Wall clock time and date at job start Tue Mar 31 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00331 * 2 1 4 4 N 1.46500 * 109.47309 * 125.60713 * 3 2 1 5 5 C 1.46496 * 119.99932 * 274.53502 * 4 3 2 6 6 C 1.50705 * 109.47260 * 277.09593 * 5 4 3 7 7 H 1.08003 * 119.99439 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00258 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99902 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00152 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46820 * 89.99948 * 10 8 6 12 12 H 1.48493 * 109.47158 * 210.00220 * 10 8 6 13 13 H 1.48505 * 109.46680 * 330.00276 * 10 8 6 14 14 C 1.34775 * 119.99851 * 94.52729 * 4 3 2 15 15 O 1.21279 * 120.00220 * 356.91709 * 14 4 3 16 16 C 1.50697 * 119.99893 * 176.90915 * 14 4 3 17 17 C 1.53002 * 109.47018 * 69.64198 * 16 14 4 18 18 C 1.53002 * 109.47527 * 309.63794 * 16 14 4 19 19 C 1.53008 * 109.46915 * 189.64044 * 16 14 4 20 20 C 1.54267 * 110.48250 * 180.02562 * 19 16 14 21 21 C 1.53882 * 106.63742 * 217.73163 * 20 19 16 22 22 C 1.54265 * 106.59966 * 359.97438 * 21 20 19 23 23 C 1.54889 * 104.19539 * 23.60485 * 22 21 20 24 24 H 1.08001 * 119.99794 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00187 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99794 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46677 * 5.60964 * 3 2 1 28 28 H 1.08998 * 109.47151 * 245.61260 * 3 2 1 29 29 H 1.08999 * 109.47494 * 37.09913 * 5 4 3 30 30 H 1.09007 * 109.46779 * 157.09992 * 5 4 3 31 31 H 0.96998 * 120.00219 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46732 * 195.31418 * 17 16 14 33 33 H 1.09000 * 109.46798 * 315.31072 * 17 16 14 34 34 H 1.08995 * 109.47244 * 75.31483 * 17 16 14 35 35 H 1.09003 * 109.46707 * 321.17932 * 18 16 14 36 36 H 1.08994 * 109.46818 * 81.17499 * 18 16 14 37 37 H 1.09000 * 109.47114 * 201.18304 * 18 16 14 38 38 H 1.08997 * 110.53792 * 302.60840 * 19 16 14 39 39 H 1.09006 * 110.03197 * 98.42928 * 20 19 16 40 40 H 1.08995 * 110.03868 * 337.04393 * 20 19 16 41 41 H 1.09002 * 110.02610 * 119.26574 * 21 20 19 42 42 H 1.09001 * 110.03022 * 240.64261 * 21 20 19 43 43 H 1.08995 * 110.48729 * 142.28264 * 22 21 20 44 44 H 1.09003 * 110.48555 * 264.93212 * 22 21 20 45 45 H 1.09002 * 110.75333 * 80.37165 * 23 22 21 46 46 H 1.08995 * 110.75868 * 203.55588 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0042 1.3259 1.1230 5 6 2.5536 1.7588 2.4479 6 6 2.5857 3.2637 2.5226 7 1 2.9090 3.8399 1.6682 8 6 2.2023 3.9048 3.6814 9 7 1.8091 3.2031 4.7219 10 14 2.2414 5.7701 3.7737 11 1 0.9320 6.3149 3.3335 12 1 2.5077 6.1910 5.1726 13 1 3.3156 6.2870 2.8881 14 6 4.2841 0.9465 0.9370 15 8 4.6434 0.5350 -0.1457 16 6 5.2686 1.0339 2.0746 17 6 4.9216 -0.0167 3.1313 18 6 5.2022 2.4284 2.7007 19 6 6.6819 0.7788 1.5465 20 6 7.7100 0.8622 2.6937 21 6 8.9645 1.5380 2.1127 22 6 8.6559 1.8414 0.6320 23 6 7.1095 1.9047 0.5715 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3595 2.1311 0.1005 28 1 2.6128 1.4075 -0.9360 29 1 1.5357 1.4082 2.6181 30 1 3.2132 1.3431 3.2098 31 1 1.5398 3.6540 5.5373 32 1 5.4448 0.2147 4.0591 33 1 3.8463 -0.0113 3.3095 34 1 5.2265 -1.0017 2.7781 35 1 5.0732 3.1734 1.9155 36 1 4.3594 2.4773 3.3900 37 1 6.1269 2.6279 3.2424 38 1 6.7370 -0.1926 1.0553 39 1 7.9556 -0.1388 3.0485 40 1 7.3089 1.4602 3.5119 41 1 9.1716 2.4643 2.6485 42 1 9.8190 0.8653 2.1864 43 1 9.0885 2.7985 0.3405 44 1 9.0302 1.0419 -0.0073 45 1 6.7486 2.8729 0.9187 46 1 6.7537 1.7011 -0.4384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293640562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:39 Heat of formation + Delta-G solvation = -23.283778 kcal Electronic energy + Delta-G solvation = -23875.010130 eV Core-core repulsion = 20764.903744 eV Total energy + Delta-G solvation = -3110.106386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.16771 -37.67768 -35.45766 -34.43587 -32.87735 -31.99109 -28.48674 -27.89075 -27.22623 -26.33881 -25.62826 -23.22094 -22.03220 -20.27509 -19.85180 -18.93194 -17.62966 -16.59552 -16.03240 -15.74143 -15.21315 -14.66760 -14.48881 -14.36030 -14.09872 -13.35635 -13.19801 -13.05876 -12.74471 -12.55181 -12.17968 -11.89786 -11.52942 -11.43635 -11.33578 -11.04428 -10.92709 -10.85825 -10.80989 -10.79723 -10.64309 -10.58700 -10.34795 -10.20032 -10.00049 -9.81741 -9.66849 -9.37965 -9.10683 -8.67761 -8.46206 -7.67523 -6.18053 -4.21122 2.61808 3.21630 3.29661 3.32245 3.50579 4.09956 4.33795 4.88593 4.96700 5.04585 5.14383 5.32373 5.43183 5.50124 5.60031 5.63106 5.75817 5.86312 5.92914 5.96033 5.97926 6.05030 6.11573 6.19223 6.20002 6.22612 6.25824 6.37830 6.40554 6.46196 6.56851 6.59940 6.67225 6.76275 6.82639 6.90259 6.95359 6.97326 7.11408 7.24068 7.51727 7.66305 7.76304 8.06596 8.42764 8.80018 9.09555 9.41996 10.88168 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.007726 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.717705 B = 3623.412519 C = 5037.010294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C 0.142 3.858 4 N -0.590 5.590 5 C 0.218 3.782 6 C -0.525 4.525 7 H 0.061 0.939 8 C 0.064 3.936 9 N -0.891 5.891 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.525 3.475 15 O -0.574 6.574 16 C -0.066 4.066 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.061 4.061 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.265 0.735 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -4.135 -3.331 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C 0.019 3.981 4 N -0.319 5.319 5 C 0.098 3.902 6 C -0.564 4.564 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.314 3.686 15 O -0.455 6.455 16 C -0.069 4.069 17 C -0.203 4.203 18 C -0.210 4.210 19 C -0.080 4.080 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.134 0.866 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.789 -4.306 -3.674 8.840 hybrid contribution -0.180 1.053 0.207 1.088 sum 6.610 -3.254 -3.467 8.142 Atomic orbital electron populations 1.23751 0.95808 1.01459 1.02167 1.23378 0.96025 0.99328 0.98478 1.20391 0.92210 0.94606 0.90886 1.48155 1.08341 1.63406 1.12022 1.20010 0.96618 0.95180 0.78357 1.21431 1.44467 0.91461 0.99058 0.92118 1.24870 0.95141 0.98283 0.95566 1.69911 1.44114 1.35517 1.03418 0.86605 0.78556 0.85655 0.77398 1.20654 1.21107 1.19742 1.20516 0.82794 0.76299 0.89009 1.90552 1.78906 1.48540 1.27526 1.20610 0.93287 0.98718 0.94282 1.22065 1.03164 0.97116 0.97979 1.22626 1.03311 0.92801 1.02265 1.21759 0.92060 0.99226 0.94990 1.22335 0.94927 1.00283 0.98681 1.22111 0.97640 1.00038 0.96186 1.22345 0.97019 1.00616 0.96192 1.22611 0.93983 0.99000 1.00139 0.88480 0.89026 0.88008 0.90095 0.90250 0.95231 0.91736 0.92554 0.91808 0.90647 0.93303 0.92488 0.86650 0.93762 0.90915 0.92439 0.90749 0.92225 0.92589 0.92345 0.92210 0.91246 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 14.32 29.01 0.42 -2.50 16 2 C -0.15 -2.61 9.84 -36.03 -0.35 -2.96 16 3 C 0.14 2.70 5.88 -5.19 -0.03 2.67 16 4 N -0.59 -12.30 2.44 -176.43 -0.43 -12.73 16 5 C 0.22 4.96 4.21 -5.19 -0.02 4.94 16 6 C -0.53 -12.89 6.21 -34.44 -0.21 -13.10 16 7 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 8 C 0.06 1.61 5.21 -17.82 -0.09 1.52 16 9 N -0.89 -23.49 13.29 55.43 0.74 -22.75 16 10 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.53 10.83 6.03 -10.99 -0.07 10.76 16 15 O -0.57 -12.75 14.36 5.56 0.08 -12.67 16 16 C -0.07 -1.20 0.30 -155.66 -0.05 -1.24 16 17 C -0.15 -2.47 7.57 37.16 0.28 -2.19 16 18 C -0.15 -2.95 5.67 37.16 0.21 -2.74 16 19 C -0.06 -1.00 1.74 -88.92 -0.15 -1.16 16 20 C -0.12 -1.73 5.28 -25.61 -0.14 -1.86 16 21 C -0.12 -1.52 6.80 -25.61 -0.17 -1.70 16 22 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 23 C -0.12 -1.94 5.54 -24.70 -0.14 -2.08 16 24 H 0.10 1.42 7.84 -52.49 -0.41 1.01 16 25 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 28 H 0.08 1.52 7.33 -51.93 -0.38 1.14 16 29 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.07 1.48 2.83 -51.92 -0.15 1.33 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.06 0.98 7.57 -51.93 -0.39 0.59 16 33 H 0.07 1.39 5.42 -51.93 -0.28 1.11 16 34 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.06 1.18 6.41 -51.93 -0.33 0.84 16 36 H 0.12 2.53 3.92 -51.93 -0.20 2.33 16 37 H 0.04 0.76 5.72 -51.93 -0.30 0.47 16 38 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.06 5.54 -51.93 -0.29 0.77 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.18 6.15 -51.93 -0.32 0.86 16 46 H 0.07 1.26 7.29 -51.93 -0.38 0.88 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -26.37 343.06 -7.74 -34.11 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.58 Total: 7.34 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.69 Total: -13.45 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.31 Total: -35.48 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.37 -7.74 -34.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293640562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.826 kcal (2) G-P(sol) polarization free energy of solvation -26.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds