Wall clock time and date at job start Tue Mar 31 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00138 * 2 1 4 4 N 1.46492 * 109.47602 * 124.99545 * 3 2 1 5 5 C 1.46503 * 119.99964 * 92.83027 * 4 3 2 6 6 C 1.50701 * 109.46940 * 263.97348 * 5 4 3 7 7 H 1.08005 * 120.00398 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99714 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00565 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46905 * 270.00182 * 10 8 6 12 12 H 1.48505 * 109.46887 * 29.99903 * 10 8 6 13 13 H 1.48494 * 109.47542 * 150.00181 * 10 8 6 14 14 C 1.34777 * 120.00312 * 272.83499 * 4 3 2 15 15 O 1.21277 * 119.99989 * 3.89303 * 14 4 3 16 16 C 1.50702 * 120.00191 * 183.90406 * 14 4 3 17 17 H 1.09000 * 109.47150 * 25.86920 * 16 14 4 18 18 C 1.53001 * 109.46858 * 265.87901 * 16 14 4 19 19 C 1.52995 * 109.47214 * 179.97438 * 18 16 14 20 20 C 1.53004 * 109.47367 * 59.99867 * 19 18 16 21 21 C 1.53005 * 109.46598 * 300.00020 * 20 19 18 22 22 C 1.52994 * 109.47574 * 145.87477 * 16 14 4 23 23 H 1.09006 * 109.47259 * 59.99972 * 22 16 14 24 24 C 1.53001 * 109.47374 * 300.00108 * 22 16 14 25 25 C 1.52998 * 109.47286 * 174.99757 * 24 22 16 26 26 H 1.08004 * 119.99923 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00290 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.46959 * 4.99957 * 3 2 1 30 30 H 1.08998 * 109.46917 * 244.99977 * 3 2 1 31 31 H 1.08997 * 109.47584 * 143.97486 * 5 4 3 32 32 H 1.08997 * 109.47010 * 23.96866 * 5 4 3 33 33 H 0.97005 * 120.00209 * 0.02562 * 9 8 6 34 34 H 1.09006 * 109.46816 * 299.99319 * 18 16 14 35 35 H 1.08997 * 109.47739 * 59.99140 * 18 16 14 36 36 H 1.09000 * 109.47499 * 299.99710 * 19 18 16 37 37 H 1.09008 * 109.47273 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.47213 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47232 * 59.99839 * 20 19 18 40 40 H 1.08994 * 109.47181 * 299.99851 * 21 20 19 41 41 H 1.09007 * 109.46837 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.46768 * 295.00087 * 24 22 16 43 43 H 1.09001 * 109.46922 * 54.99483 * 24 22 16 44 44 H 1.08990 * 109.47101 * 299.99594 * 25 24 22 45 45 H 1.09001 * 109.46839 * 60.00000 * 25 24 22 46 46 H 1.09008 * 109.46789 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3770 0.8836 0.9533 6 6 4.4972 -0.5564 1.3811 7 1 3.6301 -1.0846 1.7494 8 6 5.7142 -1.1997 1.3025 9 7 6.7700 -0.5567 0.8537 10 14 5.8632 -2.9848 1.8322 11 1 6.2045 -3.0458 3.2762 12 1 4.5716 -3.6797 1.5991 13 1 6.9316 -3.6480 1.0426 14 6 2.5770 1.7693 2.3362 15 8 1.4148 2.0736 2.5021 16 6 3.5552 1.8802 3.4773 17 1 4.5608 2.0215 3.0813 18 6 3.5115 0.5992 4.3127 19 6 4.5050 0.7114 5.4708 20 6 4.1309 1.9066 6.3498 21 6 4.1746 3.1876 5.5142 22 6 3.1804 3.0752 4.3560 23 1 2.1748 2.9339 4.7521 24 6 3.2241 4.3563 3.5206 25 6 2.7298 5.5327 4.3646 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 5.0398 1.4996 1.5608 32 1 4.6563 0.9752 -0.0963 33 1 6.6926 0.3702 0.5783 34 1 2.5058 0.4578 4.7088 35 1 3.7784 -0.2523 3.6867 36 1 5.5106 0.8526 5.0745 37 1 4.4736 -0.2011 6.0663 38 1 4.8389 1.9868 7.1745 39 1 3.1254 1.7654 6.7461 40 1 5.1801 3.3287 5.1179 41 1 3.9084 4.0391 6.1405 42 1 4.2481 4.5451 3.1983 43 1 2.5833 4.2418 2.6462 44 1 1.7059 5.3439 4.6867 45 1 3.3706 5.6471 5.2389 46 1 2.7613 6.4454 3.7694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294015807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:48 Heat of formation + Delta-G solvation = -67.138831 kcal Electronic energy + Delta-G solvation = -23746.986511 eV Core-core repulsion = 20634.978427 eV Total energy + Delta-G solvation = -3112.008084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51721 -39.01338 -37.15244 -35.38092 -34.81842 -33.95110 -31.92722 -29.93357 -28.91550 -27.26254 -25.11361 -24.71761 -23.95032 -21.61976 -21.18961 -20.75962 -20.01089 -18.87395 -17.99778 -17.25956 -16.40328 -15.86763 -15.71846 -15.63909 -15.44813 -15.01315 -14.84132 -14.72018 -14.40905 -14.10419 -13.95220 -13.74380 -13.41331 -13.36752 -13.17194 -12.62204 -12.51829 -12.46799 -12.35527 -12.28044 -12.03520 -11.95859 -11.93987 -11.67422 -11.34742 -11.24722 -11.13544 -10.83374 -10.65401 -10.50908 -10.20428 -9.49024 -8.58528 -6.34376 1.24648 1.53793 1.59375 1.75948 1.77822 2.39080 2.55744 3.17146 3.61046 3.67190 3.82715 3.98447 4.05906 4.16021 4.22938 4.30539 4.33413 4.40596 4.44691 4.51045 4.57024 4.62071 4.64788 4.67954 4.73689 4.86057 4.87720 4.93956 5.00213 5.08535 5.14440 5.15280 5.19950 5.29881 5.32154 5.39278 5.39755 5.53203 5.59958 5.64432 5.66885 5.81643 5.87117 6.16464 6.53103 6.65296 7.30635 7.42870 8.76351 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.007844 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.911842 B = 3568.562786 C = 4859.570455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.176 4.176 3 C 0.144 3.856 4 N -0.597 5.597 5 C 0.240 3.760 6 C -0.598 4.598 7 H 0.044 0.956 8 C -0.014 4.014 9 N -0.930 5.930 10 Si 1.101 2.899 11 H -0.272 1.272 12 H -0.279 1.279 13 H -0.284 1.284 14 C 0.523 3.477 15 O -0.588 6.588 16 C -0.088 4.088 17 H 0.076 0.924 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.064 4.064 23 H 0.065 0.935 24 C -0.120 4.120 25 C -0.141 4.141 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 6.541 7.121 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.021 3.979 4 N -0.326 5.326 5 C 0.119 3.881 6 C -0.637 4.637 7 H 0.062 0.938 8 C -0.214 4.214 9 N -0.567 5.567 10 Si 0.925 3.075 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.210 1.210 14 C 0.313 3.687 15 O -0.470 6.470 16 C -0.109 4.109 17 H 0.094 0.906 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.145 4.145 22 C -0.083 4.083 23 H 0.083 0.917 24 C -0.158 4.158 25 C -0.198 4.198 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.022 5.465 7.317 10.423 hybrid contribution -0.907 0.916 -0.877 1.560 sum -5.930 6.381 6.440 10.833 Atomic orbital electron populations 1.23901 0.95074 1.02477 0.99278 1.23251 0.96688 0.98569 1.01016 1.20523 0.92298 0.95741 0.89303 1.48132 1.12704 1.62201 1.09591 1.19251 0.78084 0.94865 0.95927 1.22346 0.97283 0.97332 1.46693 0.93777 1.26802 0.91817 1.08534 0.94270 1.70895 1.31834 1.12450 1.41501 0.83101 0.75983 0.71250 0.77190 1.19701 1.20448 1.20972 1.20907 0.88749 0.75067 0.83940 1.90540 1.19890 1.53097 1.83451 1.21263 0.97970 0.98062 0.93591 0.90562 1.21447 0.99486 0.96320 0.97169 1.21475 0.98141 0.99412 0.95903 1.21544 1.02099 0.93689 0.97778 1.21628 0.98465 0.98551 0.95895 1.21016 0.99830 0.92175 0.95261 0.91693 1.21560 1.00605 0.95376 0.98269 1.21720 1.01167 0.96752 1.00162 0.87059 0.88038 0.88679 0.90539 0.89677 0.96014 0.96797 0.93038 0.93049 0.91955 0.92814 0.91098 0.90001 0.91732 0.92156 0.89461 0.92296 0.94629 0.93114 0.90875 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 14.32 67.78 0.97 -4.38 16 2 C -0.18 -6.56 9.83 25.65 0.25 -6.30 16 3 C 0.14 5.50 5.83 85.63 0.50 6.00 16 4 N -0.60 -25.76 2.46 -830.51 -2.04 -27.80 16 5 C 0.24 11.37 4.31 85.63 0.37 11.74 16 6 C -0.60 -30.66 7.59 25.60 0.19 -30.46 16 7 H 0.04 2.36 7.34 -2.91 -0.02 2.34 16 8 C -0.01 -0.74 5.46 84.65 0.46 -0.28 16 9 N -0.93 -52.15 13.65 21.45 0.29 -51.85 16 10 Si 1.10 47.74 29.90 68.60 2.05 49.79 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.52 22.32 5.50 87.66 0.48 22.80 16 15 O -0.59 -26.80 15.37 -3.02 -0.05 -26.85 16 16 C -0.09 -3.31 1.50 -11.54 -0.02 -3.33 16 17 H 0.08 3.11 5.83 -2.39 -0.01 3.10 16 18 C -0.11 -3.95 5.18 30.59 0.16 -3.80 16 19 C -0.11 -3.39 5.92 30.59 0.18 -3.21 16 20 C -0.11 -2.75 5.92 30.60 0.18 -2.56 16 21 C -0.11 -2.67 4.96 30.61 0.15 -2.52 16 22 C -0.06 -1.98 1.40 -10.78 -0.02 -2.00 16 23 H 0.06 2.18 7.86 -2.38 -0.02 2.16 16 24 C -0.12 -3.56 5.22 30.59 0.16 -3.40 16 25 C -0.14 -3.21 9.67 71.98 0.70 -2.52 16 26 H 0.11 3.04 8.06 -2.91 -0.02 3.01 16 27 H 0.10 3.02 7.84 -2.91 -0.02 2.99 16 28 H 0.10 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.08 2.83 7.22 -2.38 -0.02 2.81 16 30 H 0.09 3.03 7.81 -2.39 -0.02 3.01 16 31 H 0.02 1.07 5.80 -2.39 -0.01 1.06 16 32 H 0.01 0.69 7.66 -2.39 -0.02 0.67 16 33 H 0.26 14.56 7.22 -92.70 -0.67 13.89 16 34 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.06 2.71 5.74 -2.39 -0.01 2.70 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.75 6.57 -2.38 -0.02 1.73 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.03 1.23 6.66 -2.39 -0.02 1.22 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.39 6.57 -2.39 -0.02 1.38 16 46 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -59.69 354.84 6.00 -53.69 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.02 Total: 27.25 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.73 Total: -24.22 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -1.75 Total: -79.66 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.05 Total: 49.79 kcal Total: -59.69 6.00 -53.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.454 kcal (2) G-P(sol) polarization free energy of solvation -59.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds