Wall clock time and date at job start Tue Mar 31 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99652 * 2 1 4 4 N 1.46504 * 109.46788 * 124.53522 * 3 2 1 5 5 C 1.46498 * 120.00202 * 85.06071 * 4 3 2 6 6 C 1.50693 * 109.47091 * 89.99827 * 5 4 3 7 7 H 1.08003 * 120.00237 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00090 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00028 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46875 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47032 * 299.99947 * 10 8 6 13 13 H 1.48500 * 109.46820 * 59.99941 * 10 8 6 14 14 C 1.34782 * 119.99668 * 265.06068 * 4 3 2 15 15 O 1.21278 * 119.99487 * 184.93016 * 14 4 3 16 16 C 1.50699 * 120.00316 * 4.93338 * 14 4 3 17 17 H 1.09004 * 110.01250 * 27.00520 * 16 14 4 18 18 C 1.54263 * 110.03464 * 148.40349 * 16 14 4 19 19 C 1.54963 * 104.16250 * 142.86338 * 18 16 14 20 20 C 1.54895 * 102.77440 * 322.11202 * 19 18 16 21 21 C 1.53875 * 110.02867 * 265.62221 * 16 14 4 22 22 H 1.08997 * 110.03540 * 121.43145 * 21 16 14 23 23 C 1.52996 * 110.03749 * 0.04433 * 21 16 14 24 24 C 1.53000 * 109.47412 * 175.06851 * 23 21 16 25 25 C 1.52997 * 109.46907 * 180.02562 * 24 23 21 26 26 H 1.08002 * 120.00005 * 355.10719 * 1 2 3 27 27 H 1.07995 * 119.99954 * 175.11516 * 1 2 3 28 28 H 1.07997 * 119.99820 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47485 * 4.53598 * 3 2 1 30 30 H 1.08997 * 109.47168 * 244.53165 * 3 2 1 31 31 H 1.09006 * 109.46857 * 329.99896 * 5 4 3 32 32 H 1.08996 * 109.46864 * 210.00314 * 5 4 3 33 33 H 0.97005 * 120.00085 * 180.02562 * 9 8 6 34 34 H 1.09004 * 110.48264 * 261.57328 * 18 16 14 35 35 H 1.09004 * 110.48347 * 24.21120 * 18 16 14 36 36 H 1.08993 * 110.76885 * 203.77887 * 19 18 16 37 37 H 1.08995 * 110.87668 * 80.49786 * 19 18 16 38 38 H 1.08999 * 110.48436 * 279.23432 * 20 19 18 39 39 H 1.09001 * 110.48378 * 156.59439 * 20 19 18 40 40 H 1.09002 * 109.46940 * 295.07330 * 23 21 16 41 41 H 1.09010 * 109.46660 * 55.06835 * 23 21 16 42 42 H 1.09001 * 109.46955 * 300.00319 * 24 23 21 43 43 H 1.09000 * 109.46706 * 60.00450 * 24 23 21 44 44 H 1.08994 * 109.47407 * 60.00188 * 25 24 23 45 45 H 1.09005 * 109.47197 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47438 * 299.99857 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9858 1.3365 1.1379 5 6 4.3151 0.7321 1.0202 6 6 5.2937 1.7640 0.5219 7 1 4.9591 2.7696 0.3140 8 6 6.6164 1.4243 0.3313 9 7 7.0238 0.1997 0.5840 10 14 7.8297 2.7037 -0.2857 11 1 9.1769 2.0906 -0.4062 12 1 7.3919 3.2006 -1.6148 13 1 7.8847 3.8366 0.6728 14 6 2.6112 1.9215 2.2929 15 8 3.4045 2.0270 3.2042 16 6 1.2068 2.4442 2.4521 17 1 0.5259 1.8859 1.8095 18 6 0.7620 2.3244 3.9243 19 6 -0.0820 3.6005 4.1705 20 6 0.6859 4.6793 3.3669 21 6 1.1582 3.9408 2.0975 22 1 0.4529 4.1089 1.2836 23 6 2.5506 4.4292 1.6932 24 6 2.4652 5.8837 1.2263 25 6 3.8575 6.3719 0.8215 26 1 -0.5400 0.9319 0.0798 27 1 -0.5400 -0.9319 -0.0796 28 1 1.8500 -0.9353 -0.0004 29 1 1.3580 2.1320 0.0813 30 1 2.6279 1.3989 -0.9278 31 1 4.2749 -0.1000 0.3172 32 1 4.6363 0.3681 1.9961 33 1 7.9544 -0.0391 0.4503 34 1 0.1545 1.4307 4.0677 35 1 1.6291 2.3074 4.5846 36 1 -0.1034 3.8511 5.2310 37 1 -1.0936 3.4777 3.7836 38 1 1.5407 5.0431 3.9369 39 1 0.0226 5.5034 3.1043 40 1 3.2221 4.3612 2.5491 41 1 2.9318 3.8089 0.8820 42 1 1.7936 5.9517 0.3704 43 1 2.0839 6.5039 2.0375 44 1 4.2384 5.7516 0.0102 45 1 3.7969 7.4083 0.4892 46 1 4.5294 6.3038 1.6771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295360809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:36 Heat of formation + Delta-G solvation = -44.751034 kcal Electronic energy + Delta-G solvation = -23623.669173 eV Core-core repulsion = 20512.631897 eV Total energy + Delta-G solvation = -3111.037276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09381 -37.19751 -35.60219 -34.18346 -33.18744 -32.00073 -29.73671 -29.08865 -27.23271 -25.50547 -24.80399 -23.06467 -21.45636 -20.44517 -20.25099 -19.60034 -17.72873 -16.58615 -16.40180 -15.66600 -15.29848 -14.79781 -14.71485 -14.40437 -13.92368 -13.77642 -13.45027 -13.02623 -12.90474 -12.62897 -12.32124 -11.99978 -11.71919 -11.59585 -11.45506 -11.13600 -11.09999 -10.99765 -10.90009 -10.83988 -10.68029 -10.52864 -10.43636 -10.41915 -10.19222 -10.12362 -9.96774 -9.61256 -9.26181 -8.69162 -8.40084 -7.60313 -6.01151 -4.05096 2.41701 3.32759 3.37342 3.39677 3.50636 4.06200 4.47108 4.68754 4.79420 4.87917 5.17792 5.23801 5.30109 5.32242 5.35155 5.42838 5.48506 5.64229 5.65709 5.68082 5.72050 5.79387 5.80634 5.93260 6.02691 6.05512 6.09288 6.11099 6.15073 6.18566 6.29216 6.36446 6.38226 6.51916 6.58130 6.66411 6.77431 6.82390 6.90039 7.13423 7.47965 7.60455 7.95859 8.27508 8.49320 8.94929 9.18871 9.59809 11.06959 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.007064 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.693637 B = 3962.569229 C = 4999.091591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.134 3.866 4 N -0.597 5.597 5 C 0.247 3.753 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.287 1.287 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.521 3.479 15 O -0.538 6.538 16 C -0.117 4.117 17 H 0.085 0.915 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.074 4.074 22 H 0.071 0.929 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.153 4.153 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 6.380 0.467 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C 0.010 3.990 4 N -0.328 5.328 5 C 0.128 3.872 6 C -0.560 4.560 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.213 1.213 12 H -0.203 1.203 13 H -0.201 1.201 14 C 0.308 3.692 15 O -0.416 6.416 16 C -0.139 4.139 17 H 0.104 0.896 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.093 4.093 22 H 0.089 0.911 23 C -0.166 4.166 24 C -0.154 4.154 25 C -0.211 4.211 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.851 6.306 0.936 16.161 hybrid contribution 0.751 0.473 -0.563 1.051 sum -14.100 6.778 0.373 15.649 Atomic orbital electron populations 1.23741 0.95721 1.01477 1.02992 1.23571 0.96074 1.00023 0.97612 1.20630 0.92478 0.94144 0.91719 1.48227 1.16840 1.56730 1.11001 1.19236 0.76579 0.93172 0.98183 1.21388 0.93418 0.97169 1.43980 0.92397 1.24913 0.98130 0.95364 0.95622 1.69920 1.16704 1.17997 1.48916 0.86632 0.80239 0.81785 0.79240 1.21250 1.20285 1.20149 1.20116 0.88840 0.77725 0.82494 1.90642 1.53807 1.56561 1.40557 1.22141 0.95737 0.97146 0.98841 0.89635 1.22348 1.00218 0.97342 0.95089 1.22475 0.98347 0.95352 0.99800 1.22438 0.99667 0.97299 0.95947 1.21661 0.97618 0.92351 0.97649 0.91067 1.21992 0.95966 0.95826 1.02862 1.21479 0.97159 0.96554 1.00211 1.21767 0.97280 1.00092 1.01936 0.88804 0.88737 0.87082 0.90927 0.89234 0.95231 0.94157 0.92762 0.91974 0.89670 0.91738 0.91884 0.91222 0.91993 0.90601 0.90569 0.92691 0.92521 0.92425 0.93419 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 13.61 29.01 0.39 -1.98 16 2 C -0.15 -2.22 9.66 -36.03 -0.35 -2.57 16 3 C 0.13 2.20 5.12 -5.19 -0.03 2.17 16 4 N -0.60 -12.44 1.99 -176.44 -0.35 -12.80 16 5 C 0.25 6.41 5.14 -5.20 -0.03 6.38 16 6 C -0.52 -14.54 9.39 -34.44 -0.32 -14.87 16 7 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.52 10.71 4.51 -10.98 -0.05 10.66 16 15 O -0.54 -13.43 14.62 5.56 0.08 -13.34 16 16 C -0.12 -1.81 2.38 -90.66 -0.22 -2.02 16 17 H 0.09 1.19 5.36 -51.93 -0.28 0.91 16 18 C -0.11 -1.61 6.32 -25.03 -0.16 -1.76 16 19 C -0.12 -1.40 6.91 -24.70 -0.17 -1.57 16 20 C -0.12 -1.41 5.53 -25.07 -0.14 -1.55 16 21 C -0.07 -1.02 2.56 -89.50 -0.23 -1.25 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 23 C -0.13 -2.11 3.40 -26.73 -0.09 -2.20 16 24 C -0.12 -1.59 5.79 -26.73 -0.15 -1.74 16 25 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 26 H 0.09 0.98 7.47 -52.49 -0.39 0.59 16 27 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.07 1.03 5.78 -51.93 -0.30 0.73 16 30 H 0.09 1.53 8.11 -51.93 -0.42 1.10 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 1.19 7.49 -51.93 -0.39 0.80 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.45 6.90 -51.93 -0.36 1.09 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.48 7.08 -51.93 -0.37 1.12 16 41 H 0.08 1.43 6.35 -51.92 -0.33 1.10 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.70 7.51 -51.93 -0.39 0.31 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -31.18 359.66 -8.64 -39.82 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.23 Total: 2.45 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.27 Total: -12.51 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.38 Total: -38.72 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.18 -8.64 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295360809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.936 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds