Wall clock time and date at job start Tue Mar 31 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00293 * 2 1 4 4 N 1.46506 * 109.46667 * 125.00372 * 3 2 1 5 5 C 1.46497 * 120.00062 * 265.90885 * 4 3 2 6 6 C 1.50706 * 109.47349 * 264.68073 * 5 4 3 7 7 H 1.08002 * 119.99650 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99937 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99767 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00278 * 0.02562 * 8 6 5 11 11 H 1.48490 * 109.47287 * 89.99760 * 10 8 6 12 12 H 1.48497 * 109.47070 * 209.99895 * 10 8 6 13 13 H 1.48501 * 109.47050 * 329.99695 * 10 8 6 14 14 C 1.34776 * 119.99843 * 85.91144 * 4 3 2 15 15 O 1.21285 * 119.99870 * 6.32292 * 14 4 3 16 16 C 1.50694 * 119.99803 * 186.31872 * 14 4 3 17 17 H 1.08998 * 109.47543 * 310.77620 * 16 14 4 18 18 C 1.53001 * 109.47026 * 70.78152 * 16 14 4 19 19 C 1.53001 * 109.47445 * 59.99445 * 18 16 14 20 20 C 1.53000 * 109.46904 * 60.00437 * 19 18 16 21 21 C 1.52998 * 109.46980 * 299.99766 * 20 19 18 22 22 C 1.53001 * 109.47111 * 60.00361 * 21 20 19 23 23 H 1.09004 * 109.47488 * 59.99736 * 22 21 20 24 24 C 1.53001 * 109.47445 * 180.02562 * 22 21 20 25 25 C 1.53006 * 109.46645 * 294.99994 * 24 22 21 26 26 H 1.08007 * 119.99846 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00515 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99498 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47112 * 5.00897 * 3 2 1 30 30 H 1.08992 * 109.47229 * 245.00621 * 3 2 1 31 31 H 1.09005 * 109.47404 * 24.68153 * 5 4 3 32 32 H 1.08997 * 109.47387 * 144.67823 * 5 4 3 33 33 H 0.96998 * 119.99566 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47024 * 299.99598 * 18 16 14 35 35 H 1.09004 * 109.47094 * 180.02562 * 18 16 14 36 36 H 1.08995 * 109.46823 * 180.02562 * 19 18 16 37 37 H 1.08993 * 109.46980 * 300.00439 * 19 18 16 38 38 H 1.09004 * 109.47089 * 59.99706 * 20 19 18 39 39 H 1.08998 * 109.46874 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47457 * 300.00336 * 21 20 19 41 41 H 1.08998 * 109.47580 * 179.97438 * 21 20 19 42 42 H 1.08991 * 109.47096 * 54.99555 * 24 22 21 43 43 H 1.08997 * 109.47127 * 175.00340 * 24 22 21 44 44 H 1.09001 * 109.47166 * 299.99582 * 25 24 22 45 45 H 1.08995 * 109.47446 * 59.99940 * 25 24 22 46 46 H 1.08999 * 109.46872 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3316 1.1315 5 6 2.5891 1.9458 2.3984 6 6 3.0711 3.3731 2.4414 7 1 3.6234 3.7818 1.6082 8 6 2.8061 4.1572 3.5441 9 7 3.2264 5.4029 3.5814 10 14 1.8503 3.4504 4.9850 11 1 2.7953 2.8411 5.9548 12 1 1.0869 4.5352 5.6525 13 1 0.9085 2.4129 4.4930 14 6 4.2222 0.7911 1.0067 15 8 4.5998 0.3862 -0.0724 16 6 5.1264 0.6900 2.2080 17 1 5.1635 1.6531 2.7170 18 6 4.5845 -0.3727 3.1661 19 6 4.5325 -1.7247 2.4517 20 6 5.9403 -2.1167 1.9988 21 6 6.4822 -1.0541 1.0406 22 6 6.5343 0.2979 1.7551 23 1 7.1883 0.2247 2.6241 24 6 7.0755 1.3607 0.7968 25 6 8.5275 1.0346 0.4411 26 1 -0.5400 0.9354 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6212 1.4026 -0.9314 31 1 1.5023 1.9268 2.4805 32 1 3.0259 1.3896 3.2277 33 1 3.0396 5.9546 4.3570 34 1 3.5815 -0.0935 3.4888 35 1 5.2383 -0.4456 4.0353 36 1 4.1460 -2.4816 3.1341 37 1 3.8785 -1.6515 1.5828 38 1 6.5943 -2.1898 2.8677 39 1 5.9031 -3.0796 1.4894 40 1 5.8282 -0.9808 0.1718 41 1 7.4853 -1.3330 0.7183 42 1 6.4728 1.3720 -0.1112 43 1 7.0296 2.3388 1.2756 44 1 9.1303 1.0234 1.3492 45 1 8.5735 0.0565 -0.0376 46 1 8.9130 1.7915 -0.2419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294015799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:42 Heat of formation + Delta-G solvation = -37.120271 kcal Electronic energy + Delta-G solvation = -23917.355645 eV Core-core repulsion = 20806.649264 eV Total energy + Delta-G solvation = -3110.706381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.33942 -37.28649 -35.40107 -33.72991 -33.40406 -32.23368 -30.60420 -28.65504 -28.14026 -25.78603 -23.50279 -23.11517 -21.97514 -20.47263 -20.30111 -19.52518 -17.80951 -17.05486 -16.17204 -15.61458 -15.15473 -14.81615 -14.38185 -14.15385 -14.04967 -13.59573 -13.42651 -13.03929 -12.92324 -12.71219 -12.45398 -12.35343 -11.99279 -11.82105 -11.42828 -11.33687 -11.14821 -11.09351 -11.01672 -10.86887 -10.73507 -10.57995 -10.38124 -10.25882 -10.16249 -9.67557 -9.58329 -9.50108 -9.20288 -8.74070 -8.50966 -7.72213 -6.22334 -4.23508 2.46839 3.16047 3.24358 3.25754 3.40772 3.98994 4.25535 4.95081 5.03519 5.06387 5.11829 5.26509 5.39081 5.44699 5.49753 5.53783 5.58845 5.70579 5.82973 5.85010 5.89650 5.98168 6.00229 6.05229 6.09553 6.22244 6.25485 6.26619 6.28950 6.35112 6.47648 6.51335 6.53017 6.58359 6.59607 6.74398 6.81967 6.84022 6.88302 6.95208 7.06913 7.42536 7.44585 8.18348 8.41730 8.83152 9.01666 9.37325 10.90304 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.007547 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.861352 B = 3709.052786 C = 4519.135749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.142 3.858 4 N -0.589 5.589 5 C 0.203 3.797 6 C -0.540 4.540 7 H 0.078 0.922 8 C 0.077 3.923 9 N -0.890 5.890 10 Si 0.868 3.132 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.535 3.465 15 O -0.560 6.560 16 C -0.105 4.105 17 H 0.110 0.890 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.135 4.135 22 C -0.059 4.059 23 H 0.064 0.936 24 C -0.129 4.129 25 C -0.146 4.146 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.105 0.895 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -12.232 -2.145 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C 0.019 3.981 4 N -0.318 5.318 5 C 0.082 3.918 6 C -0.578 4.578 7 H 0.096 0.904 8 C -0.127 4.127 9 N -0.528 5.528 10 Si 0.694 3.306 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.325 3.675 15 O -0.441 6.441 16 C -0.126 4.126 17 H 0.128 0.872 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.172 4.172 22 C -0.078 4.078 23 H 0.082 0.918 24 C -0.166 4.166 25 C -0.204 4.204 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.207 -12.237 -2.571 12.698 hybrid contribution -0.612 -0.054 1.077 1.240 sum 1.596 -12.291 -1.494 12.484 Atomic orbital electron populations 1.23776 0.95807 1.01540 1.02242 1.23421 0.96034 0.99414 0.98399 1.20416 0.92266 0.94483 0.90936 1.47910 1.13194 1.56487 1.14227 1.19970 0.96260 0.94174 0.81367 1.21400 1.36975 0.94488 1.04940 0.90403 1.24865 0.95136 0.94639 0.98035 1.69896 1.45582 1.07055 1.30250 0.86976 0.80940 0.79405 0.83285 1.19740 1.20878 1.18838 1.20344 0.81458 0.75971 0.89761 1.90424 1.74065 1.50628 1.29031 1.21367 0.94440 1.01603 0.95233 0.87218 1.21618 1.01873 0.94001 0.97602 1.21545 0.97445 0.96662 1.00011 1.21497 0.96264 0.98354 0.99080 1.22043 1.01282 0.93301 1.00534 1.20880 0.93959 0.95354 0.97611 0.91773 1.21701 0.95880 0.98107 1.00937 1.21769 0.96959 1.01030 1.00607 0.88477 0.88921 0.87831 0.89963 0.89956 0.95025 0.94537 0.92384 0.90888 0.91359 0.92600 0.92103 0.92848 0.92874 0.87730 0.93110 0.90027 0.92308 0.93485 0.92889 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 14.32 29.01 0.42 -2.23 16 2 C -0.15 -2.38 9.82 -36.03 -0.35 -2.74 16 3 C 0.14 2.54 5.83 -5.19 -0.03 2.51 16 4 N -0.59 -11.78 2.46 -176.43 -0.43 -12.21 16 5 C 0.20 4.44 3.78 -5.19 -0.02 4.42 16 6 C -0.54 -14.07 9.33 -34.44 -0.32 -14.39 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 10 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 14 C 0.54 10.44 5.01 -10.99 -0.05 10.38 16 15 O -0.56 -11.40 11.11 5.55 0.06 -11.33 16 16 C -0.11 -1.88 1.71 -91.77 -0.16 -2.04 16 17 H 0.11 2.22 7.07 -51.93 -0.37 1.85 16 18 C -0.11 -1.78 5.15 -26.73 -0.14 -1.92 16 19 C -0.12 -1.70 5.70 -26.73 -0.15 -1.85 16 20 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 21 C -0.13 -2.01 4.69 -26.73 -0.13 -2.14 16 22 C -0.06 -0.94 1.93 -90.62 -0.18 -1.12 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 C -0.13 -2.14 5.03 -26.73 -0.13 -2.27 16 25 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 26 H 0.10 1.27 7.84 -52.48 -0.41 0.85 16 27 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 30 H 0.08 1.50 7.47 -51.93 -0.39 1.12 16 31 H 0.03 0.69 7.09 -51.93 -0.37 0.33 16 32 H 0.04 0.77 3.91 -51.93 -0.20 0.57 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.20 5.70 -51.93 -0.30 0.91 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.97 7.22 -51.93 -0.37 0.59 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.82 5.14 -51.93 -0.27 1.56 16 41 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 42 H 0.08 1.53 6.04 -51.93 -0.31 1.22 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.69 6.57 -51.93 -0.34 0.35 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -27.78 345.04 -8.10 -35.88 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.89 Total: 7.15 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.14 Total: -14.75 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.34 Total: -37.16 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.06 Total: -11.33 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.78 -8.10 -35.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.236 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds