Wall clock time and date at job start Tue Mar 31 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 13 13 N 1.46505 * 109.47266 * 300.00318 * 12 2 1 14 14 C 1.34778 * 119.99943 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99637 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.47374 * 59.99792 * 16 14 13 18 18 C 1.52996 * 109.47240 * 299.99648 * 16 14 13 19 19 C 1.52998 * 109.47303 * 240.00438 * 18 16 14 20 20 C 1.53005 * 109.47179 * 299.99617 * 19 18 16 21 21 C 1.53006 * 109.46691 * 60.00013 * 20 19 18 22 22 C 1.52997 * 109.47164 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46978 * 60.00126 * 22 21 20 24 24 C 1.52998 * 109.47322 * 60.00143 * 19 18 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46716 * 60.00091 * 12 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 34 34 H 0.97000 * 119.99912 * 0.02562 * 13 12 2 35 35 H 1.09006 * 109.46801 * 0.02562 * 18 16 14 36 36 H 1.09004 * 109.47164 * 119.99926 * 18 16 14 37 37 H 1.09002 * 109.47205 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46967 * 300.00315 * 20 19 18 39 39 H 1.08995 * 109.46937 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47050 * 240.00015 * 21 20 19 41 41 H 1.08998 * 109.46505 * 119.99726 * 21 20 19 42 42 H 1.09002 * 109.47045 * 179.97438 * 22 21 20 43 43 H 1.08992 * 109.47513 * 60.00211 * 23 22 21 44 44 H 1.09001 * 109.47248 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47233 * 59.99941 * 24 19 18 46 46 H 1.08995 * 109.47040 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8769 -0.4912 3.6696 15 8 2.5734 -1.4777 3.7809 16 6 1.3740 0.2190 4.9000 17 1 0.2840 0.2189 4.8996 18 6 1.8839 1.6615 4.9005 19 6 2.7335 1.9017 6.1500 20 6 1.8830 1.6610 7.3990 21 6 1.3731 0.2184 7.3985 22 6 1.8841 -0.5027 6.1496 23 6 3.4141 -0.5026 6.1508 24 6 3.9236 0.9402 6.1502 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 0.7089 1.1612 -3.4845 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 0.9936 0.7579 2.3564 35 1 2.4895 1.8330 4.0105 36 1 1.0361 2.3465 4.9002 37 1 3.0971 2.9293 6.1501 38 1 1.0352 2.3461 7.3988 39 1 2.4884 1.8317 8.2891 40 1 0.2831 0.2184 7.3981 41 1 1.7363 -0.2955 8.2885 42 1 1.5212 -1.5305 6.1495 43 1 3.7768 -1.0165 7.0410 44 1 3.7782 -1.0159 5.2609 45 1 4.5294 1.1117 5.2606 46 1 4.5285 1.1110 7.0407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316326913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:02 Heat of formation + Delta-G solvation = -85.240262 kcal Electronic energy + Delta-G solvation = -23238.322946 eV Core-core repulsion = 20125.529926 eV Total energy + Delta-G solvation = -3112.793021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01324 -39.75183 -37.99644 -35.04576 -33.09004 -32.29160 -31.72300 -31.60184 -27.57094 -27.49273 -26.81836 -24.32370 -23.36969 -22.85141 -21.31875 -20.58787 -18.58327 -17.76842 -17.49367 -17.37642 -16.80761 -16.62471 -16.33274 -15.83725 -15.47188 -14.79546 -14.49676 -14.20853 -13.90207 -13.61779 -13.24915 -13.09643 -13.01140 -12.92205 -12.88854 -12.87534 -12.82494 -12.74009 -12.61382 -12.50883 -12.23428 -12.13946 -11.59192 -11.48987 -11.27493 -11.11297 -10.74386 -10.73022 -10.66539 -10.40348 -10.27864 -9.83189 -8.02713 -6.18610 1.43181 1.44293 1.50981 1.76741 2.35525 2.51672 3.20608 3.54600 3.70945 3.75541 4.09956 4.27908 4.37723 4.39186 4.43562 4.46453 4.46996 4.52374 4.55174 4.60624 4.66700 4.71577 4.77237 4.93395 4.99074 5.05200 5.10757 5.16665 5.18521 5.19283 5.23021 5.35345 5.36863 5.41962 5.49012 5.53807 5.56869 5.60388 5.66154 5.66589 5.70784 6.14516 6.21213 6.43100 6.74094 6.85157 7.40739 7.48996 8.95899 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.003893 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.152325 B = 7191.078134 C = 7354.910030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.150 3.850 13 N -0.712 5.712 14 C 0.505 3.495 15 O -0.585 6.585 16 C -0.095 4.095 17 H 0.114 0.886 18 C -0.107 4.107 19 C -0.084 4.084 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.064 4.064 23 C -0.127 4.127 24 C -0.114 4.114 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.407 0.593 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 5.306 19.266 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.363 5.363 14 C 0.293 3.707 15 O -0.466 6.466 16 C -0.117 4.117 17 H 0.132 0.868 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.083 4.083 23 C -0.164 4.164 24 C -0.151 4.151 25 H 0.035 0.965 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.244 0.756 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.770 4.732 19.172 19.762 hybrid contribution 0.359 -0.598 -1.547 1.697 sum -0.410 4.134 17.625 18.108 Atomic orbital electron populations 1.21658 0.97061 0.98572 1.00417 1.18350 0.93281 0.93041 0.90269 1.21648 0.97746 0.97819 1.00398 1.21243 1.31838 1.12190 0.91706 0.93986 1.25432 0.95106 0.95587 1.00880 1.69891 1.36849 1.23226 1.23676 0.85841 0.78605 0.78836 0.79666 1.20322 1.20655 1.20332 1.21204 0.96660 0.94953 0.84628 1.46173 1.52831 1.31962 1.05348 1.21412 0.79603 0.84113 0.85548 1.90578 1.40082 1.28659 1.87267 1.21397 1.02410 0.96600 0.91247 0.86839 1.21630 1.00823 0.93501 0.98538 1.21047 0.95028 0.99285 0.94840 1.21544 0.99689 0.96333 0.96972 1.21545 1.00951 0.95992 0.96081 1.20777 0.95632 0.98321 0.93582 1.21713 0.95619 0.97212 1.01872 1.21555 0.97662 0.94728 1.01188 0.96463 0.91855 0.94387 0.94395 0.96547 0.91871 0.92983 0.94754 0.94876 0.75583 0.92940 0.88568 0.89716 0.90379 0.91060 0.90771 0.91214 0.92525 0.91995 0.92771 0.94168 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.46 8.01 25.60 0.21 -28.26 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 6 C 0.03 1.58 5.15 84.66 0.44 2.02 16 7 N -0.90 -47.94 9.35 21.45 0.20 -47.74 16 8 Si 0.94 42.87 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.15 6.51 4.50 86.38 0.39 6.90 16 13 N -0.71 -24.82 4.70 -463.05 -2.18 -27.00 16 14 C 0.50 17.09 6.61 87.66 0.58 17.67 16 15 O -0.58 -24.43 13.66 -3.02 -0.04 -24.48 16 16 C -0.10 -2.27 2.57 -11.52 -0.03 -2.30 16 17 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 19 C -0.08 -1.47 3.19 -10.79 -0.03 -1.50 16 20 C -0.11 -1.49 5.71 30.60 0.17 -1.31 16 21 C -0.11 -1.72 5.71 30.60 0.17 -1.55 16 22 C -0.06 -1.48 2.36 -10.78 -0.03 -1.51 16 23 C -0.13 -3.26 5.39 30.60 0.16 -3.09 16 24 C -0.11 -2.47 5.71 30.60 0.17 -2.30 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 27 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 28 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.41 12.37 6.06 -92.71 -0.56 11.81 16 35 H 0.05 1.25 7.44 -2.38 -0.02 1.24 16 36 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.83 5.52 -2.39 -0.01 1.82 16 45 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -60.75 338.37 3.90 -56.85 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.38 Total: 21.73 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 3.50 Total: -24.26 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.98 Total: -74.74 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.48 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -60.75 3.90 -56.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316326913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.389 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds