Wall clock time and date at job start Tue Mar 31 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99652 * 2 1 4 4 N 1.46504 * 109.46788 * 124.53522 * 3 2 1 5 5 C 1.46498 * 120.00202 * 85.06071 * 4 3 2 6 6 C 1.50693 * 109.47091 * 89.99827 * 5 4 3 7 7 H 1.08003 * 120.00237 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00090 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00028 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46875 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47032 * 299.99947 * 10 8 6 13 13 H 1.48500 * 109.46820 * 59.99941 * 10 8 6 14 14 C 1.34782 * 119.99668 * 265.06068 * 4 3 2 15 15 O 1.21278 * 119.99487 * 184.93016 * 14 4 3 16 16 C 1.50699 * 120.00316 * 4.93338 * 14 4 3 17 17 H 1.09004 * 110.01250 * 27.00520 * 16 14 4 18 18 C 1.54263 * 110.03464 * 148.40349 * 16 14 4 19 19 C 1.54963 * 104.16250 * 142.86338 * 18 16 14 20 20 C 1.54895 * 102.77440 * 322.11202 * 19 18 16 21 21 C 1.53875 * 110.02867 * 265.62221 * 16 14 4 22 22 H 1.08997 * 110.03540 * 121.43145 * 21 16 14 23 23 C 1.52996 * 110.03749 * 0.04433 * 21 16 14 24 24 C 1.53000 * 109.47412 * 175.06851 * 23 21 16 25 25 C 1.52997 * 109.46907 * 180.02562 * 24 23 21 26 26 H 1.08002 * 120.00005 * 355.10719 * 1 2 3 27 27 H 1.07995 * 119.99954 * 175.11516 * 1 2 3 28 28 H 1.07997 * 119.99820 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47485 * 4.53598 * 3 2 1 30 30 H 1.08997 * 109.47168 * 244.53165 * 3 2 1 31 31 H 1.09006 * 109.46857 * 329.99896 * 5 4 3 32 32 H 1.08996 * 109.46864 * 210.00314 * 5 4 3 33 33 H 0.97005 * 120.00085 * 180.02562 * 9 8 6 34 34 H 1.09004 * 110.48264 * 261.57328 * 18 16 14 35 35 H 1.09004 * 110.48347 * 24.21120 * 18 16 14 36 36 H 1.08993 * 110.76885 * 203.77887 * 19 18 16 37 37 H 1.08995 * 110.87668 * 80.49786 * 19 18 16 38 38 H 1.08999 * 110.48436 * 279.23432 * 20 19 18 39 39 H 1.09001 * 110.48378 * 156.59439 * 20 19 18 40 40 H 1.09002 * 109.46940 * 295.07330 * 23 21 16 41 41 H 1.09010 * 109.46660 * 55.06835 * 23 21 16 42 42 H 1.09001 * 109.46955 * 300.00319 * 24 23 21 43 43 H 1.09000 * 109.46706 * 60.00450 * 24 23 21 44 44 H 1.08994 * 109.47407 * 60.00188 * 25 24 23 45 45 H 1.09005 * 109.47197 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47438 * 299.99857 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9858 1.3365 1.1379 5 6 4.3151 0.7321 1.0202 6 6 5.2937 1.7640 0.5219 7 1 4.9591 2.7696 0.3140 8 6 6.6164 1.4243 0.3313 9 7 7.0238 0.1997 0.5840 10 14 7.8297 2.7037 -0.2857 11 1 9.1769 2.0906 -0.4062 12 1 7.3919 3.2006 -1.6148 13 1 7.8847 3.8366 0.6728 14 6 2.6112 1.9215 2.2929 15 8 3.4045 2.0270 3.2042 16 6 1.2068 2.4442 2.4521 17 1 0.5259 1.8859 1.8095 18 6 0.7620 2.3244 3.9243 19 6 -0.0820 3.6005 4.1705 20 6 0.6859 4.6793 3.3669 21 6 1.1582 3.9408 2.0975 22 1 0.4529 4.1089 1.2836 23 6 2.5506 4.4292 1.6932 24 6 2.4652 5.8837 1.2263 25 6 3.8575 6.3719 0.8215 26 1 -0.5400 0.9319 0.0798 27 1 -0.5400 -0.9319 -0.0796 28 1 1.8500 -0.9353 -0.0004 29 1 1.3580 2.1320 0.0813 30 1 2.6279 1.3989 -0.9278 31 1 4.2749 -0.1000 0.3172 32 1 4.6363 0.3681 1.9961 33 1 7.9544 -0.0391 0.4503 34 1 0.1545 1.4307 4.0677 35 1 1.6291 2.3074 4.5846 36 1 -0.1034 3.8511 5.2310 37 1 -1.0936 3.4777 3.7836 38 1 1.5407 5.0431 3.9369 39 1 0.0226 5.5034 3.1043 40 1 3.2221 4.3612 2.5491 41 1 2.9318 3.8089 0.8820 42 1 1.7936 5.9517 0.3704 43 1 2.0839 6.5039 2.0375 44 1 4.2384 5.7516 0.0102 45 1 3.7969 7.4083 0.4892 46 1 4.5294 6.3038 1.6771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295360809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:36 Heat of formation + Delta-G solvation = -61.707295 kcal Electronic energy + Delta-G solvation = -23624.404452 eV Core-core repulsion = 20512.631897 eV Total energy + Delta-G solvation = -3111.772555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53694 -38.54699 -37.17143 -35.36958 -35.07769 -33.63345 -31.01462 -30.34135 -29.01674 -26.91632 -26.05518 -24.99704 -22.57610 -21.82129 -21.38600 -20.76425 -19.21805 -18.57362 -17.98270 -17.16705 -16.72741 -16.32132 -16.07617 -15.73902 -15.40321 -15.14393 -14.59072 -14.37218 -14.34016 -14.12839 -13.83580 -13.47644 -13.33264 -13.11820 -12.89513 -12.75455 -12.62458 -12.45809 -12.22251 -12.17664 -12.13924 -11.89838 -11.75605 -11.68691 -11.59646 -11.40631 -11.28297 -11.21482 -10.65653 -10.50076 -10.23532 -9.39240 -8.22599 -6.36177 1.31504 1.34270 1.36202 1.43333 1.91185 2.33014 2.54295 3.06578 3.53330 3.69694 3.73226 4.00674 4.04576 4.13331 4.18557 4.33808 4.37648 4.48134 4.53735 4.58958 4.63531 4.68310 4.74710 4.80283 4.83246 4.93994 4.99728 5.00991 5.06875 5.09857 5.11839 5.21577 5.24039 5.28056 5.28583 5.36512 5.46325 5.52232 5.59064 5.62056 5.73367 5.83377 5.87232 6.07558 6.71550 6.85829 7.29601 7.56694 8.84318 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.007064 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.693637 B = 3962.569229 C = 4999.091591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C 0.135 3.865 4 N -0.601 5.601 5 C 0.265 3.735 6 C -0.532 4.532 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.278 1.278 12 H -0.259 1.259 13 H -0.279 1.279 14 C 0.514 3.486 15 O -0.597 6.597 16 C -0.108 4.108 17 H 0.112 0.888 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.071 4.071 22 H 0.109 0.891 23 C -0.124 4.124 24 C -0.109 4.109 25 C -0.156 4.156 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.018 0.982 32 H -0.010 1.010 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 8.530 -0.755 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.211 4.211 3 C 0.013 3.987 4 N -0.331 5.331 5 C 0.144 3.856 6 C -0.571 4.571 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.203 1.203 12 H -0.184 1.184 13 H -0.205 1.205 14 C 0.304 3.696 15 O -0.479 6.479 16 C -0.130 4.130 17 H 0.130 0.870 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.089 4.089 22 H 0.127 0.873 23 C -0.162 4.162 24 C -0.146 4.146 25 C -0.214 4.214 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.008 0.992 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.712 8.453 -0.319 20.535 hybrid contribution 1.908 -0.257 -0.157 1.932 sum -16.804 8.196 -0.476 18.702 Atomic orbital electron populations 1.24067 0.94293 1.03643 0.97552 1.23260 0.97161 0.98087 1.02617 1.20814 0.92036 0.96603 0.89207 1.48221 1.15743 1.56208 1.12932 1.18632 0.79482 0.92770 0.94725 1.21643 0.94326 0.97244 1.43860 0.92797 1.25811 1.00073 0.97453 0.95745 1.70046 1.17244 1.19901 1.49836 0.85593 0.77985 0.78854 0.79202 1.20277 1.18351 1.20496 1.21152 0.90758 0.76452 0.81227 1.90607 1.56072 1.58671 1.42500 1.22228 0.91788 0.98581 1.00356 0.87036 1.22383 0.99602 1.00106 0.93410 1.22466 0.98969 0.92764 1.00553 1.22442 0.99578 0.98352 0.94751 1.21772 0.96519 0.90829 0.99815 0.87279 1.21868 0.96819 0.97659 0.99849 1.21459 0.96932 0.94492 1.01738 1.21800 0.97694 1.01482 1.00382 0.86117 0.86732 0.89193 0.87786 0.90771 0.96433 0.99155 0.92533 0.90417 0.93584 0.90905 0.88680 0.93516 0.88613 0.95285 0.93706 0.90072 0.90596 0.94484 0.90640 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 13.61 67.77 0.92 -2.16 16 2 C -0.19 -5.38 9.66 25.64 0.25 -5.13 16 3 C 0.14 4.43 5.12 85.63 0.44 4.87 16 4 N -0.60 -26.41 1.99 -830.51 -1.66 -28.06 16 5 C 0.27 14.87 5.14 85.63 0.44 15.31 16 6 C -0.53 -31.51 9.39 25.60 0.24 -31.27 16 7 H 0.05 3.16 7.62 -2.91 -0.02 3.14 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 10 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 14 C 0.51 22.13 4.51 87.66 0.40 22.52 16 15 O -0.60 -32.35 14.62 -3.02 -0.04 -32.40 16 16 C -0.11 -3.18 2.38 -10.82 -0.03 -3.20 16 17 H 0.11 2.66 5.36 -2.39 -0.01 2.64 16 18 C -0.12 -3.20 6.32 31.69 0.20 -3.00 16 19 C -0.11 -2.11 6.91 31.91 0.22 -1.89 16 20 C -0.11 -2.38 5.53 31.67 0.18 -2.21 16 21 C -0.07 -1.75 2.56 -10.07 -0.03 -1.77 16 22 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 23 C -0.12 -4.06 3.40 30.59 0.10 -3.95 16 24 C -0.11 -2.74 5.79 30.59 0.18 -2.56 16 25 C -0.16 -4.46 9.91 71.98 0.71 -3.75 16 26 H 0.12 1.76 7.47 -2.91 -0.02 1.74 16 27 H 0.11 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.09 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.10 2.67 5.78 -2.39 -0.01 2.66 16 30 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 31 H 0.02 1.01 8.07 -2.38 -0.02 0.99 16 32 H -0.01 -0.63 7.49 -2.39 -0.02 -0.65 16 33 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 34 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.05 1.63 6.90 -2.38 -0.02 1.61 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.20 7.76 -2.39 -0.02 1.18 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.03 1.20 7.08 -2.39 -0.02 1.18 16 41 H 0.04 1.72 6.35 -2.38 -0.02 1.71 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 1.64 7.51 -2.39 -0.02 1.62 16 44 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.16 359.66 6.21 -69.95 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.92 Total: 17.09 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.68 Total: -17.27 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.37 Total: -85.73 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.04 Total: -32.40 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.16 6.21 -69.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295360809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -76.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds