Wall clock time and date at job start Tue Mar 31 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99968 * 2 1 4 4 N 1.46507 * 109.46948 * 125.00431 * 3 2 1 5 5 C 1.46503 * 119.99797 * 270.00020 * 4 3 2 6 6 C 1.50701 * 109.47073 * 269.99876 * 5 4 3 7 7 H 1.07998 * 120.00300 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99557 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99969 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99638 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47142 * 59.99782 * 10 8 6 12 12 H 1.48505 * 109.47163 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47500 * 299.99638 * 10 8 6 14 14 C 1.34773 * 119.99953 * 90.00076 * 4 3 2 15 15 O 1.21280 * 120.00143 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00115 * 0.02562 * 14 4 3 17 17 C 1.52999 * 109.47279 * 179.97438 * 16 14 4 18 18 C 1.53003 * 109.47400 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 16 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.08005 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00319 * 179.97438 * 1 2 3 26 26 H 1.07992 * 120.00133 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47359 * 5.00721 * 3 2 1 28 28 H 1.09002 * 109.47624 * 244.99990 * 3 2 1 29 29 H 1.08998 * 109.47101 * 30.00435 * 5 4 3 30 30 H 1.09006 * 109.46551 * 149.99877 * 5 4 3 31 31 H 0.96999 * 119.99623 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47508 * 60.00079 * 16 14 4 33 33 H 1.09000 * 109.47087 * 299.99756 * 16 14 4 34 34 H 1.09001 * 109.47169 * 60.00300 * 17 16 14 35 35 H 1.09000 * 109.46864 * 299.99895 * 17 16 14 36 36 H 1.08995 * 109.46922 * 59.99869 * 18 17 16 37 37 H 1.09000 * 109.47141 * 299.99866 * 18 17 16 38 38 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 39 39 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 40 40 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 41 41 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 42 42 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 43 43 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 44 44 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 45 45 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 46 46 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6367 8 6 2.5194 4.0663 3.6089 9 7 1.9600 3.4654 4.6363 10 14 2.8726 5.8993 3.6776 11 1 2.1358 6.5865 2.5866 12 1 2.4318 6.4395 4.9888 13 1 4.3303 6.1292 3.5117 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8878 1.9190 16 6 4.6972 0.3184 -0.3484 17 6 6.1536 -0.1393 -0.2478 18 6 6.6078 -0.6959 -1.5987 19 6 8.0640 -1.1541 -1.4979 20 6 8.1808 -2.4438 -0.6468 21 6 9.4948 -3.0946 -1.1260 22 6 9.7577 -2.5629 -2.5457 23 6 8.5939 -1.6074 -2.8811 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9352 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4027 -0.9314 29 1 1.4888 1.6964 2.5460 30 1 3.0991 1.3600 3.2259 31 1 1.7311 3.9740 5.4299 32 1 4.6126 1.0954 -1.1082 33 1 4.0681 -0.5283 -0.6229 34 1 6.2388 -0.9162 0.5119 35 1 6.7825 0.7077 0.0265 36 1 6.5226 0.0806 -2.3588 37 1 5.9789 -1.5430 -1.8726 38 1 8.6891 -0.3620 -1.0855 39 1 7.3357 -3.1049 -0.8383 40 1 8.2414 -2.1980 0.4134 41 1 9.3883 -4.1792 -1.1473 42 1 10.3139 -2.8131 -0.4642 43 1 10.7040 -2.0226 -2.5729 44 1 9.7796 -3.3894 -3.2560 45 1 8.9552 -0.7511 -3.4505 46 1 7.8167 -2.1329 -3.4360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292583838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:33 Heat of formation + Delta-G solvation = -71.309498 kcal Electronic energy + Delta-G solvation = -21756.606969 eV Core-core repulsion = 18644.418031 eV Total energy + Delta-G solvation = -3112.188937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.77700 -39.25832 -37.23598 -35.42055 -34.92923 -33.64619 -31.23162 -29.57901 -29.36825 -26.98783 -26.57242 -24.59247 -22.55137 -21.16321 -20.92460 -20.75751 -19.74710 -18.64209 -17.75772 -17.23940 -16.82648 -16.52053 -16.25388 -15.81754 -15.58123 -15.26879 -14.49025 -14.36606 -14.21866 -14.09272 -13.89963 -13.55064 -13.24537 -12.97065 -12.92983 -12.83690 -12.57670 -12.37028 -12.23671 -12.18292 -12.12232 -11.88643 -11.72231 -11.69420 -11.43639 -11.36049 -11.21768 -11.17979 -10.65484 -10.52616 -10.29607 -9.44464 -8.23019 -6.38330 1.34197 1.35916 1.39952 1.47347 1.88431 2.34754 2.54680 3.06181 3.63627 3.78640 3.79857 3.87449 4.08533 4.14289 4.18962 4.26372 4.41002 4.53921 4.54787 4.63893 4.68951 4.72105 4.80133 4.84547 4.86491 4.91801 4.96958 5.03035 5.06611 5.08971 5.13614 5.18625 5.23053 5.28632 5.35831 5.40697 5.47154 5.53008 5.57727 5.63795 5.72608 5.77334 5.98043 6.06369 6.69427 6.81604 7.27947 7.52076 8.84023 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.003526 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.080443 B = 7939.491752 C = 8893.263250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.182 4.182 3 C 0.133 3.867 4 N -0.602 5.602 5 C 0.264 3.736 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.491 3.509 15 O -0.601 6.601 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.096 4.096 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.116 4.116 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.018 0.982 30 H -0.007 1.007 31 H 0.267 0.733 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -11.591 -19.075 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.143 3.857 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.281 3.719 15 O -0.483 6.483 16 C -0.164 4.164 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.114 4.114 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.154 4.154 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.036 0.964 30 H 0.011 0.989 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.127 -11.540 -18.415 22.871 hybrid contribution 0.037 0.991 1.068 1.458 sum 7.164 -10.549 -17.347 21.529 Atomic orbital electron populations 1.24041 0.95623 1.02786 0.98603 1.23348 0.96752 0.98390 1.01613 1.20831 0.92659 0.96180 0.89219 1.48271 1.12031 1.59932 1.12945 1.18650 0.93626 0.92703 0.80770 1.21701 1.40654 0.94488 1.01438 0.92791 1.25894 0.94622 1.03926 0.94818 1.70056 1.42798 1.38257 1.05791 0.85458 0.78516 0.78830 0.77954 1.18301 1.20301 1.20314 1.21656 0.81208 0.77380 0.91680 1.90626 1.54110 1.58745 1.44835 1.21752 0.98695 1.03087 0.92858 1.21285 0.93755 1.00118 0.98475 1.21534 0.95388 1.01239 0.95497 1.22160 0.96130 0.96890 0.96262 1.22467 0.98097 0.96759 0.98848 1.22152 0.97166 1.00333 0.96801 1.22137 0.98585 0.99154 0.96348 1.22399 0.97877 0.99038 0.96039 0.88496 0.86557 0.86569 0.90836 0.87193 0.96353 0.98935 0.92402 0.87050 0.86672 0.93214 0.93856 0.90625 0.90409 0.91997 0.91199 0.93329 0.91381 0.92462 0.91952 0.91023 0.91337 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 14.32 67.78 0.97 -3.18 16 2 C -0.18 -4.84 9.74 25.65 0.25 -4.59 16 3 C 0.13 4.18 5.65 85.63 0.48 4.67 16 4 N -0.60 -26.13 2.44 -830.48 -2.03 -28.16 16 5 C 0.26 14.74 5.16 85.63 0.44 15.18 16 6 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 7 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 8 C 0.01 0.37 5.46 84.66 0.46 0.83 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 10 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 14 C 0.49 20.87 7.67 87.66 0.67 21.54 16 15 O -0.60 -32.35 15.56 -3.03 -0.05 -32.40 16 16 C -0.12 -3.41 4.25 29.85 0.13 -3.28 16 17 C -0.10 -2.66 4.40 30.60 0.13 -2.52 16 18 C -0.10 -1.84 4.72 30.59 0.14 -1.69 16 19 C -0.10 -1.79 2.86 -9.48 -0.03 -1.81 16 20 C -0.12 -2.39 5.71 31.70 0.18 -2.21 16 21 C -0.13 -2.06 6.80 31.32 0.21 -1.85 16 22 C -0.12 -1.76 6.80 31.32 0.21 -1.55 16 23 C -0.12 -1.69 6.27 31.67 0.20 -1.49 16 24 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 25 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 26 H 0.12 2.81 7.83 -2.91 -0.02 2.78 16 27 H 0.07 2.48 7.72 -2.39 -0.02 2.46 16 28 H 0.11 2.63 6.44 -2.39 -0.02 2.62 16 29 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 30 H -0.01 -0.49 7.42 -2.38 -0.02 -0.50 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 32 H 0.11 2.51 7.40 -2.39 -0.02 2.49 16 33 H 0.12 2.47 7.78 -2.39 -0.02 2.45 16 34 H 0.05 1.52 7.61 -2.39 -0.02 1.50 16 35 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.22 8.00 -2.39 -0.02 1.20 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.26 7.95 -2.39 -0.02 1.25 16 40 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 Total: -1.00 -74.75 370.84 5.84 -68.90 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.90 Total: 15.10 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.71 Total: -13.89 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.74 Total: -85.38 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.05 Total: -32.40 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.75 5.84 -68.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292583838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.409 kcal (2) G-P(sol) polarization free energy of solvation -74.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds