Wall clock time and date at job start Tue Mar 31 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00357 * 2 1 4 4 N 1.46498 * 109.47097 * 124.11638 * 3 2 1 5 5 C 1.46498 * 120.00608 * 264.90733 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00328 * 5 4 3 7 7 H 1.08002 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00088 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00108 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46840 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46985 * 119.99641 * 10 8 6 13 13 H 1.48490 * 109.47188 * 239.99951 * 10 8 6 14 14 C 1.34779 * 119.99537 * 84.91053 * 4 3 2 15 15 O 1.21281 * 120.00143 * 185.15238 * 14 4 3 16 16 C 1.50700 * 120.00162 * 5.15336 * 14 4 3 17 17 H 1.09000 * 110.01859 * 333.07933 * 16 14 4 18 18 C 1.54270 * 110.03129 * 211.64510 * 16 14 4 19 19 C 1.54892 * 104.19043 * 217.10336 * 18 16 14 20 20 C 1.54957 * 102.78192 * 37.91621 * 19 18 16 21 21 C 1.53874 * 110.03690 * 94.47401 * 16 14 4 22 22 H 1.08990 * 110.03235 * 238.62142 * 21 16 14 23 23 C 1.53006 * 110.02824 * 0.02562 * 21 16 14 24 24 C 1.52997 * 109.46898 * 184.70344 * 23 21 16 25 25 C 1.52996 * 109.46947 * 180.02562 * 24 23 21 26 26 H 1.08003 * 119.99643 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00026 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00075 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46892 * 4.12241 * 3 2 1 30 30 H 1.08999 * 109.47425 * 244.12082 * 3 2 1 31 31 H 1.09002 * 109.46347 * 30.00142 * 5 4 3 32 32 H 1.09003 * 109.47027 * 150.00074 * 5 4 3 33 33 H 0.96995 * 120.00276 * 179.97438 * 9 8 6 34 34 H 1.09002 * 110.48451 * 335.77586 * 18 16 14 35 35 H 1.08999 * 110.48550 * 98.29067 * 18 16 14 36 36 H 1.09008 * 110.75234 * 156.25853 * 19 18 16 37 37 H 1.09007 * 110.75502 * 279.43637 * 19 18 16 38 38 H 1.08997 * 110.53284 * 203.43158 * 20 19 18 39 39 H 1.09000 * 110.47825 * 80.76528 * 20 19 18 40 40 H 1.08999 * 109.46730 * 64.70351 * 23 21 16 41 41 H 1.08996 * 109.47404 * 304.70576 * 23 21 16 42 42 H 1.08999 * 109.46772 * 60.00054 * 24 23 21 43 43 H 1.08996 * 109.47282 * 300.00307 * 24 23 21 44 44 H 1.09007 * 109.47274 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47125 * 299.99837 * 25 24 23 46 46 H 1.08999 * 109.47397 * 60.00367 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9786 1.3405 1.1435 5 6 2.5651 1.9839 2.3930 6 6 2.9518 3.4401 2.3602 7 1 3.4555 3.8457 1.4952 8 6 2.6624 4.2545 3.4344 9 7 2.0485 3.7608 4.4874 10 14 3.1422 6.0594 3.3940 11 1 3.8170 6.3635 2.1065 12 1 1.9241 6.8985 3.5254 13 1 4.0676 6.3508 4.5182 14 6 4.2010 0.7813 1.0459 15 8 4.9228 0.7275 2.0191 16 6 4.6711 0.2229 -0.2725 17 1 3.8157 -0.0860 -0.8732 18 6 5.6108 -0.9770 -0.0333 19 6 6.6853 -0.8446 -1.1410 20 6 6.9033 0.6872 -1.2258 21 6 5.4928 1.2805 -1.0301 22 1 5.0361 1.4850 -1.9983 23 6 5.5759 2.5678 -0.2073 24 6 6.2935 3.6472 -1.0201 25 6 6.3771 4.9342 -0.1971 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3576 2.1323 0.0739 30 1 2.6337 1.3954 -0.9246 31 1 1.4844 1.8973 2.5058 32 1 3.0585 1.4958 3.2336 33 1 1.8452 4.3336 5.2433 34 1 6.0698 -0.9113 0.9532 35 1 5.0657 -1.9151 -0.1378 36 1 7.6056 -1.3504 -0.8488 37 1 6.3144 -1.2373 -2.0879 38 1 7.3011 0.9632 -2.2024 39 1 7.5715 1.0218 -0.4323 40 1 6.1298 2.3764 0.7117 41 1 4.5698 2.9072 0.0390 42 1 5.7395 3.8384 -1.9391 43 1 7.2996 3.3078 -1.2664 44 1 6.8880 5.7034 -0.7764 45 1 5.3711 5.2738 0.0495 46 1 6.9314 4.7427 0.7217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295360811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:39 Heat of formation + Delta-G solvation = -61.457097 kcal Electronic energy + Delta-G solvation = -23617.302119 eV Core-core repulsion = 20505.540414 eV Total energy + Delta-G solvation = -3111.761705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51554 -38.55325 -37.13968 -35.38645 -35.03589 -33.64294 -31.01236 -30.38352 -29.01760 -26.87009 -26.05423 -24.96663 -22.59231 -21.88692 -21.28723 -20.87744 -19.14563 -18.63967 -17.81302 -17.27008 -16.73310 -16.25895 -16.07136 -15.85634 -15.52968 -15.05189 -14.57817 -14.34767 -14.28391 -14.08492 -13.81363 -13.38508 -13.32661 -13.07730 -12.95242 -12.76162 -12.67765 -12.43895 -12.37783 -12.20350 -12.07066 -11.89982 -11.75025 -11.64087 -11.56840 -11.40998 -11.26785 -11.16929 -10.65817 -10.39210 -10.32171 -9.38452 -8.21915 -6.35373 1.31549 1.33012 1.34907 1.46519 1.91359 2.34083 2.55299 3.07870 3.53587 3.70797 3.73819 3.95170 4.10447 4.16128 4.24268 4.34818 4.36423 4.46409 4.49797 4.56574 4.64017 4.69031 4.75170 4.82934 4.85305 4.94069 5.00792 5.01620 5.04789 5.07403 5.11703 5.22568 5.25107 5.28377 5.29537 5.37100 5.45780 5.52923 5.59872 5.64124 5.70190 5.79180 5.97640 6.08624 6.73921 6.85154 7.30749 7.56699 8.85625 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.007566 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.245663 B = 3699.739311 C = 5001.267264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.185 4.185 3 C 0.134 3.866 4 N -0.600 5.600 5 C 0.265 3.735 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.261 1.261 12 H -0.270 1.270 13 H -0.285 1.285 14 C 0.516 3.484 15 O -0.599 6.599 16 C -0.109 4.109 17 H 0.113 0.887 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.070 4.070 22 H 0.106 0.894 23 C -0.125 4.125 24 C -0.108 4.108 25 C -0.155 4.155 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.015 0.985 32 H -0.008 1.008 33 H 0.265 0.735 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -6.487 -18.173 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.204 4.204 3 C 0.012 3.988 4 N -0.330 5.330 5 C 0.143 3.857 6 C -0.568 4.568 7 H 0.079 0.921 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.185 1.185 12 H -0.196 1.196 13 H -0.211 1.211 14 C 0.306 3.694 15 O -0.480 6.480 16 C -0.131 4.131 17 H 0.131 0.869 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.089 4.089 22 H 0.124 0.876 23 C -0.163 4.163 24 C -0.146 4.146 25 C -0.213 4.213 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.033 0.967 32 H 0.010 0.990 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.497 -6.442 -17.492 19.175 hybrid contribution -0.177 1.060 1.361 1.734 sum 4.320 -5.382 -16.131 17.546 Atomic orbital electron populations 1.24046 0.95501 1.02850 0.98284 1.23371 0.96858 0.98274 1.01904 1.20773 0.92806 0.96188 0.89029 1.48185 1.14804 1.55251 1.14730 1.18652 0.93688 0.91552 0.81785 1.21750 1.37698 0.94778 1.02586 0.92146 1.25805 0.95068 1.03358 0.94837 1.70069 1.42545 1.37607 1.06938 0.85515 0.78261 0.79656 0.78391 1.18499 1.19556 1.21125 1.21093 0.80554 0.76810 0.90897 1.90599 1.55799 1.60068 1.41540 1.22224 1.00618 0.97600 0.92619 0.86901 1.22372 0.96929 0.96234 0.99881 1.22465 0.98080 0.95756 0.98501 1.22451 0.95010 0.95524 1.02146 1.21745 0.96474 0.92344 0.98315 0.87632 1.21878 1.00382 0.96017 0.97977 1.21448 1.01152 0.93659 0.98310 1.21797 1.00743 0.98743 1.00003 0.88417 0.86450 0.86780 0.90657 0.88012 0.96713 0.99026 0.92623 0.93469 0.90195 0.90858 0.88820 0.88806 0.93454 0.95194 0.93434 0.90338 0.90544 0.90706 0.94888 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 14.32 67.78 0.97 -3.12 16 2 C -0.18 -5.05 9.31 25.65 0.24 -4.81 16 3 C 0.13 4.34 5.48 85.63 0.47 4.81 16 4 N -0.60 -26.03 1.96 -830.50 -1.63 -27.66 16 5 C 0.26 14.69 5.18 85.63 0.44 15.14 16 6 C -0.53 -30.70 9.39 25.60 0.24 -30.46 16 7 H 0.06 3.44 6.53 -2.91 -0.02 3.42 16 8 C 0.01 0.45 5.46 84.65 0.46 0.92 16 9 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 10 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 C 0.52 21.95 4.47 87.66 0.39 22.34 16 15 O -0.60 -31.97 14.53 -3.03 -0.04 -32.02 16 16 C -0.11 -3.21 2.48 -10.81 -0.03 -3.23 16 17 H 0.11 2.67 5.81 -2.39 -0.01 2.66 16 18 C -0.12 -3.12 6.32 31.67 0.20 -2.92 16 19 C -0.11 -2.14 6.91 31.91 0.22 -1.92 16 20 C -0.11 -2.46 5.52 31.69 0.18 -2.29 16 21 C -0.07 -1.80 2.91 -10.07 -0.03 -1.83 16 22 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 23 C -0.12 -4.24 3.40 30.60 0.10 -4.14 16 24 C -0.11 -2.91 5.78 30.59 0.18 -2.73 16 25 C -0.16 -4.76 9.91 71.98 0.71 -4.05 16 26 H 0.10 2.38 7.84 -2.91 -0.02 2.36 16 27 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.11 2.88 7.90 -2.91 -0.02 2.86 16 29 H 0.07 2.58 7.68 -2.38 -0.02 2.56 16 30 H 0.10 2.66 6.52 -2.39 -0.02 2.64 16 31 H 0.01 0.85 8.07 -2.39 -0.02 0.83 16 32 H -0.01 -0.54 7.36 -2.39 -0.02 -0.56 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 34 H 0.05 1.63 6.90 -2.39 -0.02 1.62 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.24 7.76 -2.39 -0.02 1.22 16 40 H 0.03 1.26 7.06 -2.39 -0.02 1.24 16 41 H 0.05 1.91 5.59 -2.39 -0.01 1.90 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.75 7.50 -2.39 -0.02 1.73 16 44 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -74.50 359.62 6.31 -68.19 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.92 Total: 19.47 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.75 Total: -18.30 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.34 Total: -85.07 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.04 Total: -32.02 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.50 6.31 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295360811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.729 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds