Wall clock time and date at job start Tue Mar 31 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00293 * 2 1 4 4 N 1.46506 * 109.46667 * 125.00372 * 3 2 1 5 5 C 1.46497 * 120.00062 * 265.90885 * 4 3 2 6 6 C 1.50706 * 109.47349 * 264.68073 * 5 4 3 7 7 H 1.08002 * 119.99650 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99937 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99767 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00278 * 0.02562 * 8 6 5 11 11 H 1.48490 * 109.47287 * 89.99760 * 10 8 6 12 12 H 1.48497 * 109.47070 * 209.99895 * 10 8 6 13 13 H 1.48501 * 109.47050 * 329.99695 * 10 8 6 14 14 C 1.34776 * 119.99843 * 85.91144 * 4 3 2 15 15 O 1.21285 * 119.99870 * 6.32292 * 14 4 3 16 16 C 1.50694 * 119.99803 * 186.31872 * 14 4 3 17 17 H 1.08998 * 109.47543 * 310.77620 * 16 14 4 18 18 C 1.53001 * 109.47026 * 70.78152 * 16 14 4 19 19 C 1.53001 * 109.47445 * 59.99445 * 18 16 14 20 20 C 1.53000 * 109.46904 * 60.00437 * 19 18 16 21 21 C 1.52998 * 109.46980 * 299.99766 * 20 19 18 22 22 C 1.53001 * 109.47111 * 60.00361 * 21 20 19 23 23 H 1.09004 * 109.47488 * 59.99736 * 22 21 20 24 24 C 1.53001 * 109.47445 * 180.02562 * 22 21 20 25 25 C 1.53006 * 109.46645 * 294.99994 * 24 22 21 26 26 H 1.08007 * 119.99846 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00515 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99498 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47112 * 5.00897 * 3 2 1 30 30 H 1.08992 * 109.47229 * 245.00621 * 3 2 1 31 31 H 1.09005 * 109.47404 * 24.68153 * 5 4 3 32 32 H 1.08997 * 109.47387 * 144.67823 * 5 4 3 33 33 H 0.96998 * 119.99566 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47024 * 299.99598 * 18 16 14 35 35 H 1.09004 * 109.47094 * 180.02562 * 18 16 14 36 36 H 1.08995 * 109.46823 * 180.02562 * 19 18 16 37 37 H 1.08993 * 109.46980 * 300.00439 * 19 18 16 38 38 H 1.09004 * 109.47089 * 59.99706 * 20 19 18 39 39 H 1.08998 * 109.46874 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47457 * 300.00336 * 21 20 19 41 41 H 1.08998 * 109.47580 * 179.97438 * 21 20 19 42 42 H 1.08991 * 109.47096 * 54.99555 * 24 22 21 43 43 H 1.08997 * 109.47127 * 175.00340 * 24 22 21 44 44 H 1.09001 * 109.47166 * 299.99582 * 25 24 22 45 45 H 1.08995 * 109.47446 * 59.99940 * 25 24 22 46 46 H 1.08999 * 109.46872 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3316 1.1315 5 6 2.5891 1.9458 2.3984 6 6 3.0711 3.3731 2.4414 7 1 3.6234 3.7818 1.6082 8 6 2.8061 4.1572 3.5441 9 7 3.2264 5.4029 3.5814 10 14 1.8503 3.4504 4.9850 11 1 2.7953 2.8411 5.9548 12 1 1.0869 4.5352 5.6525 13 1 0.9085 2.4129 4.4930 14 6 4.2222 0.7911 1.0067 15 8 4.5998 0.3862 -0.0724 16 6 5.1264 0.6900 2.2080 17 1 5.1635 1.6531 2.7170 18 6 4.5845 -0.3727 3.1661 19 6 4.5325 -1.7247 2.4517 20 6 5.9403 -2.1167 1.9988 21 6 6.4822 -1.0541 1.0406 22 6 6.5343 0.2979 1.7551 23 1 7.1883 0.2247 2.6241 24 6 7.0755 1.3607 0.7968 25 6 8.5275 1.0346 0.4411 26 1 -0.5400 0.9354 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6212 1.4026 -0.9314 31 1 1.5023 1.9268 2.4805 32 1 3.0259 1.3896 3.2277 33 1 3.0396 5.9546 4.3570 34 1 3.5815 -0.0935 3.4888 35 1 5.2383 -0.4456 4.0353 36 1 4.1460 -2.4816 3.1341 37 1 3.8785 -1.6515 1.5828 38 1 6.5943 -2.1898 2.8677 39 1 5.9031 -3.0796 1.4894 40 1 5.8282 -0.9808 0.1718 41 1 7.4853 -1.3330 0.7183 42 1 6.4728 1.3720 -0.1112 43 1 7.0296 2.3388 1.2756 44 1 9.1303 1.0234 1.3492 45 1 8.5735 0.0565 -0.0376 46 1 8.9130 1.7915 -0.2419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294015799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:41 Heat of formation + Delta-G solvation = -50.918059 kcal Electronic energy + Delta-G solvation = -23917.953962 eV Core-core repulsion = 20806.649264 eV Total energy + Delta-G solvation = -3111.304698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78238 -38.66935 -36.95611 -35.17297 -34.80656 -33.99837 -31.86299 -29.99892 -29.84004 -27.21187 -24.84155 -24.70757 -23.45242 -21.72522 -21.58043 -20.78088 -19.36718 -19.07242 -17.67068 -17.12551 -16.52996 -16.27394 -15.87330 -15.61814 -15.47454 -14.78201 -14.70073 -14.64570 -14.32670 -14.10173 -13.97256 -13.76636 -13.38613 -13.23120 -12.89209 -12.75863 -12.69492 -12.44615 -12.31197 -12.23994 -12.17152 -11.96099 -11.85598 -11.67798 -11.63991 -11.45448 -10.85081 -10.83257 -10.70474 -10.44582 -9.97603 -9.36445 -8.30775 -6.37805 1.28029 1.38402 1.40166 1.49643 1.85846 2.33266 2.49021 3.02888 3.62546 3.77665 3.84799 4.04356 4.13430 4.19704 4.22064 4.30360 4.37251 4.52333 4.54605 4.63272 4.63938 4.72540 4.73975 4.77622 4.79103 4.84378 4.91708 4.99837 5.03622 5.10502 5.14981 5.18051 5.27966 5.34305 5.38266 5.40629 5.45278 5.51884 5.57827 5.65464 5.67078 5.79777 5.93009 6.22748 6.63565 6.73657 7.25647 7.46909 8.85788 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.007547 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.861352 B = 3709.052786 C = 4519.135749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.174 4.174 3 C 0.140 3.860 4 N -0.598 5.598 5 C 0.216 3.784 6 C -0.539 4.539 7 H 0.024 0.976 8 C 0.019 3.981 9 N -0.943 5.943 10 Si 0.937 3.063 11 H -0.257 1.257 12 H -0.285 1.285 13 H -0.239 1.239 14 C 0.530 3.470 15 O -0.572 6.572 16 C -0.106 4.106 17 H 0.078 0.922 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.057 4.057 23 H 0.082 0.918 24 C -0.128 4.128 25 C -0.139 4.139 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.034 0.966 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -15.324 -0.517 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.017 3.983 4 N -0.327 5.327 5 C 0.094 3.906 6 C -0.578 4.578 7 H 0.043 0.957 8 C -0.180 4.180 9 N -0.582 5.582 10 Si 0.759 3.241 11 H -0.182 1.182 12 H -0.210 1.210 13 H -0.162 1.162 14 C 0.321 3.679 15 O -0.453 6.453 16 C -0.127 4.127 17 H 0.096 0.904 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.166 4.166 22 C -0.076 4.076 23 H 0.101 0.899 24 C -0.166 4.166 25 C -0.196 4.196 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.605 -15.354 -0.973 15.468 hybrid contribution -0.410 1.001 0.427 1.163 sum 1.194 -14.353 -0.546 14.413 Atomic orbital electron populations 1.24032 0.94927 1.03088 0.98469 1.23138 0.96631 0.97710 1.01815 1.20467 0.91959 0.96147 0.89692 1.47989 1.13990 1.56502 1.14231 1.19745 0.96380 0.91657 0.82845 1.21526 1.36139 0.96807 1.03308 0.95728 1.25793 0.96178 0.94722 1.01278 1.70065 1.47666 1.08979 1.31519 0.85863 0.79885 0.79114 0.79209 1.18191 1.21045 1.16207 1.20722 0.81405 0.75542 0.90261 1.90429 1.74157 1.51091 1.29651 1.21393 0.95536 1.01038 0.94781 0.90410 1.21645 1.01601 0.93948 0.97731 1.21517 0.97875 0.96296 0.99533 1.21492 0.95774 0.98142 0.99390 1.21933 1.01683 0.93131 0.99859 1.20920 0.92931 0.95689 0.98076 0.89942 1.21648 0.97781 0.97501 0.99676 1.21709 0.94714 1.01657 1.01528 0.87933 0.86184 0.88028 0.90431 0.91451 0.94233 0.92919 0.92286 0.91742 0.89286 0.90134 0.94203 0.90930 0.91395 0.90492 0.91519 0.92949 0.94721 0.91897 0.91804 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.17 -5.25 9.82 25.64 0.25 -5.00 16 3 C 0.14 5.16 5.83 85.63 0.50 5.66 16 4 N -0.60 -24.60 2.46 -830.50 -2.05 -26.65 16 5 C 0.22 9.45 3.78 85.64 0.32 9.77 16 6 C -0.54 -29.30 9.33 25.60 0.24 -29.06 16 7 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 8 C 0.02 1.04 5.47 84.65 0.46 1.50 16 9 N -0.94 -56.54 13.96 21.45 0.30 -56.24 16 10 Si 0.94 40.00 27.47 68.60 1.88 41.89 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 14 C 0.53 21.39 5.01 87.66 0.44 21.82 16 15 O -0.57 -24.23 11.11 -3.04 -0.03 -24.27 16 16 C -0.11 -3.82 1.71 -11.54 -0.02 -3.84 16 17 H 0.08 3.28 7.07 -2.39 -0.02 3.26 16 18 C -0.11 -3.29 5.15 30.60 0.16 -3.13 16 19 C -0.11 -2.97 5.70 30.59 0.17 -2.80 16 20 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 21 C -0.13 -3.66 4.69 30.59 0.14 -3.51 16 22 C -0.06 -1.80 1.93 -10.79 -0.02 -1.82 16 23 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.13 -4.40 5.03 30.60 0.15 -4.25 16 25 C -0.14 -3.69 9.67 71.98 0.70 -2.99 16 26 H 0.10 2.42 7.84 -2.91 -0.02 2.40 16 27 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.10 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.08 2.85 7.69 -2.39 -0.02 2.83 16 30 H 0.07 2.62 7.47 -2.39 -0.02 2.60 16 31 H 0.04 1.68 7.09 -2.38 -0.02 1.66 16 32 H 0.05 2.17 3.91 -2.39 -0.01 2.16 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.06 2.00 5.70 -2.38 -0.01 1.98 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.20 7.22 -2.39 -0.02 1.18 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 2.67 5.14 -2.39 -0.01 2.65 16 41 H 0.07 1.67 6.56 -2.39 -0.02 1.65 16 42 H 0.05 2.08 6.04 -2.39 -0.01 2.07 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.55 6.57 -2.39 -0.02 1.54 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -63.58 345.04 5.63 -57.95 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.88 Total: 30.53 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.65 Total: -23.21 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.75 Total: -82.89 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.03 Total: -24.27 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.88 Total: 41.89 kcal Total: -63.58 5.63 -57.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.027 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds