Wall clock time and date at job start Tue Mar 31 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00138 * 2 1 4 4 N 1.46492 * 109.47602 * 124.99545 * 3 2 1 5 5 C 1.46503 * 119.99964 * 92.83027 * 4 3 2 6 6 C 1.50701 * 109.46940 * 263.97348 * 5 4 3 7 7 H 1.08005 * 120.00398 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99714 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00565 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46905 * 270.00182 * 10 8 6 12 12 H 1.48505 * 109.46887 * 29.99903 * 10 8 6 13 13 H 1.48494 * 109.47542 * 150.00181 * 10 8 6 14 14 C 1.34777 * 120.00312 * 272.83499 * 4 3 2 15 15 O 1.21277 * 119.99989 * 3.89303 * 14 4 3 16 16 C 1.50702 * 120.00191 * 183.90406 * 14 4 3 17 17 H 1.09000 * 109.47150 * 25.86920 * 16 14 4 18 18 C 1.53001 * 109.46858 * 265.87901 * 16 14 4 19 19 C 1.52995 * 109.47214 * 179.97438 * 18 16 14 20 20 C 1.53004 * 109.47367 * 59.99867 * 19 18 16 21 21 C 1.53005 * 109.46598 * 300.00020 * 20 19 18 22 22 C 1.52994 * 109.47574 * 145.87477 * 16 14 4 23 23 H 1.09006 * 109.47259 * 59.99972 * 22 16 14 24 24 C 1.53001 * 109.47374 * 300.00108 * 22 16 14 25 25 C 1.52998 * 109.47286 * 174.99757 * 24 22 16 26 26 H 1.08004 * 119.99923 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00290 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.46959 * 4.99957 * 3 2 1 30 30 H 1.08998 * 109.46917 * 244.99977 * 3 2 1 31 31 H 1.08997 * 109.47584 * 143.97486 * 5 4 3 32 32 H 1.08997 * 109.47010 * 23.96866 * 5 4 3 33 33 H 0.97005 * 120.00209 * 0.02562 * 9 8 6 34 34 H 1.09006 * 109.46816 * 299.99319 * 18 16 14 35 35 H 1.08997 * 109.47739 * 59.99140 * 18 16 14 36 36 H 1.09000 * 109.47499 * 299.99710 * 19 18 16 37 37 H 1.09008 * 109.47273 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.47213 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47232 * 59.99839 * 20 19 18 40 40 H 1.08994 * 109.47181 * 299.99851 * 21 20 19 41 41 H 1.09007 * 109.46837 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.46768 * 295.00087 * 24 22 16 43 43 H 1.09001 * 109.46922 * 54.99483 * 24 22 16 44 44 H 1.08990 * 109.47101 * 299.99594 * 25 24 22 45 45 H 1.09001 * 109.46839 * 60.00000 * 25 24 22 46 46 H 1.09008 * 109.46789 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3770 0.8836 0.9533 6 6 4.4972 -0.5564 1.3811 7 1 3.6301 -1.0846 1.7494 8 6 5.7142 -1.1997 1.3025 9 7 6.7700 -0.5567 0.8537 10 14 5.8632 -2.9848 1.8322 11 1 6.2045 -3.0458 3.2762 12 1 4.5716 -3.6797 1.5991 13 1 6.9316 -3.6480 1.0426 14 6 2.5770 1.7693 2.3362 15 8 1.4148 2.0736 2.5021 16 6 3.5552 1.8802 3.4773 17 1 4.5608 2.0215 3.0813 18 6 3.5115 0.5992 4.3127 19 6 4.5050 0.7114 5.4708 20 6 4.1309 1.9066 6.3498 21 6 4.1746 3.1876 5.5142 22 6 3.1804 3.0752 4.3560 23 1 2.1748 2.9339 4.7521 24 6 3.2241 4.3563 3.5206 25 6 2.7298 5.5327 4.3646 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 5.0398 1.4996 1.5608 32 1 4.6563 0.9752 -0.0963 33 1 6.6926 0.3702 0.5783 34 1 2.5058 0.4578 4.7088 35 1 3.7784 -0.2523 3.6867 36 1 5.5106 0.8526 5.0745 37 1 4.4736 -0.2011 6.0663 38 1 4.8389 1.9868 7.1745 39 1 3.1254 1.7654 6.7461 40 1 5.1801 3.3287 5.1179 41 1 3.9084 4.0391 6.1405 42 1 4.2481 4.5451 3.1983 43 1 2.5833 4.2418 2.6462 44 1 1.7059 5.3439 4.6867 45 1 3.3706 5.6471 5.2389 46 1 2.7613 6.4454 3.7694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294015807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:49 Heat of formation + Delta-G solvation = -54.795265 kcal Electronic energy + Delta-G solvation = -23746.451254 eV Core-core repulsion = 20634.978427 eV Total energy + Delta-G solvation = -3111.472827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.95695 -37.59478 -35.42891 -33.72438 -33.52031 -32.19153 -30.57514 -28.73587 -27.07027 -25.68727 -23.64904 -23.06012 -22.54309 -20.34300 -19.82968 -19.35110 -18.33012 -17.01434 -16.34487 -15.63638 -14.83824 -14.60823 -14.33465 -14.02571 -13.85093 -13.65343 -13.31604 -13.25244 -13.00110 -12.72441 -12.51304 -12.17717 -11.97556 -11.79009 -11.43525 -11.26112 -11.19528 -11.03643 -10.85523 -10.79891 -10.69431 -10.51424 -10.41486 -10.21710 -10.04685 -9.86413 -9.54269 -9.21578 -9.14275 -8.69703 -8.48092 -7.69416 -6.50724 -4.25624 2.69105 3.34850 3.37656 3.44452 3.53200 4.00836 4.41045 4.94123 4.99399 5.10502 5.20998 5.34096 5.40660 5.43162 5.49924 5.58059 5.68358 5.72505 5.75393 5.87415 5.91173 5.92599 5.94142 6.01762 6.04893 6.11517 6.23912 6.26975 6.32162 6.37804 6.42389 6.46919 6.53666 6.56762 6.62463 6.66848 6.81410 6.94373 7.00375 7.08927 7.21432 7.43911 7.86829 8.15165 8.42527 8.65904 9.02450 9.43988 10.84799 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.007844 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.911842 B = 3568.562786 C = 4859.570455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.147 3.853 4 N -0.592 5.592 5 C 0.227 3.773 6 C -0.607 4.607 7 H 0.057 0.943 8 C 0.026 3.974 9 N -0.906 5.906 10 Si 1.064 2.936 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.283 1.283 14 C 0.527 3.473 15 O -0.570 6.570 16 C -0.091 4.091 17 H 0.092 0.908 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.070 4.070 23 H 0.076 0.924 24 C -0.122 4.122 25 C -0.147 4.147 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 6.102 5.454 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.167 4.167 3 C 0.024 3.976 4 N -0.322 5.322 5 C 0.107 3.893 6 C -0.646 4.646 7 H 0.075 0.925 8 C -0.179 4.179 9 N -0.541 5.541 10 Si 0.892 3.108 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.209 1.209 14 C 0.316 3.684 15 O -0.450 6.450 16 C -0.112 4.112 17 H 0.110 0.890 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.089 4.089 23 H 0.094 0.906 24 C -0.159 4.159 25 C -0.204 4.204 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.448 5.015 5.655 8.770 hybrid contribution -0.977 1.041 -0.294 1.458 sum -5.425 6.056 5.361 9.739 Atomic orbital electron populations 1.23671 0.95896 1.01010 1.02803 1.23423 0.95889 0.99699 0.97700 1.20386 0.92363 0.95190 0.89638 1.48084 1.13125 1.62331 1.08668 1.19545 0.76985 0.95845 0.96951 1.22283 0.97954 0.96589 1.47731 0.92483 1.25710 0.91955 1.05677 0.94594 1.70796 1.31121 1.12615 1.39582 0.83593 0.75698 0.74710 0.76770 1.21172 1.21420 1.20908 1.20478 0.88554 0.75749 0.83592 1.90570 1.19089 1.52216 1.83173 1.21240 0.99595 0.96489 0.93857 0.88960 1.21522 0.98830 0.97760 0.96631 1.21488 0.99821 0.97387 0.96513 1.21560 1.01050 0.95277 0.97758 1.21625 0.99392 0.97325 0.96633 1.21039 0.99759 0.93211 0.94843 0.90571 1.21588 1.01010 0.94464 0.98856 1.21764 1.01092 0.97740 0.99846 0.89138 0.89060 0.86751 0.91040 0.90507 0.95415 0.95805 0.92123 0.92799 0.88673 0.91626 0.92251 0.92542 0.92357 0.92063 0.92085 0.92458 0.91815 0.92882 0.92789 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.23 14.32 29.01 0.42 -2.81 16 2 C -0.15 -2.75 9.83 -36.03 -0.35 -3.10 16 3 C 0.15 2.78 5.83 -5.20 -0.03 2.75 16 4 N -0.59 -12.44 2.46 -176.44 -0.43 -12.87 16 5 C 0.23 5.20 4.31 -5.19 -0.02 5.18 16 6 C -0.61 -15.18 7.59 -34.44 -0.26 -15.44 16 7 H 0.06 1.49 7.34 -52.48 -0.39 1.10 16 8 C 0.03 0.67 5.46 -17.82 -0.10 0.58 16 9 N -0.91 -24.98 13.65 55.43 0.76 -24.23 16 10 Si 1.06 23.68 29.90 -169.99 -5.08 18.59 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 12 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.53 11.02 5.50 -10.98 -0.06 10.96 16 15 O -0.57 -12.88 15.37 5.56 0.09 -12.79 16 16 C -0.09 -1.69 1.50 -91.77 -0.14 -1.83 16 17 H 0.09 1.83 5.83 -51.93 -0.30 1.53 16 18 C -0.11 -2.03 5.18 -26.73 -0.14 -2.16 16 19 C -0.11 -1.80 5.92 -26.73 -0.16 -1.96 16 20 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 21 C -0.11 -1.53 4.96 -26.70 -0.13 -1.66 16 22 C -0.07 -1.11 1.40 -90.60 -0.13 -1.24 16 23 H 0.08 1.31 7.86 -51.93 -0.41 0.91 16 24 C -0.12 -1.84 5.22 -26.73 -0.14 -1.98 16 25 C -0.15 -1.84 9.67 37.16 0.36 -1.48 16 26 H 0.09 1.34 8.06 -52.48 -0.42 0.91 16 27 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 28 H 0.11 2.29 8.06 -52.48 -0.42 1.86 16 29 H 0.07 1.32 7.22 -51.92 -0.37 0.94 16 30 H 0.08 1.34 7.81 -51.93 -0.41 0.93 16 31 H 0.03 0.66 5.80 -51.93 -0.30 0.35 16 32 H 0.02 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.27 7.31 7.22 -40.82 -0.29 7.01 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 2.02 5.74 -51.93 -0.30 1.72 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.73 6.57 -51.92 -0.34 0.39 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 46 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -27.63 354.84 -8.43 -36.05 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.05 Total: 5.86 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.04 Total: -15.97 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.32 Total: -37.10 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.08 Total: 18.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.63 -8.43 -36.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.742 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds