Wall clock time and date at job start Tue Mar 31 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99900 * 2 1 4 4 N 1.46498 * 109.47219 * 125.01300 * 3 2 1 5 5 C 1.46501 * 120.00540 * 275.10716 * 4 3 2 6 6 C 1.50697 * 109.46972 * 275.58498 * 5 4 3 7 7 H 1.07996 * 120.00584 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99912 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99602 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00192 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46749 * 90.00309 * 10 8 6 12 12 H 1.48499 * 109.46919 * 210.00126 * 10 8 6 13 13 H 1.48494 * 109.46926 * 330.00329 * 10 8 6 14 14 C 1.34783 * 119.99695 * 95.10854 * 4 3 2 15 15 O 1.21277 * 119.99899 * 4.96010 * 14 4 3 16 16 C 1.50694 * 120.00067 * 184.96184 * 14 4 3 17 17 H 1.09001 * 109.47171 * 40.61838 * 16 14 4 18 18 C 1.52999 * 109.47422 * 280.61713 * 16 14 4 19 19 C 1.53002 * 109.46923 * 300.00134 * 18 16 14 20 20 C 1.53000 * 109.46705 * 299.99810 * 19 18 16 21 21 C 1.53000 * 109.47498 * 60.00087 * 20 19 18 22 22 C 1.52996 * 109.47441 * 160.61562 * 16 14 4 23 23 H 1.08999 * 109.47259 * 180.02562 * 22 16 14 24 24 C 1.53000 * 109.47159 * 300.00131 * 22 16 14 25 25 C 1.53000 * 109.47613 * 184.99719 * 24 22 16 26 26 H 1.07996 * 120.00157 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99845 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00157 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47110 * 5.01658 * 3 2 1 30 30 H 1.08996 * 109.47131 * 245.01592 * 3 2 1 31 31 H 1.08995 * 109.46788 * 35.58408 * 5 4 3 32 32 H 1.09000 * 109.47243 * 155.57979 * 5 4 3 33 33 H 0.97012 * 119.99909 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47442 * 179.97438 * 18 16 14 35 35 H 1.09003 * 109.46991 * 59.99688 * 18 16 14 36 36 H 1.09003 * 109.46862 * 179.97438 * 19 18 16 37 37 H 1.08999 * 109.47343 * 59.99595 * 19 18 16 38 38 H 1.09001 * 109.46589 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47446 * 299.99610 * 20 19 18 40 40 H 1.09004 * 109.46390 * 59.99754 * 21 20 19 41 41 H 1.08998 * 109.47287 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.47388 * 304.99930 * 24 22 16 43 43 H 1.09008 * 109.47351 * 64.99428 * 24 22 16 44 44 H 1.08998 * 109.46725 * 300.00496 * 25 24 22 45 45 H 1.08999 * 109.46806 * 59.99363 * 25 24 22 46 46 H 1.08993 * 109.47592 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9940 1.3318 1.1312 5 6 2.5285 1.7596 2.4528 6 6 2.5834 3.2629 2.5423 7 1 2.9300 3.8419 1.6991 8 6 2.1902 3.8994 3.7005 9 7 1.7677 3.1944 4.7272 10 14 2.2590 5.7628 3.8118 11 1 0.9669 6.3340 3.3540 12 1 2.5073 6.1657 5.2194 13 1 3.3573 6.2699 2.9506 14 6 4.2784 0.9628 0.9561 15 8 4.6864 0.6952 -0.1542 16 6 5.2075 0.8827 2.1399 17 1 4.6793 0.4459 2.9874 18 6 5.6875 2.2881 2.5076 19 6 6.4289 2.9013 1.3179 20 6 7.6336 2.0276 0.9626 21 6 7.1536 0.6221 0.5949 22 6 6.4122 0.0091 1.7846 23 1 7.0839 -0.0492 2.6410 24 6 5.9322 -1.3964 1.4169 25 6 7.1418 -2.3036 1.1828 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0899 30 1 2.6210 1.4028 -0.9315 31 1 1.5024 1.4240 2.6027 32 1 3.1684 1.3262 3.2213 33 1 1.4914 3.6421 5.5423 34 1 6.3591 2.2303 3.3641 35 1 4.8292 2.9106 2.7607 36 1 6.7705 3.9028 1.5797 37 1 5.7569 2.9592 0.4616 38 1 8.1620 2.4647 0.1153 39 1 8.3056 1.9697 1.8188 40 1 6.4816 0.6802 -0.2613 41 1 8.0118 -0.0002 0.3414 42 1 5.3285 -1.7987 2.2306 43 1 5.3320 -1.3494 0.5082 44 1 7.7455 -1.9013 0.3692 45 1 7.7420 -2.3506 2.0915 46 1 6.7999 -3.3047 0.9204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294015803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:45 Heat of formation + Delta-G solvation = -53.443748 kcal Electronic energy + Delta-G solvation = -23858.382365 eV Core-core repulsion = 20746.968145 eV Total energy + Delta-G solvation = -3111.414220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72554 -38.63535 -36.88599 -35.19609 -34.71608 -33.90900 -31.81633 -29.80830 -29.36328 -27.24708 -24.93026 -24.65754 -23.67565 -21.65273 -21.49421 -20.78630 -19.42295 -18.44836 -17.73858 -17.10657 -16.51285 -16.24979 -15.96945 -15.74218 -14.99046 -14.92095 -14.72108 -14.38756 -14.21071 -13.98354 -13.85108 -13.64160 -13.40464 -13.03635 -12.81697 -12.74368 -12.70378 -12.48527 -12.28338 -12.25039 -12.17883 -12.02667 -11.78196 -11.70757 -11.58843 -11.48610 -10.80606 -10.77898 -10.50847 -10.41415 -9.87624 -9.38955 -8.17828 -6.29481 1.29575 1.40547 1.43642 1.52223 1.88704 2.38838 2.58108 3.11926 3.69519 3.81884 3.92632 4.05389 4.14597 4.24082 4.24638 4.33863 4.43301 4.55695 4.57903 4.63259 4.71157 4.75100 4.82252 4.84542 4.92307 4.98090 5.01965 5.03425 5.08708 5.16652 5.22246 5.26377 5.36422 5.39461 5.41957 5.48812 5.54500 5.64791 5.66538 5.69001 5.76090 5.83310 6.02344 6.09605 6.66761 6.87453 7.36549 7.52925 8.87636 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.007316 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.848901 B = 3826.177460 C = 5025.073029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.177 4.177 3 C 0.141 3.859 4 N -0.600 5.600 5 C 0.255 3.745 6 C -0.531 4.531 7 H 0.051 0.949 8 C 0.026 3.974 9 N -0.918 5.918 10 Si 0.948 3.052 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.270 1.270 14 C 0.526 3.474 15 O -0.573 6.573 16 C -0.094 4.094 17 H 0.077 0.923 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.060 4.060 23 H 0.082 0.918 24 C -0.124 4.124 25 C -0.141 4.141 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.011 0.989 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 -6.054 -4.953 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C 0.018 3.982 4 N -0.329 5.329 5 C 0.134 3.866 6 C -0.569 4.569 7 H 0.069 0.931 8 C -0.175 4.175 9 N -0.557 5.557 10 Si 0.774 3.226 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.195 1.195 14 C 0.317 3.683 15 O -0.455 6.455 16 C -0.115 4.115 17 H 0.095 0.905 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.170 4.170 22 C -0.079 4.079 23 H 0.100 0.900 24 C -0.161 4.161 25 C -0.198 4.198 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.102 -6.160 -5.328 10.807 hybrid contribution -0.576 1.101 0.430 1.315 sum 6.526 -5.059 -4.898 9.601 Atomic orbital electron populations 1.24000 0.95142 1.02883 0.98698 1.23201 0.96706 0.98048 1.01632 1.20419 0.92098 0.95700 0.89961 1.48263 1.09234 1.63881 1.11525 1.19053 0.94532 0.94064 0.78923 1.21510 1.43743 0.92373 0.99314 0.93080 1.25552 0.94587 1.02120 0.95217 1.70012 1.44084 1.37131 1.04500 0.85702 0.78579 0.80920 0.77426 1.20240 1.20633 1.19490 1.20777 0.82138 0.74875 0.90541 1.90393 1.75170 1.52850 1.27116 1.21288 0.95883 0.98636 0.95711 0.90475 1.21656 1.01397 0.94507 0.98270 1.21447 0.97420 0.98974 0.97197 1.21474 0.96519 0.95492 1.01134 1.22020 1.00115 0.95313 0.99535 1.20977 0.94563 0.93486 0.98857 0.90018 1.21609 0.98779 0.94882 1.00843 1.21718 0.97385 0.98711 1.02024 0.88167 0.86394 0.88092 0.90895 0.90444 0.97094 0.94963 0.92406 0.90639 0.90492 0.91925 0.94792 0.91915 0.91249 0.89735 0.91446 0.93078 0.93129 0.92373 0.91922 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 14.32 67.78 0.97 -3.83 16 2 C -0.18 -5.87 9.84 25.65 0.25 -5.61 16 3 C 0.14 5.38 5.96 85.63 0.51 5.89 16 4 N -0.60 -25.45 2.44 -830.52 -2.03 -27.47 16 5 C 0.26 12.20 4.73 85.63 0.41 12.61 16 6 C -0.53 -27.09 7.10 25.60 0.18 -26.91 16 7 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 8 C 0.03 1.33 5.46 84.65 0.46 1.79 16 9 N -0.92 -49.96 13.29 21.45 0.28 -49.68 16 10 Si 0.95 41.41 29.54 68.60 2.03 43.44 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.53 21.36 5.02 87.65 0.44 21.80 16 15 O -0.57 -24.09 11.02 -3.02 -0.03 -24.12 16 16 C -0.09 -3.43 1.71 -11.54 -0.02 -3.45 16 17 H 0.08 2.95 6.53 -2.39 -0.02 2.94 16 18 C -0.12 -4.43 5.29 30.59 0.16 -4.26 16 19 C -0.11 -3.83 5.70 30.60 0.17 -3.66 16 20 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 21 C -0.13 -3.96 4.67 30.59 0.14 -3.81 16 22 C -0.06 -1.82 1.93 -10.80 -0.02 -1.84 16 23 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 24 C -0.12 -3.58 5.03 30.59 0.15 -3.43 16 25 C -0.14 -3.19 9.67 71.98 0.70 -2.50 16 26 H 0.10 2.79 7.84 -2.91 -0.02 2.76 16 27 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 28 H 0.10 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.07 2.82 7.76 -2.39 -0.02 2.80 16 30 H 0.08 2.98 7.22 -2.39 -0.02 2.96 16 31 H 0.01 0.57 8.11 -2.39 -0.02 0.55 16 32 H 0.03 1.61 5.66 -2.39 -0.01 1.59 16 33 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 3.37 5.03 -2.39 -0.01 3.36 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.03 1.32 7.02 -2.39 -0.02 1.31 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 3.05 4.94 -3.11 -0.02 3.04 16 41 H 0.07 1.73 6.57 -2.39 -0.02 1.71 16 42 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.05 1.71 6.38 -2.38 -0.02 1.70 16 44 H 0.06 1.28 6.56 -2.39 -0.02 1.27 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -55.82 346.97 5.87 -49.95 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.93 Total: 27.99 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.69 Total: -20.10 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -1.74 Total: -77.15 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.03 Total: -24.12 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -55.82 5.87 -49.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.495 kcal (2) G-P(sol) polarization free energy of solvation -55.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds