Wall clock time and date at job start Tue Mar 31 2020 01:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.52994 * 115.54748 * 34.41638 * 4 2 1 6 6 C 1.53002 * 117.49694 * 248.74685 * 4 2 1 7 7 C 1.52998 * 117.49745 * 180.08853 * 4 2 1 8 8 H 1.08997 * 117.50525 * 359.97438 * 7 4 2 9 9 C 1.50702 * 117.49694 * 214.97369 * 7 4 2 10 10 O 1.21280 * 119.99935 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00119 * 180.02562 * 9 7 4 12 12 C 1.46499 * 119.99998 * 180.02562 * 11 9 7 13 13 H 1.09003 * 110.01620 * 326.39112 * 12 11 9 14 14 C 1.54270 * 110.03542 * 87.83365 * 12 11 9 15 15 C 1.54889 * 104.19605 * 95.67419 * 14 12 11 16 16 C 1.54889 * 102.75109 * 37.94220 * 15 14 12 17 17 H 1.08996 * 110.48374 * 80.73064 * 16 15 14 18 18 C 1.50697 * 110.48787 * 203.38077 * 16 15 14 19 19 H 1.07998 * 120.00204 * 114.77367 * 18 16 15 20 20 C 1.37876 * 119.99878 * 294.77574 * 18 16 15 21 21 N 1.31511 * 119.99918 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99989 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47070 * 90.00098 * 22 20 18 24 24 H 1.48496 * 109.47197 * 209.99638 * 22 20 18 25 25 H 1.48495 * 109.47520 * 330.00125 * 22 20 18 26 26 C 1.53880 * 110.03044 * 205.00125 * 12 11 9 27 27 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 30 30 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 33 33 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 34 34 H 1.08996 * 109.47485 * 85.58489 * 5 4 2 35 35 H 1.09003 * 109.47281 * 205.58489 * 5 4 2 36 36 H 1.08998 * 109.47819 * 325.58359 * 5 4 2 37 37 H 1.08998 * 117.50044 * 0.02562 * 6 4 2 38 38 H 1.09000 * 117.49743 * 144.99218 * 6 4 2 39 39 H 0.97005 * 119.99712 * 0.02562 * 11 9 7 40 40 H 1.08995 * 110.48614 * 214.35668 * 14 12 11 41 41 H 1.08998 * 110.48277 * 336.99664 * 14 12 11 42 42 H 1.09007 * 110.75375 * 279.62577 * 15 14 12 43 43 H 1.08995 * 110.75412 * 156.26208 * 15 14 12 44 44 H 0.97006 * 120.00373 * 180.02562 * 21 20 18 45 45 H 1.08994 * 110.03117 * 359.97438 * 26 12 11 46 46 H 1.08996 * 110.03330 * 121.38452 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.1863 -1.8978 1.7266 6 6 2.7393 0.1231 2.3165 7 6 3.5550 -0.8263 1.4353 8 1 4.1884 -0.3820 0.6676 9 6 4.0922 -2.0804 2.0754 10 8 3.3307 -2.9590 2.4207 11 7 5.4187 -2.2258 2.2641 12 6 5.9409 -3.4452 2.8858 13 1 5.2337 -3.8187 3.6264 14 6 6.1966 -4.5197 1.8088 15 6 7.7013 -4.3705 1.4730 16 6 8.3316 -4.0679 2.8552 17 1 8.4707 -4.9891 3.4208 18 6 9.6438 -3.3455 2.6897 19 1 9.7495 -2.3303 3.0425 20 6 10.7093 -3.9808 2.0880 21 7 10.5803 -5.2169 1.6580 22 14 12.3360 -3.0857 1.8836 23 1 13.1867 -3.3262 3.0768 24 1 13.0297 -3.5902 0.6714 25 1 12.0850 -1.6291 1.7402 26 6 7.2983 -3.1579 3.5511 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.4792 -2.8004 1.1904 35 1 1.3368 -2.0456 2.7961 36 1 0.1348 -1.6857 1.5336 37 1 2.8356 1.1925 2.1288 38 1 2.5911 -0.1596 3.3587 39 1 6.0277 -1.5229 1.9882 40 1 5.9910 -5.5139 2.2054 41 1 5.5877 -4.3270 0.9255 42 1 7.8630 -3.5408 0.7847 43 1 8.0992 -5.2981 1.0618 44 1 11.3301 -5.6640 1.2349 45 1 7.5687 -2.1113 3.4110 46 1 7.2499 -3.3920 4.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331424093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:45 Heat of formation + Delta-G solvation = -54.528646 kcal Electronic energy + Delta-G solvation = -22343.409962 eV Core-core repulsion = 19231.948697 eV Total energy + Delta-G solvation = -3111.461265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45778 -39.66566 -38.20164 -35.20154 -34.04008 -33.61749 -30.24145 -29.97165 -28.95118 -27.14638 -25.99895 -24.71872 -23.83858 -21.65182 -20.96086 -20.69216 -19.16110 -18.52186 -18.09728 -16.91974 -16.75861 -16.54004 -15.90879 -15.46798 -15.39819 -15.12408 -14.56850 -14.20586 -14.11479 -13.85725 -13.58907 -13.55281 -13.31610 -12.94896 -12.80036 -12.61340 -12.49700 -12.46604 -12.36645 -12.23519 -12.13669 -11.91681 -11.67507 -11.51937 -11.46095 -11.08691 -10.96275 -10.82535 -10.71288 -10.46070 -10.32299 -9.91509 -8.09960 -6.19727 1.43001 1.44092 1.53606 1.59122 2.26764 2.45433 2.84668 3.21226 3.65652 3.73113 3.87711 3.93715 4.00901 4.02251 4.21022 4.24109 4.29299 4.45691 4.68377 4.69320 4.74953 4.79440 4.85943 4.92399 4.95114 4.99357 5.01215 5.03167 5.09102 5.10979 5.12358 5.17732 5.22925 5.25972 5.28167 5.42556 5.48313 5.52234 5.61375 5.66170 5.73632 5.90167 5.99171 6.38240 6.69264 6.91504 7.36559 7.47935 8.98999 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028594 B = 0.003436 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.989494 B = 8147.915697 C = 8595.429379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.087 4.087 5 C -0.102 4.102 6 C -0.136 4.136 7 C -0.195 4.195 8 H 0.138 0.862 9 C 0.534 3.466 10 O -0.576 6.576 11 N -0.707 5.707 12 C 0.153 3.847 13 H 0.073 0.927 14 C -0.125 4.125 15 C -0.088 4.088 16 C 0.039 3.961 17 H -0.001 1.001 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.953 3.047 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.263 1.263 26 C -0.110 4.110 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.409 0.591 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.259 0.741 45 H 0.071 0.929 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.736 13.991 -2.722 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.207 4.207 4 C -0.087 4.087 5 C -0.159 4.159 6 C -0.173 4.173 7 C -0.216 4.216 8 H 0.156 0.844 9 C 0.322 3.678 10 O -0.456 6.456 11 N -0.358 5.358 12 C 0.048 3.952 13 H 0.091 0.909 14 C -0.163 4.163 15 C -0.126 4.126 16 C 0.021 3.979 17 H 0.017 0.983 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.189 4.189 21 N -0.561 5.561 22 Si 0.779 3.221 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.188 1.188 26 C -0.148 4.148 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.105 0.895 39 H 0.245 0.755 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.163 13.227 -2.545 22.612 hybrid contribution 1.712 -0.152 -0.242 1.736 sum -16.451 13.075 -2.787 21.198 Atomic orbital electron populations 1.21882 0.93987 1.01966 1.02360 1.20635 0.96567 0.96012 0.94549 1.21983 1.01222 0.94804 1.02685 1.21672 0.89971 0.98806 0.98268 1.21355 0.98722 0.95532 1.00306 1.23382 1.00024 0.98135 0.95729 1.22406 0.96742 0.97129 1.05342 0.84428 1.20268 0.81899 0.87927 0.77698 1.90660 1.57621 1.44550 1.52786 1.46172 1.07286 1.20565 1.61790 1.21418 0.94971 0.84777 0.94056 0.90918 1.22720 0.97162 0.98299 0.98169 1.22212 0.92258 0.99141 0.98975 1.19438 0.92576 0.93673 0.92247 0.98270 1.21550 0.96968 0.99776 1.38175 0.92260 1.25788 1.02113 0.95560 0.95433 1.70101 1.32212 1.12858 1.40909 0.85626 0.79892 0.79257 0.77297 1.20452 1.21387 1.18759 1.22422 0.92668 1.00900 0.98797 0.91609 0.92603 0.92074 0.91378 0.92376 0.91660 0.91426 0.94009 0.93806 0.90871 0.84891 0.89476 0.75509 0.92237 0.92725 0.94132 0.94607 0.93241 0.91050 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.20 71.98 0.59 -1.31 16 2 C -0.06 -0.90 3.15 -10.79 -0.03 -0.94 16 3 C -0.15 -1.74 7.79 71.98 0.56 -1.18 16 4 C -0.09 -1.72 2.46 -52.18 -0.13 -1.85 16 5 C -0.10 -2.45 7.73 71.98 0.56 -1.89 16 6 C -0.14 -2.43 8.92 30.62 0.27 -2.16 16 7 C -0.20 -4.29 5.56 -11.52 -0.06 -4.35 16 8 H 0.14 2.51 7.60 -2.39 -0.02 2.50 16 9 C 0.53 16.15 7.59 87.66 0.67 16.81 16 10 O -0.58 -21.17 12.76 -3.03 -0.04 -21.20 16 11 N -0.71 -21.57 5.03 -439.09 -2.21 -23.78 16 12 C 0.15 5.50 3.25 45.72 0.15 5.65 16 13 H 0.07 2.70 7.56 -2.39 -0.02 2.68 16 14 C -0.12 -4.94 6.54 31.67 0.21 -4.73 16 15 C -0.09 -4.09 5.75 31.88 0.18 -3.91 16 16 C 0.04 1.93 2.72 -10.46 -0.03 1.90 16 17 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 18 C -0.53 -28.07 8.46 25.60 0.22 -27.85 16 19 H 0.06 3.04 7.54 -2.91 -0.02 3.01 16 20 C 0.01 0.53 5.35 84.66 0.45 0.98 16 21 N -0.92 -53.53 12.29 21.45 0.26 -53.27 16 22 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 C -0.11 -4.28 6.13 31.32 0.19 -4.09 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.80 6.45 -2.39 -0.02 0.78 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 0.67 7.07 -2.38 -0.02 0.66 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.69 6.97 -2.39 -0.02 0.68 16 34 H 0.04 1.20 7.26 -2.39 -0.02 1.18 16 35 H 0.04 1.20 7.01 -2.39 -0.02 1.18 16 36 H 0.07 1.41 5.59 -2.39 -0.01 1.39 16 37 H 0.13 1.70 5.85 -2.39 -0.01 1.68 16 38 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 39 H 0.41 10.91 8.32 -92.70 -0.77 10.14 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 42 H 0.04 1.90 8.05 -2.38 -0.02 1.88 16 43 H 0.04 1.86 7.55 -2.39 -0.02 1.84 16 44 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 45 H 0.07 2.64 7.13 -2.39 -0.02 2.62 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.31 351.90 4.02 -59.29 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.18 Total: 23.00 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.79 Total: -28.94 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.94 Total: -77.04 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -63.31 4.02 -59.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.762 kcal (2) G-P(sol) polarization free energy of solvation -63.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds