Wall clock time and date at job start Tue Mar 31 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 13 13 N 1.46505 * 109.47266 * 300.00318 * 12 2 1 14 14 C 1.34778 * 119.99943 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99637 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.47374 * 59.99792 * 16 14 13 18 18 C 1.52996 * 109.47240 * 299.99648 * 16 14 13 19 19 C 1.52998 * 109.47303 * 240.00438 * 18 16 14 20 20 C 1.53005 * 109.47179 * 299.99617 * 19 18 16 21 21 C 1.53006 * 109.46691 * 60.00013 * 20 19 18 22 22 C 1.52997 * 109.47164 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46978 * 60.00126 * 22 21 20 24 24 C 1.52998 * 109.47322 * 60.00143 * 19 18 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46716 * 60.00091 * 12 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 34 34 H 0.97000 * 119.99912 * 0.02562 * 13 12 2 35 35 H 1.09006 * 109.46801 * 0.02562 * 18 16 14 36 36 H 1.09004 * 109.47164 * 119.99926 * 18 16 14 37 37 H 1.09002 * 109.47205 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46967 * 300.00315 * 20 19 18 39 39 H 1.08995 * 109.46937 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47050 * 240.00015 * 21 20 19 41 41 H 1.08998 * 109.46505 * 119.99726 * 21 20 19 42 42 H 1.09002 * 109.47045 * 179.97438 * 22 21 20 43 43 H 1.08992 * 109.47513 * 60.00211 * 23 22 21 44 44 H 1.09001 * 109.47248 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47233 * 59.99941 * 24 19 18 46 46 H 1.08995 * 109.47040 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8769 -0.4912 3.6696 15 8 2.5734 -1.4777 3.7809 16 6 1.3740 0.2190 4.9000 17 1 0.2840 0.2189 4.8996 18 6 1.8839 1.6615 4.9005 19 6 2.7335 1.9017 6.1500 20 6 1.8830 1.6610 7.3990 21 6 1.3731 0.2184 7.3985 22 6 1.8841 -0.5027 6.1496 23 6 3.4141 -0.5026 6.1508 24 6 3.9236 0.9402 6.1502 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 0.7089 1.1612 -3.4845 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 0.9936 0.7579 2.3564 35 1 2.4895 1.8330 4.0105 36 1 1.0361 2.3465 4.9002 37 1 3.0971 2.9293 6.1501 38 1 1.0352 2.3461 7.3988 39 1 2.4884 1.8317 8.2891 40 1 0.2831 0.2184 7.3981 41 1 1.7363 -0.2955 8.2885 42 1 1.5212 -1.5305 6.1495 43 1 3.7768 -1.0165 7.0410 44 1 3.7782 -1.0159 5.2609 45 1 4.5294 1.1117 5.2606 46 1 4.5285 1.1110 7.0407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316326913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:03 Heat of formation + Delta-G solvation = -71.429976 kcal Electronic energy + Delta-G solvation = -23237.724087 eV Core-core repulsion = 20125.529926 eV Total energy + Delta-G solvation = -3112.194162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94593 -38.40716 -36.26794 -33.36144 -31.58579 -31.34668 -30.77698 -30.33197 -25.72369 -25.69218 -25.02131 -23.18561 -22.51858 -21.92720 -19.94981 -18.77523 -17.25981 -16.51390 -16.50999 -15.83229 -15.73624 -15.06626 -14.77071 -14.37570 -14.12238 -13.01997 -12.94050 -12.82051 -12.63759 -12.20470 -12.16535 -12.07468 -11.99226 -11.95575 -11.93218 -11.65419 -11.28908 -11.18238 -10.83282 -10.73610 -10.70396 -10.38012 -10.21624 -10.12005 -9.86550 -9.83422 -9.62288 -9.38078 -8.97852 -8.77016 -8.41799 -8.24787 -6.01505 -4.11624 3.12870 3.30297 3.34545 3.38053 3.79306 4.40423 4.46256 4.61193 4.66969 5.12104 5.22833 5.25097 5.25273 5.27849 5.30010 5.34715 5.40482 5.47222 5.56805 5.65411 5.77081 5.93417 6.03190 6.05077 6.19225 6.24365 6.27549 6.33670 6.34906 6.37340 6.48623 6.52335 6.64485 6.81698 6.83140 6.95249 7.02627 7.10413 7.36806 7.56188 7.69721 8.01436 8.09894 8.19154 8.39541 8.78620 8.89387 9.54120 10.99791 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.003893 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.152325 B = 7191.078134 C = 7354.910030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.509 3.491 15 O -0.549 6.549 16 C -0.103 4.103 17 H 0.091 0.909 18 C -0.108 4.108 19 C -0.085 4.085 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.062 4.062 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.026 0.974 26 H 0.085 0.915 27 H 0.006 0.994 28 H 0.006 0.994 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 3.750 17.353 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.368 5.368 14 C 0.295 3.705 15 O -0.428 6.428 16 C -0.125 4.125 17 H 0.109 0.891 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.163 4.163 24 C -0.152 4.152 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.267 3.157 17.247 17.535 hybrid contribution -0.011 -0.059 -0.961 0.963 sum 0.257 3.098 16.286 16.580 Atomic orbital electron populations 1.21824 0.97801 0.99121 1.00037 1.18347 0.92761 0.92747 0.90623 1.21819 0.98516 0.98368 1.00035 1.20952 1.31504 1.12093 0.89941 0.92549 1.24873 0.94852 0.94919 0.98813 1.69790 1.36625 1.22760 1.23299 0.86642 0.79238 0.79811 0.82216 1.20293 1.21328 1.20289 1.21683 0.98012 0.95736 0.83602 1.46339 1.52573 1.31783 1.06059 1.20543 0.80597 0.84576 0.84770 1.90577 1.38607 1.26861 1.86750 1.21337 1.01283 0.96106 0.93733 0.89080 1.21584 0.99936 0.94411 0.98635 1.21016 0.95663 0.99049 0.94605 1.21545 0.99215 0.96739 0.97489 1.21568 1.00147 0.95748 0.97682 1.20753 0.96342 0.98740 0.92281 1.21776 0.94707 0.96366 1.03456 1.21556 0.96872 0.95394 1.01342 0.95503 0.89631 0.97527 0.97516 0.95514 0.89648 0.92970 0.92886 0.92891 0.76808 0.91096 0.91239 0.91201 0.92123 0.92214 0.92146 0.91961 0.90798 0.92791 0.88828 0.92215 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.72 -12.69 4.70 -60.29 -0.28 -12.97 16 14 C 0.51 8.66 6.61 -10.99 -0.07 8.58 16 15 O -0.55 -11.08 13.66 5.56 0.08 -11.01 16 16 C -0.10 -1.33 2.57 -91.75 -0.24 -1.56 16 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.11 -1.23 5.21 -26.73 -0.14 -1.37 16 19 C -0.08 -0.88 3.19 -90.62 -0.29 -1.17 16 20 C -0.11 -1.02 5.71 -26.73 -0.15 -1.17 16 21 C -0.11 -1.10 5.71 -26.73 -0.15 -1.26 16 22 C -0.06 -0.77 2.36 -90.59 -0.21 -0.98 16 23 C -0.13 -1.63 5.39 -26.73 -0.14 -1.78 16 24 C -0.11 -1.31 5.71 -26.73 -0.15 -1.47 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 6.41 6.06 -40.82 -0.25 6.17 16 35 H 0.07 0.91 7.44 -51.93 -0.39 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.51 5.52 -51.93 -0.29 1.23 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -27.47 338.37 -9.17 -36.64 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.14 Total: 4.88 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.42 Total: -15.30 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.24 Total: -36.04 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.47 -9.17 -36.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316326913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.790 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds