Wall clock time and date at job start Tue Mar 31 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47026 * 2 1 4 4 N 1.46496 * 109.47307 * 120.00422 * 2 1 3 5 5 C 1.46505 * 119.99619 * 299.99864 * 4 2 1 6 6 C 1.50703 * 109.47064 * 90.00051 * 5 4 2 7 7 H 1.07996 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99923 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47093 * 90.00088 * 10 8 6 12 12 H 1.48500 * 109.47049 * 210.00797 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00185 * 10 8 6 14 14 C 1.34774 * 120.00119 * 119.99688 * 4 2 1 15 15 O 1.21291 * 119.99579 * 180.02562 * 14 4 2 16 16 C 1.50697 * 120.00055 * 0.02562 * 14 4 2 17 17 H 1.08992 * 109.47134 * 59.99783 * 16 14 4 18 18 C 1.53003 * 109.46810 * 299.99681 * 16 14 4 19 19 C 1.53003 * 109.46918 * 240.00036 * 18 16 14 20 20 C 1.52998 * 109.47205 * 300.00415 * 19 18 16 21 21 C 1.52992 * 109.47188 * 59.99879 * 20 19 18 22 22 C 1.53000 * 109.47538 * 0.02562 * 21 20 19 23 23 C 1.52997 * 109.47036 * 59.99749 * 22 21 20 24 24 C 1.53003 * 109.46812 * 60.00462 * 19 18 16 25 25 H 1.09001 * 109.47158 * 299.99976 * 1 2 3 26 26 H 1.09009 * 109.47080 * 59.99821 * 1 2 3 27 27 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46720 * 240.00316 * 2 1 3 29 29 H 1.09003 * 109.46709 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47024 * 299.99680 * 3 2 1 31 31 H 1.08995 * 109.46705 * 60.00048 * 3 2 1 32 32 H 1.09002 * 109.47068 * 210.00020 * 5 4 2 33 33 H 1.09001 * 109.47372 * 330.00108 * 5 4 2 34 34 H 0.97000 * 119.99684 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47245 * 359.97438 * 18 16 14 36 36 H 1.08992 * 109.46922 * 120.00238 * 18 16 14 37 37 H 1.08995 * 109.47003 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.46735 * 299.99756 * 20 19 18 39 39 H 1.08999 * 109.46972 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47228 * 239.99833 * 21 20 19 41 41 H 1.09002 * 109.46952 * 120.00413 * 21 20 19 42 42 H 1.08995 * 109.47183 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47317 * 60.00336 * 23 22 21 44 44 H 1.09000 * 109.47593 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47845 * 60.00007 * 24 19 18 46 46 H 1.09010 * 109.46969 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 0.3830 -0.8389 2.9829 7 1 -0.1179 -1.5522 2.3453 8 6 -0.1505 -0.5208 4.2139 9 7 -1.2685 -1.0873 4.6122 10 14 0.7155 0.7136 5.3165 11 1 0.2113 2.0791 5.0224 12 1 0.4458 0.3818 6.7385 13 1 2.1782 0.6613 5.0649 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0627 16 6 3.1576 -2.3010 -0.2964 17 1 3.7028 -1.5301 -0.8410 18 6 1.8828 -2.6613 -1.0618 19 6 1.9125 -4.1457 -1.4318 20 6 3.1324 -4.4278 -2.3111 21 6 4.4071 -4.0674 -1.5456 22 6 4.0372 -3.5456 -0.1558 23 6 3.2722 -4.6280 0.6084 24 6 1.9970 -4.9874 -0.1569 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.4629 -0.4294 3.2291 33 1 1.5295 0.8906 2.4844 34 1 -1.6440 -0.8633 5.4781 35 1 1.0138 -2.4608 -0.4352 36 1 1.8226 -2.0617 -1.9700 37 1 1.0041 -4.4025 -1.9767 38 1 3.0721 -3.8281 -3.2193 39 1 3.1533 -5.4851 -2.5750 40 1 4.9523 -3.2966 -2.0903 41 1 5.0337 -4.9537 -1.4457 42 1 4.9453 -3.2884 0.3893 43 1 3.8990 -5.5142 0.7081 44 1 3.0082 -4.2562 1.5984 45 1 1.1280 -4.7865 0.4695 46 1 2.0177 -6.0449 -0.4205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310826921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:45 Heat of formation + Delta-G solvation = -73.608096 kcal Electronic energy + Delta-G solvation = -24190.650838 eV Core-core repulsion = 21078.362226 eV Total energy + Delta-G solvation = -3112.288612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16625 -39.73025 -37.60031 -34.91919 -32.65941 -32.50151 -32.20263 -31.59946 -29.63932 -27.98267 -25.18704 -23.96014 -23.37228 -22.77416 -22.39761 -19.65968 -19.07486 -18.33971 -17.54670 -17.39492 -16.94902 -16.43990 -16.14121 -15.86051 -15.16616 -14.90456 -14.56333 -14.17220 -14.01954 -13.75651 -13.55166 -13.38795 -13.00104 -12.93821 -12.91005 -12.89176 -12.84131 -12.75866 -12.71288 -12.56219 -12.31955 -12.17098 -11.96465 -11.67207 -11.51071 -11.46041 -11.10223 -10.79852 -10.74069 -10.65051 -10.13993 -9.32608 -8.31592 -6.33118 1.27543 1.32436 1.42641 1.87528 2.30211 2.36723 3.02110 3.50797 3.64273 3.74798 3.94225 4.05242 4.25441 4.29210 4.36575 4.37780 4.43447 4.46120 4.49447 4.55722 4.60876 4.65205 4.72318 4.75700 4.86918 4.89205 4.91077 4.98369 5.03943 5.08650 5.14493 5.18399 5.25075 5.33271 5.40458 5.42181 5.47966 5.50440 5.55314 5.60131 5.63382 5.64451 5.78104 6.29670 6.67190 6.82504 7.26036 7.53349 8.85223 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.006157 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.427010 B = 4546.344629 C = 4921.719618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.122 3.878 3 C -0.159 4.159 4 N -0.594 5.594 5 C 0.226 3.774 6 C -0.514 4.514 7 H 0.032 0.968 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.939 3.061 11 H -0.252 1.252 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.499 3.501 15 O -0.589 6.589 16 C -0.092 4.092 17 H 0.119 0.881 18 C -0.108 4.108 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.105 4.105 22 C -0.062 4.062 23 C -0.127 4.127 24 C -0.114 4.114 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.011 0.989 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.043 0.957 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.023 0.977 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -0.121 -19.195 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.217 4.217 4 N -0.325 5.325 5 C 0.104 3.896 6 C -0.553 4.553 7 H 0.050 0.950 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.763 3.237 11 H -0.176 1.176 12 H -0.209 1.209 13 H -0.185 1.185 14 C 0.289 3.711 15 O -0.470 6.470 16 C -0.113 4.113 17 H 0.137 0.863 18 C -0.146 4.146 19 C -0.101 4.101 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.081 4.081 23 C -0.165 4.165 24 C -0.152 4.152 25 H 0.060 0.940 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.986 -0.390 -18.544 21.065 hybrid contribution -0.451 0.197 1.845 1.909 sum 9.535 -0.193 -16.699 19.230 Atomic orbital electron populations 1.22083 0.95351 1.01140 1.02261 1.21559 0.94580 0.94365 0.87570 1.22165 1.01466 0.94933 1.03119 1.48116 1.48990 1.27882 1.07502 1.19189 0.93932 0.94641 0.81849 1.21492 1.07007 1.24398 1.02371 0.94986 1.25768 0.95462 0.98449 0.99091 1.70049 1.21666 1.45465 1.21567 0.85836 0.79770 0.80016 0.78124 1.17638 1.20942 1.18454 1.21493 0.77705 0.79483 0.92422 1.90564 1.56594 1.57635 1.42225 1.21385 0.99029 0.99215 0.91653 0.86284 1.21780 0.94991 0.97623 1.00165 1.21060 0.99928 0.93709 0.95439 1.21528 0.92618 1.02240 0.97782 1.21536 0.97934 1.01514 0.93245 1.20772 0.96721 0.93170 0.97446 1.21696 0.96931 0.98406 0.99446 1.21539 0.96520 1.00309 0.96789 0.94039 0.89144 0.94783 0.86343 0.91916 0.88427 0.93826 0.97105 0.93945 0.92557 0.93860 0.87593 0.89952 0.89636 0.91064 0.90028 0.91191 0.92511 0.91904 0.93768 0.95851 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 8.35 71.98 0.60 -4.35 16 2 C 0.12 3.64 2.30 44.99 0.10 3.75 16 3 C -0.16 -3.93 9.17 71.98 0.66 -3.27 16 4 N -0.59 -24.45 2.33 -802.11 -1.87 -26.32 16 5 C 0.23 11.33 3.66 85.63 0.31 11.65 16 6 C -0.51 -30.52 8.38 25.60 0.21 -30.30 16 7 H 0.03 2.12 7.87 -2.91 -0.02 2.10 16 8 C 0.01 0.58 5.47 84.65 0.46 1.04 16 9 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 10 Si 0.94 45.83 27.47 68.60 1.88 47.71 16 11 H -0.25 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 14 C 0.50 20.66 6.53 87.66 0.57 21.23 16 15 O -0.59 -30.25 13.24 -3.06 -0.04 -30.29 16 16 C -0.09 -2.61 1.76 -11.52 -0.02 -2.63 16 17 H 0.12 2.61 7.79 -2.39 -0.02 2.59 16 18 C -0.11 -2.70 3.67 30.60 0.11 -2.59 16 19 C -0.08 -1.87 3.19 -10.79 -0.03 -1.91 16 20 C -0.10 -1.69 5.71 30.59 0.17 -1.52 16 21 C -0.10 -1.90 5.71 30.59 0.17 -1.73 16 22 C -0.06 -1.71 2.36 -10.78 -0.03 -1.74 16 23 C -0.13 -4.18 5.39 30.59 0.16 -4.02 16 24 C -0.11 -3.35 5.71 30.60 0.17 -3.17 16 25 H 0.04 1.67 6.92 -2.39 -0.02 1.65 16 26 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.03 1.25 6.95 -2.39 -0.02 1.24 16 28 H 0.12 2.74 4.17 -2.39 -0.01 2.73 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.26 6.66 -2.39 -0.02 1.24 16 32 H 0.01 0.60 6.48 -2.39 -0.02 0.59 16 33 H 0.04 1.97 5.85 -2.39 -0.01 1.96 16 34 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.04 1.41 5.55 -2.39 -0.01 1.40 16 36 H 0.11 1.83 7.42 -2.39 -0.02 1.82 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.93 5.52 -2.39 -0.01 1.92 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 46 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -77.37 332.27 4.81 -72.55 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.89 Total: 16.49 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 3.65 Total: -19.56 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.57 Total: -86.90 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.29 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.71 kcal Total: -77.37 4.81 -72.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310826921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.054 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds