Wall clock time and date at job start Tue Mar 31 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00357 * 2 1 4 4 N 1.46498 * 109.47097 * 124.11638 * 3 2 1 5 5 C 1.46498 * 120.00608 * 264.90733 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00328 * 5 4 3 7 7 H 1.08002 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00088 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00108 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46840 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46985 * 119.99641 * 10 8 6 13 13 H 1.48490 * 109.47188 * 239.99951 * 10 8 6 14 14 C 1.34779 * 119.99537 * 84.91053 * 4 3 2 15 15 O 1.21281 * 120.00143 * 185.15238 * 14 4 3 16 16 C 1.50700 * 120.00162 * 5.15336 * 14 4 3 17 17 H 1.09000 * 110.01859 * 333.07933 * 16 14 4 18 18 C 1.54270 * 110.03129 * 211.64510 * 16 14 4 19 19 C 1.54892 * 104.19043 * 217.10336 * 18 16 14 20 20 C 1.54957 * 102.78192 * 37.91621 * 19 18 16 21 21 C 1.53874 * 110.03690 * 94.47401 * 16 14 4 22 22 H 1.08990 * 110.03235 * 238.62142 * 21 16 14 23 23 C 1.53006 * 110.02824 * 0.02562 * 21 16 14 24 24 C 1.52997 * 109.46898 * 184.70344 * 23 21 16 25 25 C 1.52996 * 109.46947 * 180.02562 * 24 23 21 26 26 H 1.08003 * 119.99643 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00026 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00075 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46892 * 4.12241 * 3 2 1 30 30 H 1.08999 * 109.47425 * 244.12082 * 3 2 1 31 31 H 1.09002 * 109.46347 * 30.00142 * 5 4 3 32 32 H 1.09003 * 109.47027 * 150.00074 * 5 4 3 33 33 H 0.96995 * 120.00276 * 179.97438 * 9 8 6 34 34 H 1.09002 * 110.48451 * 335.77586 * 18 16 14 35 35 H 1.08999 * 110.48550 * 98.29067 * 18 16 14 36 36 H 1.09008 * 110.75234 * 156.25853 * 19 18 16 37 37 H 1.09007 * 110.75502 * 279.43637 * 19 18 16 38 38 H 1.08997 * 110.53284 * 203.43158 * 20 19 18 39 39 H 1.09000 * 110.47825 * 80.76528 * 20 19 18 40 40 H 1.08999 * 109.46730 * 64.70351 * 23 21 16 41 41 H 1.08996 * 109.47404 * 304.70576 * 23 21 16 42 42 H 1.08999 * 109.46772 * 60.00054 * 24 23 21 43 43 H 1.08996 * 109.47282 * 300.00307 * 24 23 21 44 44 H 1.09007 * 109.47274 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47125 * 299.99837 * 25 24 23 46 46 H 1.08999 * 109.47397 * 60.00367 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9786 1.3405 1.1435 5 6 2.5651 1.9839 2.3930 6 6 2.9518 3.4401 2.3602 7 1 3.4555 3.8457 1.4952 8 6 2.6624 4.2545 3.4344 9 7 2.0485 3.7608 4.4874 10 14 3.1422 6.0594 3.3940 11 1 3.8170 6.3635 2.1065 12 1 1.9241 6.8985 3.5254 13 1 4.0676 6.3508 4.5182 14 6 4.2010 0.7813 1.0459 15 8 4.9228 0.7275 2.0191 16 6 4.6711 0.2229 -0.2725 17 1 3.8157 -0.0860 -0.8732 18 6 5.6108 -0.9770 -0.0333 19 6 6.6853 -0.8446 -1.1410 20 6 6.9033 0.6872 -1.2258 21 6 5.4928 1.2805 -1.0301 22 1 5.0361 1.4850 -1.9983 23 6 5.5759 2.5678 -0.2073 24 6 6.2935 3.6472 -1.0201 25 6 6.3771 4.9342 -0.1971 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3576 2.1323 0.0739 30 1 2.6337 1.3954 -0.9246 31 1 1.4844 1.8973 2.5058 32 1 3.0585 1.4958 3.2336 33 1 1.8452 4.3336 5.2433 34 1 6.0698 -0.9113 0.9532 35 1 5.0657 -1.9151 -0.1378 36 1 7.6056 -1.3504 -0.8488 37 1 6.3144 -1.2373 -2.0879 38 1 7.3011 0.9632 -2.2024 39 1 7.5715 1.0218 -0.4323 40 1 6.1298 2.3764 0.7117 41 1 4.5698 2.9072 0.0390 42 1 5.7395 3.8384 -1.9391 43 1 7.2996 3.3078 -1.2664 44 1 6.8880 5.7034 -0.7764 45 1 5.3711 5.2738 0.0495 46 1 6.9314 4.7427 0.7217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295360811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:40 Heat of formation + Delta-G solvation = -44.826251 kcal Electronic energy + Delta-G solvation = -23616.580952 eV Core-core repulsion = 20505.540414 eV Total energy + Delta-G solvation = -3111.040538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06476 -37.19756 -35.55806 -34.13962 -33.15304 -32.01952 -29.69615 -29.10915 -27.27123 -25.39595 -24.77812 -23.05626 -21.41645 -20.50433 -20.12960 -19.66716 -17.68414 -16.57477 -16.30233 -15.77424 -15.30388 -14.75975 -14.60606 -14.49386 -14.14790 -13.61772 -13.38781 -12.99841 -12.73013 -12.49001 -12.31873 -11.95833 -11.75221 -11.57976 -11.42621 -11.18639 -11.09382 -10.95795 -10.89841 -10.81692 -10.63207 -10.56362 -10.45798 -10.39076 -10.23152 -10.07636 -9.89164 -9.54210 -9.17231 -8.71440 -8.41608 -7.59350 -6.02133 -4.06503 2.46022 3.29485 3.37240 3.39816 3.50745 4.07598 4.45835 4.70602 4.80811 4.90750 5.16335 5.28737 5.32051 5.37488 5.40728 5.45900 5.52927 5.62788 5.69808 5.71702 5.74895 5.80304 5.82887 5.97686 6.02824 6.03829 6.13413 6.14602 6.20911 6.21937 6.32518 6.39936 6.43247 6.57618 6.60736 6.73489 6.80564 6.90502 6.93774 7.15528 7.51246 7.62709 7.95990 8.26730 8.49546 8.94438 9.18416 9.58772 11.05995 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.007566 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.245663 B = 3699.739311 C = 5001.267264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.246 3.754 6 C -0.522 4.522 7 H 0.061 0.939 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.522 3.478 15 O -0.542 6.542 16 C -0.117 4.117 17 H 0.085 0.915 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.073 4.073 22 H 0.071 0.929 23 C -0.130 4.130 24 C -0.116 4.116 25 C -0.153 4.153 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -6.288 -14.269 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.079 0.921 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.309 3.691 15 O -0.420 6.420 16 C -0.139 4.139 17 H 0.103 0.897 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.092 4.092 22 H 0.090 0.910 23 C -0.168 4.168 24 C -0.153 4.153 25 C -0.211 4.211 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.178 -6.231 -13.538 15.478 hybrid contribution -0.020 1.026 0.084 1.030 sum 4.158 -5.205 -13.454 15.013 Atomic orbital electron populations 1.23808 0.95844 1.01697 1.00820 1.23477 0.96418 0.99122 0.99680 1.20556 0.93222 0.95114 0.89859 1.48210 1.13536 1.55696 1.15202 1.19260 0.95425 0.92109 0.80499 1.21499 1.38102 0.93954 1.02532 0.92109 1.24915 0.95176 0.98669 0.95262 1.69945 1.41404 1.35832 1.06194 0.86540 0.78196 0.85100 0.78218 1.19564 1.21072 1.20973 1.20101 0.81589 0.77914 0.89463 1.90631 1.54391 1.57913 1.39019 1.22130 0.99221 0.96835 0.95686 0.89702 1.22343 0.96145 0.96018 1.00548 1.22474 0.98670 0.96375 0.98455 1.22451 0.96731 0.94919 1.01256 1.21643 0.95053 0.94494 0.97968 0.91036 1.22019 1.02837 0.93272 0.98655 1.21467 0.99993 0.95484 0.98360 1.21773 1.02343 0.97002 0.99966 0.88316 0.88848 0.87856 0.89523 0.90877 0.95286 0.93923 0.92864 0.89686 0.92054 0.91768 0.91889 0.91997 0.91228 0.90674 0.90082 0.92767 0.92658 0.93550 0.92289 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.01 0.42 -1.99 16 2 C -0.17 -2.42 9.31 -36.03 -0.34 -2.75 16 3 C 0.14 2.24 5.48 -5.20 -0.03 2.21 16 4 N -0.60 -12.43 1.96 -176.43 -0.35 -12.77 16 5 C 0.25 6.40 5.18 -5.20 -0.03 6.38 16 6 C -0.52 -14.42 9.39 -34.44 -0.32 -14.74 16 7 H 0.06 1.65 6.53 -52.49 -0.34 1.31 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.52 10.67 4.47 -10.98 -0.05 10.62 16 15 O -0.54 -13.42 14.53 5.56 0.08 -13.33 16 16 C -0.12 -1.80 2.48 -90.65 -0.22 -2.02 16 17 H 0.08 1.15 5.81 -51.93 -0.30 0.85 16 18 C -0.11 -1.59 6.32 -25.07 -0.16 -1.75 16 19 C -0.12 -1.40 6.91 -24.70 -0.17 -1.57 16 20 C -0.12 -1.44 5.52 -25.03 -0.14 -1.58 16 21 C -0.07 -1.02 2.91 -89.50 -0.26 -1.29 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.13 -2.21 3.40 -26.73 -0.09 -2.30 16 24 C -0.12 -1.66 5.78 -26.73 -0.15 -1.82 16 25 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 26 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 27 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.10 1.42 7.90 -52.49 -0.41 1.00 16 29 H 0.09 1.48 7.68 -51.93 -0.40 1.08 16 30 H 0.07 1.04 6.52 -51.93 -0.34 0.70 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.42 6.90 -51.93 -0.36 1.07 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.95 7.76 -51.93 -0.40 0.54 16 40 H 0.07 1.51 7.06 -51.93 -0.37 1.14 16 41 H 0.08 1.60 5.59 -51.93 -0.29 1.31 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.71 7.50 -51.93 -0.39 0.33 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -31.10 359.62 -8.58 -39.69 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.18 Total: 3.16 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.27 Total: -12.97 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.39 Total: -38.64 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.10 -8.58 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295360811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.138 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds