Wall clock time and date at job start Tue Mar 31 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47170 * 2 1 4 4 C 1.50700 * 109.46809 * 240.00310 * 2 1 3 5 5 H 1.08008 * 119.99545 * 239.99922 * 4 2 1 6 6 C 1.37873 * 120.00607 * 59.99809 * 4 2 1 7 7 N 1.31517 * 119.99391 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00386 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46841 * 59.99926 * 8 6 4 10 10 H 1.48501 * 109.47110 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46784 * 300.00117 * 8 6 4 12 12 C 1.52998 * 109.47298 * 120.00171 * 2 1 3 13 13 N 1.46506 * 109.46851 * 299.99880 * 12 2 1 14 14 C 1.34776 * 119.99492 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00476 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99771 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.46540 * 299.99769 * 16 14 13 18 18 C 1.52996 * 109.47166 * 59.99491 * 16 14 13 19 19 C 1.53002 * 109.46972 * 120.00546 * 18 16 14 20 20 C 1.53000 * 109.47233 * 59.99538 * 19 18 16 21 21 C 1.52996 * 109.47328 * 300.00469 * 20 19 18 22 22 C 1.52992 * 109.47055 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47451 * 300.00008 * 22 21 20 24 24 C 1.52997 * 109.46817 * 299.99733 * 19 18 16 25 25 H 1.09006 * 109.46802 * 299.99703 * 1 2 3 26 26 H 1.08995 * 109.47366 * 60.00133 * 1 2 3 27 27 H 1.09001 * 109.46675 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47138 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46947 * 300.00015 * 3 2 1 30 30 H 1.08997 * 109.46800 * 59.99654 * 3 2 1 31 31 H 0.97002 * 119.99778 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47205 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46986 * 59.99805 * 12 2 1 34 34 H 0.96996 * 120.00212 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.47452 * 0.02562 * 18 16 14 36 36 H 1.09000 * 109.47054 * 240.00247 * 18 16 14 37 37 H 1.09002 * 109.47070 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46724 * 60.00652 * 20 19 18 39 39 H 1.09001 * 109.47194 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.46828 * 239.99687 * 21 20 19 41 41 H 1.09000 * 109.47441 * 120.00086 * 21 20 19 42 42 H 1.09002 * 109.46985 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47539 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47495 * 299.99957 * 23 22 21 45 45 H 1.08998 * 109.47533 * 179.97438 * 24 19 18 46 46 H 1.08996 * 109.47853 * 300.00202 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8268 -0.4199 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8779 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3751 0.2192 4.9000 17 1 1.7377 1.2472 4.8998 18 6 -0.1549 0.2182 4.9001 19 6 -0.6643 -0.5034 6.1494 20 6 -0.1546 0.2183 7.3986 21 6 1.3754 0.2194 7.3984 22 6 1.8857 -0.5020 6.1495 23 6 1.3768 -1.9449 6.1501 24 6 -0.1533 -1.9455 6.1494 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7080 1.1608 -3.4843 32 1 3.1301 -0.7217 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 0.9944 0.7582 2.3564 35 1 -0.5180 -0.2963 4.0104 36 1 -0.5189 1.2456 4.9001 37 1 -1.7543 -0.5037 6.1497 38 1 -0.5187 1.2457 7.3986 39 1 -0.5179 -0.2955 8.2886 40 1 1.7391 -0.2942 8.2884 41 1 1.7380 1.2473 7.3984 42 1 2.9757 -0.5016 6.1496 43 1 1.7407 -2.4590 5.2606 44 1 1.7406 -2.4581 7.0402 45 1 -0.5157 -2.4595 7.0396 46 1 -0.5163 -2.4597 5.2595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316326912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:59 Heat of formation + Delta-G solvation = -71.420718 kcal Electronic energy + Delta-G solvation = -23237.910922 eV Core-core repulsion = 20125.717161 eV Total energy + Delta-G solvation = -3112.193760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.94630 -38.40639 -36.26719 -33.36127 -31.58523 -31.34715 -30.77684 -30.33150 -25.72380 -25.69235 -25.02093 -23.18577 -22.51889 -21.92714 -19.95014 -18.77534 -17.25983 -16.51448 -16.50999 -15.83208 -15.73508 -15.06637 -14.77074 -14.37536 -14.12235 -13.01924 -12.94027 -12.81969 -12.63803 -12.20489 -12.16504 -12.07447 -11.99269 -11.95580 -11.93232 -11.65426 -11.28897 -11.18228 -10.83290 -10.73596 -10.70344 -10.37963 -10.21616 -10.12031 -9.86522 -9.83373 -9.62292 -9.38082 -8.97782 -8.76987 -8.41761 -8.24779 -6.01526 -4.11619 3.12817 3.30299 3.34547 3.38051 3.79296 4.40428 4.46233 4.61199 4.67039 5.12126 5.22801 5.25098 5.25272 5.27833 5.30051 5.34772 5.40445 5.47272 5.56811 5.65442 5.77073 5.93430 6.03197 6.05121 6.19234 6.24379 6.27561 6.33679 6.34871 6.37355 6.48647 6.52367 6.64555 6.81750 6.83156 6.95224 7.02595 7.10415 7.36825 7.56187 7.69736 8.01470 8.09896 8.19159 8.39542 8.78611 8.89362 9.54121 10.99786 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.003893 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.202088 B = 7190.773834 C = 7354.520622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.509 3.491 15 O -0.549 6.549 16 C -0.103 4.103 17 H 0.091 0.909 18 C -0.108 4.108 19 C -0.085 4.085 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.062 4.062 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 1.390 17.351 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.367 5.367 14 C 0.295 3.705 15 O -0.428 6.428 16 C -0.125 4.125 17 H 0.109 0.891 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.163 4.163 24 C -0.152 4.152 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.061 0.799 17.244 17.532 hybrid contribution 0.060 -0.009 -0.960 0.962 sum -3.002 0.789 16.284 16.577 Atomic orbital electron populations 1.21820 0.97779 0.99102 1.00035 1.18348 0.92776 0.92734 0.90623 1.21822 0.98542 0.98385 1.00037 1.20953 1.31499 1.12086 0.89943 0.92553 1.24874 0.94860 0.94920 0.98816 1.69797 1.36626 1.22757 1.23296 0.86638 0.79243 0.79799 0.82211 1.20296 1.21328 1.20289 1.21681 0.98029 0.95725 0.83600 1.46335 1.52632 1.31717 1.06057 1.20547 0.80399 0.84774 0.84772 1.90578 1.38752 1.26717 1.86751 1.21336 0.96989 1.00400 0.93731 0.89085 1.21584 0.93255 1.01085 0.98640 1.21017 0.99350 0.95362 0.94605 1.21542 0.95822 1.00136 0.97491 1.21566 0.95661 1.00232 0.97682 1.20749 0.99960 0.95125 0.92281 1.21777 0.94785 0.96283 1.03465 1.21555 0.96540 0.95720 1.01342 0.97519 0.89641 0.95516 0.95498 0.89640 0.97518 0.92976 0.92888 0.92892 0.76805 0.91094 0.91235 0.91200 0.92132 0.92217 0.91962 0.92146 0.90799 0.88815 0.92801 0.92491 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.72 -12.68 4.70 -60.29 -0.28 -12.97 16 14 C 0.51 8.66 6.61 -10.98 -0.07 8.58 16 15 O -0.55 -11.08 13.66 5.55 0.08 -11.01 16 16 C -0.10 -1.33 2.57 -91.75 -0.24 -1.56 16 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.11 -1.23 5.21 -26.73 -0.14 -1.37 16 19 C -0.08 -0.88 3.19 -90.62 -0.29 -1.17 16 20 C -0.11 -1.02 5.71 -26.73 -0.15 -1.17 16 21 C -0.11 -1.10 5.71 -26.74 -0.15 -1.26 16 22 C -0.06 -0.77 2.36 -90.60 -0.21 -0.98 16 23 C -0.13 -1.63 5.39 -26.73 -0.14 -1.78 16 24 C -0.11 -1.31 5.71 -26.73 -0.15 -1.47 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 26 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 6.41 6.06 -40.82 -0.25 6.17 16 35 H 0.07 0.91 7.44 -51.93 -0.39 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.09 1.52 5.51 -51.93 -0.29 1.23 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -27.47 338.37 -9.17 -36.64 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.14 Total: 4.88 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -1.42 Total: -15.31 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.24 Total: -36.04 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.47 -9.17 -36.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316326912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.780 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds