Wall clock time and date at job start Tue Mar 31 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47170 * 2 1 4 4 C 1.50700 * 109.46809 * 240.00310 * 2 1 3 5 5 H 1.08008 * 119.99545 * 239.99922 * 4 2 1 6 6 C 1.37873 * 120.00607 * 59.99809 * 4 2 1 7 7 N 1.31517 * 119.99391 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00386 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46841 * 59.99926 * 8 6 4 10 10 H 1.48501 * 109.47110 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46784 * 300.00117 * 8 6 4 12 12 C 1.52998 * 109.47298 * 120.00171 * 2 1 3 13 13 N 1.46506 * 109.46851 * 299.99880 * 12 2 1 14 14 C 1.34776 * 119.99492 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00476 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99771 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.46540 * 299.99769 * 16 14 13 18 18 C 1.52996 * 109.47166 * 59.99491 * 16 14 13 19 19 C 1.53002 * 109.46972 * 120.00546 * 18 16 14 20 20 C 1.53000 * 109.47233 * 59.99538 * 19 18 16 21 21 C 1.52996 * 109.47328 * 300.00469 * 20 19 18 22 22 C 1.52992 * 109.47055 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47451 * 300.00008 * 22 21 20 24 24 C 1.52997 * 109.46817 * 299.99733 * 19 18 16 25 25 H 1.09006 * 109.46802 * 299.99703 * 1 2 3 26 26 H 1.08995 * 109.47366 * 60.00133 * 1 2 3 27 27 H 1.09001 * 109.46675 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47138 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46947 * 300.00015 * 3 2 1 30 30 H 1.08997 * 109.46800 * 59.99654 * 3 2 1 31 31 H 0.97002 * 119.99778 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47205 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46986 * 59.99805 * 12 2 1 34 34 H 0.96996 * 120.00212 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.47452 * 0.02562 * 18 16 14 36 36 H 1.09000 * 109.47054 * 240.00247 * 18 16 14 37 37 H 1.09002 * 109.47070 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46724 * 60.00652 * 20 19 18 39 39 H 1.09001 * 109.47194 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.46828 * 239.99687 * 21 20 19 41 41 H 1.09000 * 109.47441 * 120.00086 * 21 20 19 42 42 H 1.09002 * 109.46985 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47539 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47495 * 299.99957 * 23 22 21 45 45 H 1.08998 * 109.47533 * 179.97438 * 24 19 18 46 46 H 1.08996 * 109.47853 * 300.00202 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8268 -0.4199 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8779 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3751 0.2192 4.9000 17 1 1.7377 1.2472 4.8998 18 6 -0.1549 0.2182 4.9001 19 6 -0.6643 -0.5034 6.1494 20 6 -0.1546 0.2183 7.3986 21 6 1.3754 0.2194 7.3984 22 6 1.8857 -0.5020 6.1495 23 6 1.3768 -1.9449 6.1501 24 6 -0.1533 -1.9455 6.1494 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7080 1.1608 -3.4843 32 1 3.1301 -0.7217 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 0.9944 0.7582 2.3564 35 1 -0.5180 -0.2963 4.0104 36 1 -0.5189 1.2456 4.9001 37 1 -1.7543 -0.5037 6.1497 38 1 -0.5187 1.2457 7.3986 39 1 -0.5179 -0.2955 8.2886 40 1 1.7391 -0.2942 8.2884 41 1 1.7380 1.2473 7.3984 42 1 2.9757 -0.5016 6.1496 43 1 1.7407 -2.4590 5.2606 44 1 1.7406 -2.4581 7.0402 45 1 -0.5157 -2.4595 7.0396 46 1 -0.5163 -2.4597 5.2595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316326912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:59 Heat of formation + Delta-G solvation = -85.231771 kcal Electronic energy + Delta-G solvation = -23238.509814 eV Core-core repulsion = 20125.717161 eV Total energy + Delta-G solvation = -3112.792653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01342 -39.75127 -37.99555 -35.04546 -33.08936 -32.29221 -31.72289 -31.60165 -27.57095 -27.49278 -26.81826 -24.32380 -23.37021 -22.85149 -21.31896 -20.58795 -18.58315 -17.76840 -17.49380 -17.37658 -16.80709 -16.62465 -16.33251 -15.83693 -15.47186 -14.79556 -14.49606 -14.20777 -13.90191 -13.61811 -13.24929 -13.09616 -13.01087 -12.92222 -12.88925 -12.87562 -12.82498 -12.74008 -12.61371 -12.50872 -12.23375 -12.13917 -11.59157 -11.48990 -11.27513 -11.11325 -10.74382 -10.72993 -10.66494 -10.40306 -10.27793 -9.83171 -8.02740 -6.18609 1.43192 1.44298 1.50993 1.76703 2.35527 2.51675 3.20606 3.54590 3.70953 3.75563 4.09950 4.27943 4.37732 4.39179 4.43535 4.46451 4.47060 4.52335 4.55104 4.60663 4.66697 4.71607 4.77243 4.93393 4.99117 5.05233 5.10731 5.16661 5.18493 5.19276 5.23054 5.35358 5.36867 5.41976 5.49027 5.53771 5.56873 5.60424 5.66165 5.66589 5.70836 6.14548 6.21216 6.43108 6.74110 6.85133 7.40746 7.48993 8.95887 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.003893 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.202088 B = 7190.773834 C = 7354.520622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.712 5.712 14 C 0.505 3.495 15 O -0.585 6.585 16 C -0.095 4.095 17 H 0.114 0.886 18 C -0.107 4.107 19 C -0.084 4.084 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.064 4.064 23 C -0.127 4.127 24 C -0.114 4.114 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.407 0.593 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 2.874 19.264 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.363 5.363 14 C 0.293 3.707 15 O -0.466 6.466 16 C -0.117 4.117 17 H 0.132 0.868 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.083 4.083 23 C -0.164 4.164 24 C -0.151 4.151 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.244 0.756 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.199 2.302 19.170 19.759 hybrid contribution 0.444 -0.538 -1.546 1.696 sum -3.755 1.764 17.624 18.106 Atomic orbital electron populations 1.21649 0.97057 0.98505 1.00399 1.18352 0.93282 0.93041 0.90270 1.21656 0.97819 0.97819 1.00416 1.21245 1.31836 1.12181 0.91708 0.93990 1.25434 0.95115 0.95586 1.00885 1.69897 1.36849 1.23225 1.23673 0.85838 0.78620 0.78816 0.79658 1.20345 1.20656 1.20309 1.21202 0.96724 0.94893 0.84626 1.46170 1.52912 1.31876 1.05345 1.21416 0.79399 0.84317 0.85550 1.90580 1.40293 1.28447 1.87268 1.21397 0.98228 1.00782 0.91245 0.86841 1.21630 0.91677 1.02641 0.98541 1.21048 1.00196 0.94117 0.94842 1.21542 0.94943 1.01086 0.96974 1.21542 0.96343 1.00599 0.96080 1.20773 0.99046 0.94909 0.93583 1.21713 0.96069 0.96758 1.01881 1.21554 0.95238 0.97147 1.01186 0.94397 0.91866 0.96550 0.96457 0.91867 0.94378 0.92990 0.94753 0.94879 0.75580 0.92940 0.88563 0.89714 0.90388 0.91062 0.91214 0.90770 0.92524 0.92760 0.92006 0.90877 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.46 8.01 25.60 0.21 -28.26 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 6 C 0.03 1.58 5.15 84.65 0.44 2.01 16 7 N -0.90 -47.95 9.35 21.45 0.20 -47.75 16 8 Si 0.94 42.88 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.15 6.51 4.50 86.38 0.39 6.90 16 13 N -0.71 -24.81 4.70 -463.04 -2.18 -26.99 16 14 C 0.50 17.09 6.61 87.66 0.58 17.67 16 15 O -0.58 -24.43 13.66 -3.04 -0.04 -24.47 16 16 C -0.10 -2.26 2.57 -11.53 -0.03 -2.29 16 17 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 18 C -0.11 -2.13 5.21 30.59 0.16 -1.98 16 19 C -0.08 -1.47 3.19 -10.79 -0.03 -1.50 16 20 C -0.11 -1.49 5.71 30.59 0.17 -1.31 16 21 C -0.11 -1.72 5.71 30.59 0.17 -1.54 16 22 C -0.06 -1.48 2.36 -10.78 -0.03 -1.51 16 23 C -0.13 -3.26 5.39 30.60 0.16 -3.09 16 24 C -0.11 -2.47 5.71 30.60 0.17 -2.29 16 25 H 0.04 1.40 6.86 -2.38 -0.02 1.39 16 26 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 30 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.41 12.37 6.06 -92.71 -0.56 11.80 16 35 H 0.05 1.25 7.44 -2.39 -0.02 1.24 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.05 1.84 5.51 -2.39 -0.01 1.82 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -60.75 338.37 3.89 -56.85 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.38 Total: 21.73 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 3.50 Total: -24.27 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.98 Total: -74.74 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.47 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -60.75 3.89 -56.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316326912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.378 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds