -0.9314 29 1 1.4888 1.6964 2.5460 30 1 3.0991 1.3600 3.2259 31 1 1.7311 3.9740 5.4299 32 1 4.6126 1.0954 -1.1082 33 1 4.0681 -0.5283 -0.6229 34 1 6.2388 -0.9162 0.5119 35 1 6.7825 0.7077 0.0265 36 1 6.5226 0.0806 -2.3588 37 1 5.9789 -1.5430 -1.8726 38 1 8.6891 -0.3620 -1.0855 39 1 7.3357 -3.1049 -0.8383 40 1 8.2414 -2.1980 0.4134 41 1 9.3883 -4.1792 -1.1473 42 1 10.3139 -2.8131 -0.4642 43 1 10.7040 -2.0226 -2.5729 44 1 9.7796 -3.3894 -3.2560 45 1 8.9552 -0.7511 -3.4505 46 1 7.8167 -2.1329 -3.4360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292583838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:34 Heat of formation + Delta-G solvation = -54.063418 kcal Electronic energy + Delta-G solvation = -21755.859123 eV Core-core repulsion = 18644.418031 eV Total energy + Delta-G solvation = -3111.441091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.19044 -38.43208 -35.67133 -34.20322 -33.11937 -32.01929 -30.09323 -28.81327 -27.64100 -25.76317 -25.10444 -22.85891 -21.34654 -20.31462 -19.96720 -19.85928 -18.20907 -16.51435 -16.27016 -15.88263 -15.55091 -15.32680 -14.96594 -14.53184 -14.17746 -14.00906 -13.49157 -13.27787 -12.90377 -12.57170 -12.48450 -12.24529 -11.76434 -11.62237 -11.44362 -11.34086 -11.24984 -11.18098 -11.01791 -10.88818 -10.71312 -10.64577 -10.59047 -10.55831 -10.44985 -10.28932 -10.15870 -9.62378 -9.16273 -8.80358 -8.40444 -7.63195 -6.01397 -4.06124 2.47204 3.33209 3.37587 3.40007 3.52075 4.05787 4.43629 4.47888 4.51440 4.59019 5.01363 5.10264 5.17877 5.23676 5.31536 5.32741 5.38781 5.41753 5.45283 5.51334 5.52660 5.59808 5.64418 5.72007 5.75567 5.86114 5.87516 5.92769 5.99798 6.03441 6.07884 6.09928 6.20923 6.23695 6.32519 6.46077 6.58552 6.81135 6.93950 7.13998 7.49257 7.60437 7.95403 8.27287 8.48114 8.93814 9.16571 9.58842 11.06672 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.003526 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.080443 B = 7939.491752 C = 8893.263250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.503 3.497 15 O -0.542 6.542 16 C -0.140 4.140 17 C -0.103 4.103 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.121 4.121 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -11.484 -16.123 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.013 3.987 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.290 3.710 15 O -0.420 6.420 16 C -0.180 4.180 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.427 -11.420 -15.408 20.566 hybrid contribution -0.002 1.001 0.105 1.006 sum 7.425 -10.419 -15.303 19.947 Atomic orbital electron populations 1.23809 0.95869 1.01710 1.00844 1.23437 0.96370 0.99104 0.99668 1.20564 0.93104 0.95176 0.89878 1.48248 1.10685 1.60365 1.13450 1.19241 0.95285 0.93682 0.78991 1.21412 1.40488 0.93418 1.01180 0.92559 1.24937 0.95098 0.98728 0.95353 1.69929 1.42068 1.36232 1.05182 0.86569 0.78825 0.84956 0.77122 1.20273 1.21191 1.20179 1.20458 0.82169 0.78463 0.89916 1.90659 1.52581 1.56452 1.42279 1.21735 0.98114 1.01562 0.96638 1.21335 0.94477 1.01519 0.96729 1.21608 0.95072 1.00428 0.97664 1.22163 0.96431 0.97362 0.95137 1.22455 0.97127 0.96398 0.99867 1.22141 0.98048 0.99887 0.96312 1.22125 0.98605 0.98803 0.96742 1.22423 0.97573 0.98686 0.97163 0.88317 0.88842 0.87836 0.89628 0.90749 0.95131 0.93996 0.92703 0.89753 0.89897 0.91324 0.91338 0.92066 0.92090 0.90578 0.91643 0.91416 0.92185 0.92051 0.92129 0.92223 0.91930 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.02 0.42 -2.00 16 2 C -0.17 -2.39 9.74 -36.03 -0.35 -2.74 16 3 C 0.14 2.24 5.65 -5.19 -0.03 2.21 16 4 N -0.60 -12.78 2.44 -176.43 -0.43 -13.21 16 5 C 0.25 6.60 5.16 -5.19 -0.03 6.57 16 6 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.50 10.53 7.67 -10.99 -0.08 10.45 16 15 O -0.54 -13.84 15.56 5.56 0.09 -13.75 16 16 C -0.14 -2.05 4.25 -27.89 -0.12 -2.17 16 17 C -0.10 -1.42 4.40 -26.73 -0.12 -1.53 16 18 C -0.11 -1.15 4.72 -26.73 -0.13 -1.28 16 19 C -0.09 -0.92 2.86 -88.59 -0.25 -1.17 16 20 C -0.12 -1.20 5.71 -25.03 -0.14 -1.34 16 21 C -0.13 -1.10 6.80 -25.61 -0.17 -1.27 16 22 C -0.13 -1.01 6.80 -25.62 -0.17 -1.19 16 23 C -0.12 -1.03 6.27 -25.07 -0.16 -1.19 16 24 H 0.10 1.28 7.84 -52.48 -0.41 0.87 16 25 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 26 H 0.10 1.39 7.83 -52.49 -0.41 0.98 16 27 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 28 H 0.07 1.01 6.44 -51.93 -0.33 0.67 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 33 H 0.08 1.04 7.78 -51.93 -0.40 0.63 16 34 H 0.07 1.02 7.61 -51.93 -0.40 0.63 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 40 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -32.60 370.84 -9.36 -41.96 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -8.56 Total: -0.97 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.76 Total: -10.44 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.31 Total: -39.46 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.60 -9.36 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292583838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.106 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds