Wall clock time and date at job start Tue Mar 31 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99900 * 2 1 4 4 N 1.46498 * 109.47219 * 125.01300 * 3 2 1 5 5 C 1.46501 * 120.00540 * 275.10716 * 4 3 2 6 6 C 1.50697 * 109.46972 * 275.58498 * 5 4 3 7 7 H 1.07996 * 120.00584 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99912 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99602 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00192 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46749 * 90.00309 * 10 8 6 12 12 H 1.48499 * 109.46919 * 210.00126 * 10 8 6 13 13 H 1.48494 * 109.46926 * 330.00329 * 10 8 6 14 14 C 1.34783 * 119.99695 * 95.10854 * 4 3 2 15 15 O 1.21277 * 119.99899 * 4.96010 * 14 4 3 16 16 C 1.50694 * 120.00067 * 184.96184 * 14 4 3 17 17 H 1.09001 * 109.47171 * 40.61838 * 16 14 4 18 18 C 1.52999 * 109.47422 * 280.61713 * 16 14 4 19 19 C 1.53002 * 109.46923 * 300.00134 * 18 16 14 20 20 C 1.53000 * 109.46705 * 299.99810 * 19 18 16 21 21 C 1.53000 * 109.47498 * 60.00087 * 20 19 18 22 22 C 1.52996 * 109.47441 * 160.61562 * 16 14 4 23 23 H 1.08999 * 109.47259 * 180.02562 * 22 16 14 24 24 C 1.53000 * 109.47159 * 300.00131 * 22 16 14 25 25 C 1.53000 * 109.47613 * 184.99719 * 24 22 16 26 26 H 1.07996 * 120.00157 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99845 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00157 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47110 * 5.01658 * 3 2 1 30 30 H 1.08996 * 109.47131 * 245.01592 * 3 2 1 31 31 H 1.08995 * 109.46788 * 35.58408 * 5 4 3 32 32 H 1.09000 * 109.47243 * 155.57979 * 5 4 3 33 33 H 0.97012 * 119.99909 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47442 * 179.97438 * 18 16 14 35 35 H 1.09003 * 109.46991 * 59.99688 * 18 16 14 36 36 H 1.09003 * 109.46862 * 179.97438 * 19 18 16 37 37 H 1.08999 * 109.47343 * 59.99595 * 19 18 16 38 38 H 1.09001 * 109.46589 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47446 * 299.99610 * 20 19 18 40 40 H 1.09004 * 109.46390 * 59.99754 * 21 20 19 41 41 H 1.08998 * 109.47287 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.47388 * 304.99930 * 24 22 16 43 43 H 1.09008 * 109.47351 * 64.99428 * 24 22 16 44 44 H 1.08998 * 109.46725 * 300.00496 * 25 24 22 45 45 H 1.08999 * 109.46806 * 59.99363 * 25 24 22 46 46 H 1.08993 * 109.47592 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9940 1.3318 1.1312 5 6 2.5285 1.7596 2.4528 6 6 2.5834 3.2629 2.5423 7 1 2.9300 3.8419 1.6991 8 6 2.1902 3.8994 3.7005 9 7 1.7677 3.1944 4.7272 10 14 2.2590 5.7628 3.8118 11 1 0.9669 6.3340 3.3540 12 1 2.5073 6.1657 5.2194 13 1 3.3573 6.2699 2.9506 14 6 4.2784 0.9628 0.9561 15 8 4.6864 0.6952 -0.1542 16 6 5.2075 0.8827 2.1399 17 1 4.6793 0.4459 2.9874 18 6 5.6875 2.2881 2.5076 19 6 6.4289 2.9013 1.3179 20 6 7.6336 2.0276 0.9626 21 6 7.1536 0.6221 0.5949 22 6 6.4122 0.0091 1.7846 23 1 7.0839 -0.0492 2.6410 24 6 5.9322 -1.3964 1.4169 25 6 7.1418 -2.3036 1.1828 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0899 30 1 2.6210 1.4028 -0.9315 31 1 1.5024 1.4240 2.6027 32 1 3.1684 1.3262 3.2213 33 1 1.4914 3.6421 5.5423 34 1 6.3591 2.2303 3.3641 35 1 4.8292 2.9106 2.7607 36 1 6.7705 3.9028 1.5797 37 1 5.7569 2.9592 0.4616 38 1 8.1620 2.4647 0.1153 39 1 8.3056 1.9697 1.8188 40 1 6.4816 0.6802 -0.2613 41 1 8.0118 -0.0002 0.3414 42 1 5.3285 -1.7987 2.2306 43 1 5.3320 -1.3494 0.5082 44 1 7.7455 -1.9013 0.3692 45 1 7.7420 -2.3506 2.0915 46 1 6.7999 -3.3047 0.9204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294015803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:45 Heat of formation + Delta-G solvation = -42.638195 kcal Electronic energy + Delta-G solvation = -23857.913801 eV Core-core repulsion = 20746.968145 eV Total energy + Delta-G solvation = -3110.945657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22330 -37.18407 -35.26646 -33.71601 -33.30484 -32.19456 -30.44474 -28.56866 -27.51143 -25.73868 -23.46366 -23.05377 -22.23330 -20.27499 -20.21918 -19.44023 -17.78815 -16.53034 -16.16944 -15.51689 -15.03240 -14.64249 -14.43145 -14.40708 -13.69721 -13.53577 -13.40495 -12.89301 -12.68741 -12.54731 -12.29523 -12.19676 -11.87288 -11.59953 -11.32342 -11.20602 -11.03673 -11.01566 -10.92155 -10.85296 -10.70586 -10.48595 -10.30812 -10.24974 -10.11958 -9.75918 -9.48352 -9.36650 -9.07132 -8.59924 -8.34569 -7.68915 -6.19826 -4.25642 2.59320 3.21068 3.28918 3.31530 3.48443 4.09293 4.33034 5.05448 5.11894 5.16532 5.24834 5.37240 5.47173 5.54757 5.57740 5.60753 5.65932 5.81263 5.92601 5.96257 6.05463 6.05873 6.10488 6.15752 6.20914 6.21756 6.34091 6.35829 6.39278 6.43107 6.63301 6.65855 6.70717 6.77465 6.83613 6.86295 6.94567 7.07679 7.11464 7.20149 7.27313 7.60084 7.76123 8.05384 8.41536 8.79402 9.10862 9.40624 10.86546 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.007316 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.848901 B = 3826.177460 C = 5025.073029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.141 3.859 4 N -0.592 5.592 5 C 0.236 3.764 6 C -0.532 4.532 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.529 3.471 15 O -0.566 6.566 16 C -0.095 4.095 17 H 0.088 0.912 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.137 4.137 22 C -0.063 4.063 23 H 0.063 0.937 24 C -0.126 4.126 25 C -0.147 4.147 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -5.745 -4.957 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.018 3.982 4 N -0.321 5.321 5 C 0.116 3.884 6 C -0.571 4.571 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.318 3.682 15 O -0.448 6.448 16 C -0.116 4.116 17 H 0.106 0.894 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.174 4.174 22 C -0.082 4.082 23 H 0.082 0.918 24 C -0.163 4.163 25 C -0.204 4.204 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.902 -5.847 -5.309 9.859 hybrid contribution -0.149 1.023 0.478 1.139 sum 5.753 -4.824 -4.831 8.928 Atomic orbital electron populations 1.23758 0.95826 1.01494 1.01940 1.23370 0.96074 0.99239 0.98683 1.20385 0.92387 0.94555 0.90897 1.48245 1.08416 1.63526 1.11961 1.19468 0.96064 0.95043 0.77817 1.21426 1.44368 0.91556 0.99731 0.92003 1.24926 0.94808 0.98455 0.95506 1.69926 1.43062 1.35656 1.04029 0.86580 0.78651 0.85384 0.77437 1.20555 1.21057 1.19650 1.20456 0.82301 0.75396 0.90046 1.90378 1.75173 1.52634 1.26596 1.21252 0.95223 0.98184 0.96922 0.89380 1.21739 1.02244 0.94978 0.97091 1.21489 0.97075 0.97902 0.98902 1.21496 0.97364 0.96423 0.99851 1.22117 1.00012 0.94485 1.00787 1.20949 0.95508 0.93667 0.98104 0.91821 1.21661 0.97860 0.94636 1.02160 1.21767 0.98530 0.98908 1.01238 0.88456 0.89008 0.88042 0.90197 0.89941 0.95004 0.93974 0.92520 0.92376 0.87115 0.92806 0.91966 0.93147 0.93218 0.87016 0.93580 0.92889 0.90676 0.92615 0.93350 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 14.32 29.01 0.42 -2.42 16 2 C -0.15 -2.55 9.84 -36.02 -0.35 -2.91 16 3 C 0.14 2.61 5.96 -5.19 -0.03 2.58 16 4 N -0.59 -12.15 2.44 -176.44 -0.43 -12.58 16 5 C 0.24 5.45 4.73 -5.19 -0.02 5.43 16 6 C -0.53 -13.27 7.10 -34.44 -0.24 -13.52 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.91 13.29 55.43 0.74 -23.18 16 10 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.53 10.47 5.02 -10.99 -0.06 10.41 16 15 O -0.57 -11.64 11.02 5.56 0.06 -11.58 16 16 C -0.09 -1.72 1.71 -91.78 -0.16 -1.88 16 17 H 0.09 1.65 6.53 -51.93 -0.34 1.31 16 18 C -0.12 -2.27 5.29 -26.73 -0.14 -2.41 16 19 C -0.12 -2.01 5.70 -26.73 -0.15 -2.16 16 20 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 21 C -0.14 -2.16 4.67 -26.73 -0.12 -2.29 16 22 C -0.06 -1.00 1.93 -90.62 -0.18 -1.18 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 C -0.13 -1.89 5.03 -26.73 -0.13 -2.02 16 25 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 26 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 27 H 0.09 1.17 8.06 -52.48 -0.42 0.75 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.08 1.49 7.76 -51.93 -0.40 1.09 16 30 H 0.08 1.53 7.22 -51.93 -0.37 1.15 16 31 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.04 1.01 5.66 -51.93 -0.29 0.72 16 33 H 0.27 6.83 8.31 -40.81 -0.34 6.49 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.11 2.38 5.03 -51.93 -0.26 2.12 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.20 7.02 -51.93 -0.36 0.84 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 2.05 4.94 -51.97 -0.26 1.79 16 41 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 42 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.07 1.28 6.38 -51.92 -0.33 0.94 16 44 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -25.97 346.97 -8.41 -34.39 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.91 Total: 6.75 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.08 Total: -14.14 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.31 Total: -35.76 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.06 Total: -11.58 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -25.97 -8.41 -34.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.253 kcal (2) G-P(sol) polarization free energy of solvation -25.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds