Wall clock time and date at job start Tue Mar 31 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99715 * 2 1 4 4 N 1.46498 * 109.46888 * 124.55447 * 3 2 1 5 5 C 1.46500 * 120.00097 * 267.36178 * 4 3 2 6 6 C 1.50706 * 109.47108 * 270.00315 * 5 4 3 7 7 H 1.07993 * 119.99718 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99557 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00761 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99899 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47206 * 89.99778 * 10 8 6 12 12 H 1.48497 * 109.47187 * 210.00242 * 10 8 6 13 13 H 1.48504 * 109.46570 * 330.00082 * 10 8 6 14 14 C 1.34779 * 120.00381 * 87.36557 * 4 3 2 15 15 O 1.21286 * 119.99688 * 4.98473 * 14 4 3 16 16 C 1.50697 * 120.00468 * 184.98653 * 14 4 3 17 17 H 1.09002 * 110.81483 * 32.74270 * 16 14 4 18 18 C 1.55238 * 110.89842 * 269.29450 * 16 14 4 19 19 C 1.54265 * 104.23067 * 203.79087 * 18 16 14 20 20 C 1.53879 * 106.59954 * 23.61003 * 19 18 16 21 21 C 1.54272 * 106.59735 * 0.02562 * 20 19 18 22 22 H 1.08991 * 110.48462 * 95.06804 * 21 20 19 23 23 C 1.53003 * 110.48482 * 217.58084 * 21 20 19 24 24 C 1.53001 * 109.47022 * 291.75658 * 23 21 20 25 25 C 1.52997 * 109.47166 * 180.02562 * 24 23 21 26 26 H 1.08005 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99988 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00045 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47425 * 4.55449 * 3 2 1 30 30 H 1.08998 * 109.46867 * 244.54875 * 3 2 1 31 31 H 1.08999 * 109.47127 * 30.00156 * 5 4 3 32 32 H 1.08996 * 109.47430 * 150.00400 * 5 4 3 33 33 H 0.96994 * 120.00468 * 179.97438 * 9 8 6 34 34 H 1.08999 * 110.46581 * 85.10144 * 18 16 14 35 35 H 1.08994 * 110.58378 * 322.53558 * 18 16 14 36 36 H 1.08995 * 110.03611 * 264.32677 * 19 18 16 37 37 H 1.08994 * 110.03294 * 142.89101 * 19 18 16 38 38 H 1.09002 * 110.03171 * 240.71909 * 20 19 18 39 39 H 1.08998 * 110.03249 * 119.28218 * 20 19 18 40 40 H 1.08997 * 109.46959 * 51.75460 * 23 21 20 41 41 H 1.08994 * 109.47048 * 171.76102 * 23 21 20 42 42 H 1.09002 * 109.46973 * 300.00640 * 24 23 21 43 43 H 1.09003 * 109.47107 * 59.99739 * 24 23 21 44 44 H 1.09006 * 109.46863 * 299.99719 * 25 24 23 45 45 H 1.08993 * 109.47575 * 59.99900 * 25 24 23 46 46 H 1.08999 * 109.47327 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9860 1.3364 1.1376 5 6 2.5614 1.9270 2.4092 6 6 2.8990 3.3958 2.4185 7 1 3.3812 3.8443 1.5626 8 6 2.5912 4.1668 3.5192 9 7 2.0035 3.6206 4.5612 10 14 3.0090 5.9875 3.5305 11 1 1.8673 6.7608 2.9796 12 1 3.2769 6.4252 4.9240 13 1 4.2151 6.2237 2.6969 14 6 4.2256 0.8218 1.0143 15 8 4.6091 0.4151 -0.0621 16 6 5.1351 0.7515 2.2138 17 1 4.5613 0.5873 3.1259 18 6 5.9981 2.0367 2.3304 19 6 7.2301 1.5934 3.1461 20 6 7.3598 0.0720 2.9549 21 6 6.2024 -0.3560 2.0291 22 1 6.5374 -0.3948 0.9927 23 6 5.6448 -1.7136 2.4616 24 6 6.6881 -2.8010 2.1972 25 6 6.1304 -4.1587 2.6291 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3580 2.1320 0.0816 30 1 2.6276 1.3990 -0.9279 31 1 1.4851 1.8009 2.5269 32 1 3.0774 1.4304 3.2308 33 1 1.7873 4.1630 5.3357 34 1 5.4507 2.8167 2.8596 35 1 6.2999 2.3864 1.3432 36 1 7.0831 1.8259 4.2008 37 1 8.1240 2.0939 2.7741 38 1 7.2756 -0.4337 3.9168 39 1 8.3166 -0.1656 2.4901 40 1 5.4090 -1.6873 3.5254 41 1 4.7403 -1.9323 1.8941 42 1 6.9241 -2.8272 1.1334 43 1 7.5927 -2.5823 2.7646 44 1 5.8942 -4.1327 3.6930 45 1 5.2260 -4.3772 2.0614 46 1 6.8738 -4.9334 2.4412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295360812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:44 Heat of formation + Delta-G solvation = -52.246264 kcal Electronic energy + Delta-G solvation = -23114.005171 eV Core-core repulsion = 20002.642878 eV Total energy + Delta-G solvation = -3111.362294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68035 -37.41408 -35.32007 -34.27849 -33.40231 -32.11591 -29.48845 -28.90879 -27.42519 -25.53399 -24.67750 -22.94299 -21.45869 -20.89859 -19.56765 -19.25995 -18.05294 -16.60729 -16.33088 -15.66649 -15.13297 -14.69887 -14.60280 -14.47743 -14.26102 -13.57908 -13.24287 -12.96698 -12.67745 -12.55360 -12.31162 -12.23502 -12.03883 -11.51994 -11.47351 -11.23435 -11.13239 -10.99872 -10.87715 -10.80875 -10.74215 -10.61164 -10.25444 -10.11429 -10.07504 -9.99658 -9.91159 -9.71052 -9.16825 -8.81015 -8.50653 -7.69617 -6.17494 -4.23841 2.57991 3.22156 3.29837 3.32465 3.46588 4.09001 4.34650 4.84573 4.99952 5.06686 5.15378 5.20721 5.28196 5.37231 5.38408 5.55429 5.64997 5.71389 5.84220 5.89528 5.91437 5.92492 6.02005 6.03829 6.05841 6.13497 6.20447 6.21449 6.25085 6.32411 6.36980 6.40517 6.48115 6.55444 6.72865 6.76694 6.91185 6.93571 6.94122 7.07911 7.24400 7.59196 7.77992 8.07872 8.39057 8.81633 9.08739 9.43164 10.89192 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.006511 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.744457 B = 4299.618446 C = 5671.208590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C 0.142 3.858 4 N -0.592 5.592 5 C 0.237 3.763 6 C -0.532 4.532 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.526 3.474 15 O -0.576 6.576 16 C -0.100 4.100 17 H 0.099 0.901 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.078 4.078 22 H 0.086 0.914 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.152 4.152 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -8.619 -2.253 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.019 3.981 4 N -0.322 5.322 5 C 0.118 3.882 6 C -0.570 4.570 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.315 3.685 15 O -0.457 6.457 16 C -0.121 4.121 17 H 0.117 0.883 18 C -0.144 4.144 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.097 4.097 22 H 0.104 0.896 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.209 4.209 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.602 -8.762 -2.598 10.720 hybrid contribution -0.046 1.094 0.237 1.120 sum 5.557 -7.669 -2.361 9.760 Atomic orbital electron populations 1.23758 0.95777 1.01494 1.02155 1.23395 0.96053 0.99354 0.98473 1.20388 0.92422 0.94569 0.90699 1.48227 1.12132 1.57332 1.14486 1.19462 0.96387 0.93120 0.79271 1.21467 1.40026 0.93611 1.01927 0.92113 1.24908 0.94862 0.98614 0.95296 1.69918 1.41092 1.36269 1.05657 0.86583 0.78989 0.85100 0.77368 1.20584 1.21080 1.19689 1.20384 0.81973 0.76472 0.89676 1.90558 1.75262 1.50910 1.28991 1.22272 0.95515 0.96849 0.97476 0.88333 1.22316 0.94843 0.96890 1.00373 1.22127 0.98109 0.95411 1.00402 1.22198 0.97962 0.95992 0.99238 1.21948 0.94254 0.93069 1.00420 0.89608 1.21629 0.98314 0.93877 1.00968 1.21516 0.98711 0.94442 1.01267 1.21779 1.00809 0.97089 1.01248 0.88470 0.88970 0.87956 0.89985 0.90341 0.94849 0.94138 0.92571 0.88877 0.92144 0.91814 0.92333 0.91991 0.92344 0.92101 0.92219 0.92190 0.92142 0.92892 0.92890 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 14.32 29.01 0.42 -2.44 16 2 C -0.15 -2.59 9.83 -36.02 -0.35 -2.94 16 3 C 0.14 2.71 5.86 -5.19 -0.03 2.68 16 4 N -0.59 -12.57 2.44 -176.43 -0.43 -13.00 16 5 C 0.24 5.58 5.04 -5.19 -0.03 5.56 16 6 C -0.53 -13.48 8.31 -34.44 -0.29 -13.76 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 10 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.53 11.02 6.84 -10.99 -0.08 10.94 16 15 O -0.58 -13.01 15.41 5.55 0.09 -12.93 16 16 C -0.10 -1.85 1.97 -89.58 -0.18 -2.03 16 17 H 0.10 1.90 6.09 -51.93 -0.32 1.59 16 18 C -0.11 -1.93 6.27 -24.88 -0.16 -2.08 16 19 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 20 C -0.12 -1.59 5.59 -25.61 -0.14 -1.73 16 21 C -0.08 -1.23 2.16 -88.94 -0.19 -1.42 16 22 H 0.09 1.49 7.24 -51.93 -0.38 1.11 16 23 C -0.11 -1.57 4.60 -26.73 -0.12 -1.69 16 24 C -0.12 -1.46 5.79 -26.73 -0.15 -1.62 16 25 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 26 H 0.10 1.39 7.84 -52.48 -0.41 0.97 16 27 H 0.09 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 30 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 0.99 5.80 -51.93 -0.30 0.68 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.09 1.90 7.04 -51.93 -0.37 1.53 16 35 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.67 7.55 -51.93 -0.39 0.28 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -27.37 366.71 -8.69 -36.06 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.38 Total: 4.68 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.21 Total: -12.17 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.31 Total: -36.42 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.37 -8.69 -36.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295360812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.191 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds