Wall clock time and date at job start Tue Mar 31 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50694 * 120.00168 * 2 1 4 4 N 1.46506 * 109.47361 * 125.89404 * 3 2 1 5 5 C 1.46504 * 119.99667 * 281.44885 * 4 3 2 6 6 C 1.50697 * 109.46714 * 269.99294 * 5 4 3 7 7 H 1.08000 * 120.00611 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99945 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99724 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00225 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47267 * 90.00087 * 10 8 6 12 12 H 1.48503 * 109.47326 * 209.99772 * 10 8 6 13 13 H 1.48498 * 109.47054 * 329.99824 * 10 8 6 14 14 C 1.34772 * 119.99711 * 101.44233 * 4 3 2 15 15 O 1.21282 * 119.99669 * 178.60304 * 14 4 3 16 16 C 1.50699 * 120.00530 * 358.60446 * 14 4 3 17 17 C 1.53001 * 112.84707 * 68.65440 * 16 14 4 18 18 C 1.52997 * 109.47033 * 49.35136 * 17 16 14 19 19 C 1.53001 * 109.47196 * 186.35430 * 18 17 16 20 20 C 1.53002 * 109.47238 * 66.35635 * 18 17 16 21 21 C 1.53779 * 113.69194 * 199.92482 * 16 14 4 22 22 C 1.53777 * 87.08259 * 89.12703 * 21 16 14 23 23 C 1.53780 * 113.61359 * 297.46003 * 16 14 4 24 24 H 1.07998 * 119.99579 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00048 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99579 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47294 * 5.89467 * 3 2 1 28 28 H 1.08996 * 109.47574 * 245.89473 * 3 2 1 29 29 H 1.08992 * 109.47397 * 29.99809 * 5 4 3 30 30 H 1.08997 * 109.46487 * 149.99749 * 5 4 3 31 31 H 0.97003 * 119.99378 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.47347 * 289.35234 * 17 16 14 33 33 H 1.08994 * 109.46917 * 169.35152 * 17 16 14 34 34 H 1.09000 * 109.47640 * 306.35436 * 18 17 16 35 35 H 1.09004 * 109.47256 * 300.00263 * 19 18 17 36 36 H 1.09007 * 109.46755 * 60.00006 * 19 18 17 37 37 H 1.08993 * 109.47536 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47412 * 179.97438 * 20 18 17 39 39 H 1.08995 * 109.46927 * 300.00028 * 20 18 17 40 40 H 1.09004 * 109.46951 * 59.99899 * 20 18 17 41 41 H 1.08996 * 113.61166 * 203.67594 * 21 16 14 42 42 H 1.09001 * 113.61480 * 334.57499 * 21 16 14 43 43 H 1.09005 * 113.61287 * 270.88540 * 22 21 16 44 44 H 1.09000 * 113.61806 * 139.98198 * 22 21 16 45 45 H 1.08999 * 113.61103 * 25.34691 * 23 16 14 46 46 H 1.08995 * 113.61460 * 156.25042 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0091 1.3231 1.1190 5 6 2.5333 1.6056 2.4755 6 6 2.5932 3.0897 2.7298 7 1 2.9497 3.7560 1.9581 8 6 2.1931 3.5971 3.9478 9 7 1.7595 2.7858 4.8877 10 14 2.2667 5.4369 4.2629 11 1 0.9801 6.0599 3.8608 12 1 2.5052 5.6825 5.7079 13 1 3.3733 6.0309 3.4705 14 6 4.3165 1.0797 0.9003 15 8 5.1032 1.1196 1.8225 16 6 4.8010 0.7579 -0.4899 17 6 4.7125 1.9529 -1.4412 18 6 5.3457 3.1789 -0.7803 19 6 5.1175 4.4085 -1.6618 20 6 6.8481 2.9466 -0.6081 21 6 6.1638 0.0461 -0.5201 22 6 5.3862 -1.2774 -0.4275 23 6 4.2012 -0.5350 -1.0674 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3600 2.1308 0.1055 28 1 2.6087 1.4099 -0.9380 29 1 1.5046 1.2604 2.5790 30 1 3.1648 1.0875 3.1971 31 1 1.4776 3.1429 5.7444 32 1 3.6666 2.1613 -1.6667 33 1 5.2442 1.7225 -2.3644 34 1 4.8890 3.3420 0.1959 35 1 5.5742 4.2455 -2.6381 36 1 4.0471 4.5740 -1.7845 37 1 5.5682 5.2820 -1.1908 38 1 7.2993 3.8202 -0.1376 39 1 7.0106 2.0707 0.0199 40 1 7.3048 2.7836 -1.5843 41 1 6.7013 0.1718 -1.4599 42 1 6.7828 0.2509 0.3534 43 1 5.1968 -1.6019 0.5958 44 1 5.7955 -2.0692 -1.0548 45 1 3.2358 -0.7992 -0.6358 46 1 4.2022 -0.5681 -2.1569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293708064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:49 Heat of formation + Delta-G solvation = -18.692805 kcal Electronic energy + Delta-G solvation = -23918.620527 eV Core-core repulsion = 20808.713221 eV Total energy + Delta-G solvation = -3109.907306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.05325 -38.62143 -37.27030 -36.43767 -35.07831 -33.65813 -30.50509 -29.05238 -28.22497 -27.00619 -26.30655 -25.56461 -24.06507 -21.98323 -21.10769 -20.64828 -19.14549 -18.58495 -17.57646 -17.28934 -16.76175 -16.53648 -15.74292 -15.67032 -15.39698 -15.06669 -14.67770 -14.45138 -14.13398 -14.04512 -13.53465 -13.34768 -13.29654 -13.03182 -12.98747 -12.94253 -12.73980 -12.63405 -12.52400 -12.30990 -12.25638 -12.15561 -11.75801 -11.72310 -11.50985 -11.42078 -10.96373 -10.73276 -10.65981 -10.36464 -10.24768 -9.42305 -8.23757 -6.37850 1.31423 1.34018 1.34956 1.45226 1.91224 2.32579 2.51715 3.05318 3.51526 3.58611 3.74139 3.90535 4.01066 4.07572 4.09609 4.18736 4.25127 4.37090 4.39236 4.63371 4.73816 4.81573 4.83646 4.87933 4.89544 4.91801 4.99137 5.02716 5.03839 5.08304 5.10850 5.13144 5.20788 5.26656 5.31827 5.40245 5.49593 5.52711 5.55899 5.59538 5.74489 5.76760 5.98522 6.06717 6.69973 6.84909 7.28097 7.55577 8.83338 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.007251 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.368071 B = 3860.757922 C = 4729.094283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.186 4.186 3 C 0.122 3.878 4 N -0.595 5.595 5 C 0.267 3.733 6 C -0.535 4.535 7 H 0.050 0.950 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.528 3.472 15 O -0.598 6.598 16 C -0.106 4.106 17 C -0.091 4.091 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.143 4.143 23 C -0.131 4.131 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.018 0.982 30 H -0.010 1.010 31 H 0.266 0.734 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -4.689 -19.666 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.204 4.204 3 C 0.001 3.999 4 N -0.324 5.324 5 C 0.146 3.854 6 C -0.574 4.574 7 H 0.068 0.932 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.200 1.200 14 C 0.318 3.682 15 O -0.479 6.479 16 C -0.109 4.109 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.195 4.195 20 C -0.203 4.203 21 C -0.150 4.150 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.036 0.964 30 H 0.009 0.991 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.138 0.862 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.355 -4.655 -18.992 19.840 hybrid contribution -0.133 0.998 1.553 1.851 sum 3.221 -3.657 -17.439 18.107 Atomic orbital electron populations 1.24047 0.95533 1.02813 0.98375 1.23459 0.96685 0.98413 1.01876 1.21128 0.92488 0.95932 0.90369 1.48084 1.07268 1.67895 1.09164 1.18604 0.93054 0.94755 0.79004 1.21647 1.43009 0.93201 0.99536 0.93156 1.25834 0.94699 1.03055 0.95531 1.70062 1.44431 1.36725 1.05595 0.85482 0.78903 0.79460 0.77403 1.18615 1.20550 1.19975 1.20675 0.81509 0.75275 0.90769 1.90607 1.55404 1.54562 1.47333 1.21988 1.00104 0.97680 0.91158 1.21805 1.01952 0.91355 0.97681 1.21123 0.96850 0.96428 0.97998 1.21769 1.01635 0.96152 0.99959 1.21932 0.94921 1.01082 1.02367 1.22984 0.94404 0.94761 1.02825 1.22800 0.97691 0.97531 1.00063 1.23447 0.98793 0.91891 1.02637 0.88484 0.86463 0.86244 0.91551 0.86265 0.96354 0.99148 0.92483 0.90332 0.87161 0.96006 0.90050 0.92831 0.93790 0.94467 0.93211 0.89994 0.86198 0.93373 0.93654 0.88391 0.90397 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 14.32 67.77 0.97 -3.33 16 2 C -0.19 -5.26 8.69 25.64 0.22 -5.04 16 3 C 0.12 4.05 5.25 85.63 0.45 4.50 16 4 N -0.59 -26.29 2.46 -830.52 -2.05 -28.34 16 5 C 0.27 15.06 5.12 85.63 0.44 15.50 16 6 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 10 Si 0.96 46.37 29.54 68.60 2.03 48.40 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 14 C 0.53 22.77 4.76 87.66 0.42 23.19 16 15 O -0.60 -32.47 15.58 -3.04 -0.05 -32.52 16 16 C -0.11 -3.06 0.16 -52.40 -0.01 -3.07 16 17 C -0.09 -2.16 3.95 30.59 0.12 -2.04 16 18 C -0.11 -3.13 2.68 -10.79 -0.03 -3.15 16 19 C -0.14 -3.29 9.19 71.98 0.66 -2.62 16 20 C -0.15 -4.07 8.59 71.98 0.62 -3.45 16 21 C -0.11 -2.92 5.08 31.12 0.16 -2.77 16 22 C -0.14 -3.46 7.80 31.12 0.24 -3.22 16 23 C -0.13 -2.86 6.23 31.12 0.19 -2.67 16 24 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 25 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 26 H 0.12 3.18 5.84 -2.91 -0.02 3.16 16 27 H 0.07 2.34 7.80 -2.39 -0.02 2.32 16 28 H 0.12 3.15 3.29 -2.39 -0.01 3.14 16 29 H 0.02 1.06 8.02 -2.39 -0.02 1.04 16 30 H -0.01 -0.63 7.44 -2.39 -0.02 -0.65 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.08 1.75 5.54 -2.39 -0.01 1.74 16 33 H 0.11 1.77 7.95 -2.39 -0.02 1.75 16 34 H 0.02 0.90 6.89 -2.39 -0.02 0.88 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 1.60 5.10 -2.39 -0.01 1.59 16 40 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.12 2.20 7.97 -2.39 -0.02 2.18 16 42 H 0.05 1.60 6.35 -2.39 -0.02 1.59 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 1.86 3.69 -2.39 -0.01 1.85 16 46 H 0.13 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -76.70 351.84 6.32 -70.38 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.94 Total: 18.53 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 5.16 Total: -18.97 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.76 Total: -85.82 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.05 Total: -32.52 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.70 6.32 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293708064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.687 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds