Wall clock time and date at job start Tue Mar 31 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47372 * 2 1 4 4 C 1.53007 * 109.46689 * 120.00408 * 2 1 3 5 5 C 1.52999 * 115.55011 * 326.01371 * 4 2 1 6 6 C 1.52994 * 117.51998 * 111.71907 * 4 2 1 7 7 C 1.52999 * 117.49558 * 180.35131 * 4 2 1 8 8 H 1.08999 * 117.50099 * 144.99426 * 7 4 2 9 9 C 1.50700 * 117.49951 * 359.96869 * 7 4 2 10 10 O 1.21278 * 120.00025 * 322.81046 * 9 7 4 11 11 N 1.34779 * 120.00006 * 142.81473 * 9 7 4 12 12 C 1.46498 * 120.00361 * 180.02562 * 11 9 7 13 13 H 1.09001 * 110.01298 * 326.39172 * 12 11 9 14 14 C 1.54273 * 110.03399 * 87.82720 * 12 11 9 15 15 C 1.54892 * 104.19297 * 95.67444 * 14 12 11 16 16 C 1.54891 * 102.74466 * 37.94445 * 15 14 12 17 17 H 1.09000 * 110.59880 * 80.79103 * 16 15 14 18 18 C 1.50700 * 110.48500 * 203.37463 * 16 15 14 19 19 H 1.07995 * 120.00416 * 114.77301 * 18 16 15 20 20 C 1.37884 * 120.00065 * 294.77897 * 18 16 15 21 21 N 1.31516 * 119.99928 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00030 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47202 * 89.99922 * 22 20 18 24 24 H 1.48499 * 109.46913 * 210.00139 * 22 20 18 25 25 H 1.48503 * 109.46895 * 329.99525 * 22 20 18 26 26 C 1.53872 * 110.03299 * 204.99754 * 12 11 9 27 27 H 1.08999 * 109.46691 * 60.00125 * 1 2 3 28 28 H 1.08997 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46919 * 300.00013 * 1 2 3 30 30 H 1.09003 * 109.47087 * 239.99539 * 2 1 3 31 31 H 1.09000 * 109.46838 * 185.64876 * 3 2 1 32 32 H 1.08999 * 109.47237 * 305.65447 * 3 2 1 33 33 H 1.09004 * 109.46969 * 65.65171 * 3 2 1 34 34 H 1.08995 * 109.47215 * 274.33504 * 5 4 2 35 35 H 1.09004 * 109.47002 * 34.33480 * 5 4 2 36 36 H 1.08993 * 109.47109 * 154.33549 * 5 4 2 37 37 H 1.09004 * 117.49737 * 359.97438 * 6 4 2 38 38 H 1.08997 * 117.50408 * 214.96334 * 6 4 2 39 39 H 0.97003 * 119.99965 * 359.97438 * 11 9 7 40 40 H 1.08995 * 110.48463 * 214.35489 * 14 12 11 41 41 H 1.09005 * 110.48535 * 336.99872 * 14 12 11 42 42 H 1.08998 * 110.75867 * 279.62905 * 15 14 12 43 43 H 1.08998 * 110.90947 * 156.33219 * 15 14 12 44 44 H 0.96998 * 119.99965 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.03179 * 359.97438 * 26 12 11 46 46 H 1.09001 * 110.02997 * 121.42919 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.1808 -0.5550 2.5042 6 6 2.7490 -2.0626 1.0512 7 6 3.5550 -0.8210 1.4385 8 1 3.9395 -0.7682 2.4570 9 6 4.4307 -0.2018 0.3798 10 8 4.1057 -0.2616 -0.7871 11 7 5.5750 0.4183 0.7298 12 6 6.4261 1.0207 -0.2992 13 1 6.3741 0.4344 -1.2166 14 6 5.9786 2.4717 -0.5722 15 6 6.9109 3.3305 0.3179 16 6 8.2663 2.5889 0.2083 17 1 8.7771 2.8581 -0.7162 18 6 9.1356 2.9002 1.3994 19 1 9.3989 2.1173 2.0951 20 6 9.5946 4.1847 1.6010 21 7 9.2742 5.1381 0.7536 22 14 10.6715 4.5707 3.0777 23 1 12.0985 4.3838 2.7120 24 1 10.4484 5.9771 3.4988 25 1 10.3233 3.6580 4.1962 26 6 7.8807 1.0953 0.1971 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1254 1.4440 -0.1012 32 1 1.5965 1.9847 -0.8350 33 1 1.7618 1.9262 0.9363 34 1 1.4672 0.3603 3.0220 35 1 0.1299 -0.4982 2.2202 36 1 1.3330 -1.4087 3.1645 37 1 2.8519 -2.4316 0.0307 38 1 2.6034 -2.8265 1.8150 39 1 5.8347 0.4663 1.6632 40 1 6.1178 2.7223 -1.6238 41 1 4.9376 2.6112 -0.2804 42 1 6.5585 3.3409 1.3493 43 1 6.9933 4.3455 -0.0708 44 1 9.5968 6.0417 0.8956 45 1 7.9533 0.6837 1.2037 46 1 8.5348 0.5459 -0.4799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331424095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:52 Heat of formation + Delta-G solvation = -39.445467 kcal Electronic energy + Delta-G solvation = -22819.717396 eV Core-core repulsion = 19708.910186 eV Total energy + Delta-G solvation = -3110.807209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45938 -38.20549 -36.59052 -33.61312 -33.35154 -31.87098 -28.91516 -28.18395 -27.23354 -26.87128 -24.34913 -23.33931 -22.54769 -20.33390 -19.45207 -19.16861 -18.36493 -16.94511 -16.51480 -15.68592 -15.03195 -14.95265 -14.65012 -14.45123 -13.95613 -13.87002 -13.30820 -13.14719 -12.73866 -12.59113 -12.49834 -12.31160 -11.96657 -11.69771 -11.62182 -11.23625 -11.21783 -11.01263 -10.91302 -10.80992 -10.62363 -10.55912 -10.36883 -10.03961 -9.94971 -9.76111 -9.57808 -9.32245 -9.19744 -8.81832 -8.52543 -8.35659 -6.02017 -4.05118 2.67224 3.28880 3.36138 3.38025 3.50593 3.87221 4.42409 4.53490 4.66259 4.80017 4.87927 5.14683 5.22120 5.29803 5.33234 5.43204 5.53254 5.62346 5.64823 5.67311 5.70160 5.73095 5.82810 5.84958 5.94951 5.98523 6.01027 6.02760 6.27655 6.32087 6.36106 6.48063 6.54905 6.63547 6.70178 6.78109 6.94830 6.96295 7.26713 7.35182 7.69641 7.85486 7.93029 8.02009 8.42421 8.59329 8.97487 9.58924 11.07432 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.003801 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.758644 B = 7365.002584 C = 7439.567247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.143 4.143 7 C -0.189 4.189 8 H 0.115 0.885 9 C 0.542 3.458 10 O -0.546 6.546 11 N -0.712 5.712 12 C 0.141 3.859 13 H 0.075 0.925 14 C -0.136 4.136 15 C -0.099 4.099 16 C 0.048 3.952 17 H 0.032 0.968 18 C -0.514 4.514 19 H 0.054 0.946 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.123 4.123 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.399 0.601 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 -11.071 2.033 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.207 4.207 4 C -0.085 4.085 5 C -0.180 4.180 6 C -0.180 4.180 7 C -0.210 4.210 8 H 0.133 0.867 9 C 0.329 3.671 10 O -0.425 6.425 11 N -0.361 5.361 12 C 0.037 3.963 13 H 0.093 0.907 14 C -0.175 4.175 15 C -0.137 4.137 16 C 0.029 3.971 17 H 0.051 0.949 18 C -0.553 4.553 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.404 -10.905 1.158 18.909 hybrid contribution 0.922 0.398 1.407 1.728 sum -14.482 -10.507 2.564 18.075 Atomic orbital electron populations 1.21936 0.95604 1.01298 1.01497 1.20675 0.94559 0.96347 0.96107 1.21976 1.02937 0.95171 1.00647 1.21517 0.90192 0.99197 0.97610 1.21520 0.99791 1.01842 0.94848 1.23196 1.01416 0.90173 1.03226 1.22431 0.94072 1.04811 0.99671 0.86652 1.19453 0.81023 0.77762 0.88846 1.90648 1.72166 1.60218 1.19435 1.46257 1.22384 1.56307 1.11191 1.21756 0.90410 0.93849 0.90291 0.90683 1.22854 0.99150 0.95047 1.00402 1.22440 0.95367 0.98975 0.96894 1.19464 0.92828 0.87421 0.97374 0.94935 1.21170 1.30661 0.94269 1.09166 0.92750 1.24982 0.96116 0.96539 0.96267 1.69960 1.45189 1.01420 1.36083 0.86658 0.80949 0.77519 0.83223 1.20753 1.21308 1.19993 1.22608 0.92149 1.01391 0.99935 0.92854 0.92880 0.92501 0.89381 0.91153 0.93132 0.93578 0.92029 0.90978 0.92478 0.87901 0.88306 0.76659 0.92151 0.93081 0.93559 0.91538 0.93075 0.92062 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.18 37.16 0.30 -1.11 16 2 C -0.06 -0.71 2.21 -90.62 -0.20 -0.91 16 3 C -0.15 -2.04 8.63 37.15 0.32 -1.72 16 4 C -0.08 -0.92 1.92 -154.51 -0.30 -1.21 16 5 C -0.12 -1.07 9.48 37.16 0.35 -0.72 16 6 C -0.14 -1.51 9.36 -26.73 -0.25 -1.76 16 7 C -0.19 -2.26 5.81 -91.77 -0.53 -2.79 16 8 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 9 C 0.54 8.28 5.41 -10.98 -0.06 8.22 16 10 O -0.55 -9.76 12.64 5.56 0.07 -9.69 16 11 N -0.71 -11.14 5.03 -52.72 -0.27 -11.41 16 12 C 0.14 2.54 3.25 -66.81 -0.22 2.33 16 13 H 0.08 1.40 7.56 -51.93 -0.39 1.01 16 14 C -0.14 -2.63 6.54 -25.07 -0.16 -2.80 16 15 C -0.10 -2.24 5.75 -24.74 -0.14 -2.38 16 16 C 0.05 1.15 2.72 -90.11 -0.25 0.90 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.51 -13.66 8.46 -34.44 -0.29 -13.95 16 19 H 0.05 1.42 7.54 -52.49 -0.40 1.02 16 20 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 21 N -0.89 -25.19 12.29 55.43 0.68 -24.51 16 22 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.12 -2.42 6.13 -25.62 -0.16 -2.58 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 30 H 0.09 1.25 6.59 -51.93 -0.34 0.91 16 31 H 0.07 1.13 3.81 -51.93 -0.20 0.93 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.57 5.59 -51.93 -0.29 0.28 16 36 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 37 H 0.10 1.21 7.91 -51.93 -0.41 0.79 16 38 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 39 H 0.40 5.65 8.32 -40.82 -0.34 5.31 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.96 7.15 -51.93 -0.37 0.59 16 42 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 43 H 0.07 1.66 7.55 -51.93 -0.39 1.27 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.06 1.18 7.13 -51.93 -0.37 0.81 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -28.80 351.21 -8.94 -37.74 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.02 Total: 5.54 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.67 Total: -18.85 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.42 Total: -35.91 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.80 -8.94 -37.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.708 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds