Wall clock time and date at job start Tue Mar 31 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52994 * 115.54748 * 34.41638 * 4 2 1 6 6 C 1.53002 * 117.49694 * 248.74685 * 4 2 1 7 7 C 1.52998 * 117.49745 * 180.08853 * 4 2 1 8 8 H 1.08997 * 117.50525 * 359.97438 * 7 4 2 9 9 C 1.50702 * 117.49694 * 214.97369 * 7 4 2 10 10 O 1.21280 * 119.99935 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00119 * 180.02562 * 9 7 4 12 12 C 1.46499 * 119.99998 * 180.02562 * 11 9 7 13 13 H 1.09003 * 110.01620 * 326.39112 * 12 11 9 14 14 C 1.54270 * 110.03542 * 87.83365 * 12 11 9 15 15 C 1.54889 * 104.19605 * 95.67419 * 14 12 11 16 16 C 1.54889 * 102.75109 * 37.94220 * 15 14 12 17 17 H 1.08996 * 110.48374 * 80.73064 * 16 15 14 18 18 C 1.50697 * 110.48787 * 203.38077 * 16 15 14 19 19 H 1.07998 * 120.00204 * 114.77367 * 18 16 15 20 20 C 1.37876 * 119.99878 * 294.77574 * 18 16 15 21 21 N 1.31511 * 119.99918 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99989 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47070 * 90.00098 * 22 20 18 24 24 H 1.48496 * 109.47197 * 209.99638 * 22 20 18 25 25 H 1.48495 * 109.47520 * 330.00125 * 22 20 18 26 26 C 1.53880 * 110.03044 * 205.00125 * 12 11 9 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 30 30 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 33 33 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 34 34 H 1.08996 * 109.47485 * 85.58489 * 5 4 2 35 35 H 1.09003 * 109.47281 * 205.58489 * 5 4 2 36 36 H 1.08998 * 109.47819 * 325.58359 * 5 4 2 37 37 H 1.08998 * 117.50044 * 0.02562 * 6 4 2 38 38 H 1.09000 * 117.49743 * 144.99218 * 6 4 2 39 39 H 0.97005 * 119.99712 * 0.02562 * 11 9 7 40 40 H 1.08995 * 110.48614 * 214.35668 * 14 12 11 41 41 H 1.08998 * 110.48277 * 336.99664 * 14 12 11 42 42 H 1.09007 * 110.75375 * 279.62577 * 15 14 12 43 43 H 1.08995 * 110.75412 * 156.26208 * 15 14 12 44 44 H 0.97006 * 120.00373 * 180.02562 * 21 20 18 45 45 H 1.08994 * 110.03117 * 359.97438 * 26 12 11 46 46 H 1.08996 * 110.03330 * 121.38452 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.1863 -1.8978 1.7266 6 6 2.7393 0.1231 2.3165 7 6 3.5550 -0.8263 1.4353 8 1 4.1884 -0.3820 0.6676 9 6 4.0922 -2.0804 2.0754 10 8 3.3307 -2.9590 2.4207 11 7 5.4187 -2.2258 2.2641 12 6 5.9409 -3.4452 2.8858 13 1 5.2337 -3.8187 3.6264 14 6 6.1966 -4.5197 1.8088 15 6 7.7013 -4.3705 1.4730 16 6 8.3316 -4.0679 2.8552 17 1 8.4707 -4.9891 3.4208 18 6 9.6438 -3.3455 2.6897 19 1 9.7495 -2.3303 3.0425 20 6 10.7093 -3.9808 2.0880 21 7 10.5803 -5.2169 1.6580 22 14 12.3360 -3.0857 1.8836 23 1 13.1867 -3.3262 3.0768 24 1 13.0297 -3.5902 0.6714 25 1 12.0850 -1.6291 1.7402 26 6 7.2983 -3.1579 3.5511 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.4792 -2.8004 1.1904 35 1 1.3368 -2.0456 2.7961 36 1 0.1348 -1.6857 1.5336 37 1 2.8356 1.1925 2.1288 38 1 2.5911 -0.1596 3.3587 39 1 6.0277 -1.5229 1.9882 40 1 5.9910 -5.5139 2.2054 41 1 5.5877 -4.3270 0.9255 42 1 7.8630 -3.5408 0.7847 43 1 8.0992 -5.2981 1.0618 44 1 11.3301 -5.6640 1.2349 45 1 7.5687 -2.1113 3.4110 46 1 7.2499 -3.3920 4.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331424093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:47 Heat of formation + Delta-G solvation = -39.434018 kcal Electronic energy + Delta-G solvation = -22342.755410 eV Core-core repulsion = 19231.948697 eV Total energy + Delta-G solvation = -3110.806713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.35129 -38.41133 -36.76008 -33.51639 -33.20965 -31.89010 -29.35459 -28.17542 -27.38047 -26.34694 -24.31705 -23.40757 -23.05960 -20.25988 -19.42659 -19.05208 -18.29571 -17.03280 -16.52635 -15.79495 -15.42667 -14.72775 -14.67456 -14.41207 -13.95875 -13.93327 -13.28616 -13.13227 -12.80617 -12.73476 -12.53139 -12.31596 -11.80744 -11.77586 -11.68557 -11.54920 -11.20140 -11.01562 -10.97644 -10.84425 -10.80369 -10.56280 -10.37908 -10.10977 -9.93688 -9.78338 -9.57810 -9.24539 -9.13697 -8.82113 -8.52097 -8.35720 -6.01943 -4.05097 2.75609 3.28905 3.36154 3.38055 3.47687 3.79228 4.42383 4.52916 4.57225 4.73195 4.81527 4.94800 5.12093 5.22408 5.30153 5.40273 5.41243 5.51327 5.62261 5.67486 5.67800 5.69074 5.81264 5.83081 5.86044 5.91657 5.99764 6.04633 6.14731 6.21148 6.33924 6.36381 6.56393 6.62676 6.66283 6.76926 6.95054 6.97012 7.27070 7.35373 7.69581 7.85259 7.94168 8.02138 8.42521 8.60678 8.97522 9.58926 11.07501 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028594 B = 0.003436 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.989494 B = 8147.915697 C = 8595.429379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.186 4.186 8 H 0.119 0.881 9 C 0.538 3.462 10 O -0.544 6.544 11 N -0.711 5.711 12 C 0.140 3.860 13 H 0.075 0.925 14 C -0.135 4.135 15 C -0.099 4.099 16 C 0.048 3.952 17 H 0.032 0.968 18 C -0.514 4.514 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.123 4.123 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.022 11.198 -2.382 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.209 4.209 4 C -0.086 4.086 5 C -0.164 4.164 6 C -0.190 4.190 7 C -0.207 4.207 8 H 0.137 0.863 9 C 0.324 3.676 10 O -0.423 6.423 11 N -0.361 5.361 12 C 0.037 3.963 13 H 0.093 0.907 14 C -0.174 4.174 15 C -0.137 4.137 16 C 0.029 3.971 17 H 0.051 0.949 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.233 0.767 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.445 10.403 -2.207 20.431 hybrid contribution 1.528 0.776 -0.367 1.753 sum -15.917 11.179 -2.574 19.620 Atomic orbital electron populations 1.21890 0.94787 1.02101 1.01496 1.20619 0.95898 0.95349 0.96097 1.21992 1.01158 0.95933 1.01790 1.21566 0.91057 0.98992 0.96952 1.21445 0.97107 0.95794 1.02011 1.23296 1.02025 0.97128 0.96538 1.22406 0.95825 0.98217 1.04261 0.86302 1.19627 0.82497 0.87092 0.78410 1.90664 1.56994 1.43103 1.51510 1.46273 1.06735 1.21217 1.61855 1.21756 0.95767 0.84129 0.94692 0.90730 1.22837 0.99574 0.97549 0.97453 1.22451 0.90250 1.01074 0.99941 1.19463 0.91739 0.94298 0.91561 0.94942 1.21164 0.95887 0.99471 1.38709 0.92737 1.24985 0.98591 0.94854 0.95525 1.69960 1.31328 1.11388 1.39977 0.86650 0.84134 0.79958 0.77561 1.20758 1.21314 1.19987 1.22609 0.93319 1.01469 0.98665 0.92866 0.91951 0.92523 0.90765 0.92476 0.92639 0.92179 0.91485 0.91820 0.92848 0.87552 0.88569 0.76657 0.92133 0.93220 0.93538 0.91534 0.93073 0.92056 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.20 37.16 0.30 -0.83 16 2 C -0.06 -0.54 3.15 -90.62 -0.29 -0.83 16 3 C -0.15 -1.14 7.79 37.16 0.29 -0.85 16 4 C -0.09 -0.93 2.46 -154.51 -0.38 -1.31 16 5 C -0.11 -1.30 7.73 37.15 0.29 -1.02 16 6 C -0.15 -1.57 8.92 -26.69 -0.24 -1.81 16 7 C -0.19 -2.23 5.56 -91.73 -0.51 -2.74 16 8 H 0.12 1.26 7.60 -51.93 -0.39 0.86 16 9 C 0.54 8.41 7.59 -10.98 -0.08 8.32 16 10 O -0.54 -10.03 12.76 5.56 0.07 -9.96 16 11 N -0.71 -11.30 5.03 -52.72 -0.27 -11.57 16 12 C 0.14 2.57 3.25 -66.81 -0.22 2.36 16 13 H 0.07 1.41 7.56 -51.93 -0.39 1.02 16 14 C -0.14 -2.67 6.54 -25.07 -0.16 -2.83 16 15 C -0.10 -2.27 5.75 -24.74 -0.14 -2.41 16 16 C 0.05 1.16 2.72 -90.11 -0.25 0.91 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.51 -13.69 8.46 -34.44 -0.29 -13.98 16 19 H 0.05 1.42 7.54 -52.49 -0.40 1.03 16 20 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 21 N -0.89 -25.25 12.29 55.43 0.68 -24.57 16 22 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.12 -2.43 6.13 -25.61 -0.16 -2.59 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 6.45 -51.93 -0.33 0.17 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.43 7.07 -51.93 -0.37 0.07 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.43 6.97 -51.93 -0.36 0.06 16 34 H 0.07 0.95 7.26 -51.93 -0.38 0.57 16 35 H 0.06 0.87 7.01 -51.93 -0.36 0.51 16 36 H 0.05 0.54 5.59 -51.93 -0.29 0.25 16 37 H 0.11 0.89 5.85 -51.93 -0.30 0.58 16 38 H 0.10 1.06 8.05 -51.93 -0.42 0.65 16 39 H 0.40 5.71 8.32 -40.82 -0.34 5.37 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 42 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 43 H 0.07 1.67 7.55 -51.93 -0.39 1.28 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 1.18 7.13 -51.93 -0.37 0.81 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -29.09 351.90 -9.19 -38.28 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.03 Total: 4.58 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.93 Total: -17.99 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.42 Total: -36.14 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.09 -9.19 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.152 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds