Wall clock time and date at job start Tue Mar 31 2020 01:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47203 * 2 1 4 4 C 1.53001 * 109.46781 * 119.99213 * 2 1 3 5 5 C 1.52999 * 115.56769 * 325.69529 * 4 2 1 6 6 C 1.53006 * 117.49537 * 111.37921 * 4 2 1 7 7 C 1.52994 * 117.50024 * 179.97438 * 4 2 1 8 8 H 1.09005 * 117.51900 * 359.97438 * 7 4 2 9 9 C 1.50701 * 117.50307 * 145.02121 * 7 4 2 10 10 O 1.21281 * 119.99651 * 0.02562 * 9 7 4 11 11 N 1.34773 * 120.00392 * 180.02562 * 9 7 4 12 12 C 1.46500 * 119.99894 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.01868 * 325.70649 * 12 11 9 14 14 C 1.53873 * 110.03147 * 87.09634 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33268 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31514 * 120.00160 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99758 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46753 * 89.99929 * 22 20 18 24 24 H 1.48501 * 109.46917 * 209.99435 * 22 20 18 25 25 H 1.48489 * 109.47166 * 329.99935 * 22 20 18 26 26 C 1.54273 * 110.07287 * 204.28551 * 12 11 9 27 27 H 1.08995 * 109.47046 * 300.00323 * 1 2 3 28 28 H 1.08996 * 109.46450 * 60.00613 * 1 2 3 29 29 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47549 * 239.99650 * 2 1 3 31 31 H 1.08997 * 109.47719 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46749 * 299.99785 * 3 2 1 33 33 H 1.09001 * 109.47213 * 59.99206 * 3 2 1 34 34 H 1.08998 * 109.47111 * 274.31303 * 5 4 2 35 35 H 1.09006 * 109.47010 * 34.30377 * 5 4 2 36 36 H 1.08998 * 109.47609 * 154.30634 * 5 4 2 37 37 H 1.09004 * 117.49807 * 0.02562 * 6 4 2 38 38 H 1.09001 * 117.50117 * 214.98102 * 6 4 2 39 39 H 0.97002 * 120.00266 * 0.02562 * 11 9 7 40 40 H 1.08996 * 110.03511 * 238.61506 * 14 12 11 41 41 H 1.09002 * 110.03347 * 0.04582 * 14 12 11 42 42 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 43 43 H 1.08998 * 110.48673 * 264.79629 * 15 14 12 44 44 H 0.97004 * 120.00181 * 179.97438 * 21 20 18 45 45 H 1.09001 * 110.48533 * 335.76640 * 26 12 11 46 46 H 1.08999 * 110.48202 * 98.40568 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.1851 -0.5485 2.5065 6 6 2.7419 -2.0662 1.0516 7 6 3.5549 -0.8285 1.4342 8 1 4.1887 -0.3859 0.6657 9 6 4.0913 -0.7555 2.8407 10 8 3.3291 -0.6170 3.7739 11 7 5.4179 -0.8442 3.0615 12 6 5.9391 -0.7738 4.4288 13 1 5.3302 -0.0949 5.0258 14 6 5.9430 -2.1752 5.0642 15 6 7.4111 -2.4973 5.4118 16 6 8.0845 -1.1085 5.5406 17 1 7.8791 -0.6686 6.5165 18 6 9.5695 -1.2110 5.3052 19 1 10.0245 -0.6760 4.4847 20 6 10.3473 -1.9880 6.1373 21 7 9.7935 -2.6391 7.1367 22 14 12.1880 -2.1156 5.8450 23 1 12.8848 -1.0454 6.6029 24 1 12.6712 -3.4425 6.3045 25 1 12.4709 -1.9604 4.3956 26 6 7.4050 -0.2932 4.4125 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 3.1301 1.4426 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.4775 0.3663 3.0219 35 1 0.1338 -0.4870 2.2253 36 1 1.3350 -1.4019 3.1678 37 1 2.8407 -2.4371 0.0314 38 1 2.5946 -2.8281 1.8171 39 1 6.0275 -0.9546 2.3151 40 1 5.3361 -2.1764 5.9695 41 1 5.5578 -2.9078 4.3549 42 1 7.4696 -3.0387 6.3561 43 1 7.8744 -3.0755 4.6124 44 1 10.3407 -3.1860 7.7219 45 1 7.8680 -0.5134 3.4506 46 1 7.4589 0.7740 4.6275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331424096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:57 Heat of formation + Delta-G solvation = -42.325370 kcal Electronic energy + Delta-G solvation = -22256.560262 eV Core-core repulsion = 19145.628170 eV Total energy + Delta-G solvation = -3110.932091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.31322 -38.30851 -36.72866 -33.61393 -33.50666 -31.92306 -28.77608 -28.16240 -27.24692 -26.95174 -24.49294 -23.38143 -22.65734 -20.31984 -19.63059 -19.01229 -18.41236 -17.00927 -16.51621 -15.66063 -15.26496 -14.86661 -14.71158 -14.42838 -13.96795 -13.80687 -13.46439 -13.01684 -12.75605 -12.69654 -12.49857 -12.36545 -12.27123 -11.79207 -11.62495 -11.36254 -11.31066 -11.09814 -10.98578 -10.90317 -10.73991 -10.58663 -10.26701 -10.14124 -9.95538 -9.84020 -9.51495 -9.30123 -9.13006 -8.80707 -8.53871 -8.36763 -6.00969 -4.04619 2.72726 3.29752 3.36793 3.38726 3.42704 3.76319 4.42958 4.47547 4.53658 4.71955 4.79046 5.04915 5.12286 5.18198 5.30659 5.31156 5.45274 5.53154 5.62743 5.63657 5.67661 5.68561 5.80936 5.81164 5.85158 5.89353 5.98554 6.09148 6.14847 6.16194 6.33838 6.37906 6.56905 6.61252 6.68600 6.76165 6.91935 6.97168 7.27753 7.34766 7.72146 7.87298 7.90599 8.02809 8.42469 8.57243 8.97465 9.59563 11.08103 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.040846 B = 0.003135 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.338342 B = 8929.346094 C = 9161.829251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.106 4.106 6 C -0.148 4.148 7 C -0.185 4.185 8 H 0.118 0.882 9 C 0.537 3.463 10 O -0.541 6.541 11 N -0.715 5.715 12 C 0.139 3.861 13 H 0.079 0.921 14 C -0.134 4.134 15 C -0.100 4.100 16 C 0.052 3.948 17 H 0.032 0.968 18 C -0.515 4.515 19 H 0.055 0.945 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.121 4.121 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.397 0.603 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.582 3.517 -14.517 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.085 4.085 5 C -0.163 4.163 6 C -0.186 4.186 7 C -0.207 4.207 8 H 0.136 0.864 9 C 0.323 3.677 10 O -0.419 6.419 11 N -0.365 5.365 12 C 0.035 3.965 13 H 0.097 0.903 14 C -0.172 4.172 15 C -0.138 4.138 16 C 0.033 3.967 17 H 0.050 0.950 18 C -0.553 4.553 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.159 4.159 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.074 3.501 -13.670 21.389 hybrid contribution 1.580 -0.267 -0.516 1.683 sum -14.494 3.233 -14.186 20.537 Atomic orbital electron populations 1.21897 0.94785 1.01872 1.01787 1.20684 0.95935 0.95908 0.95242 1.21821 1.01155 0.95632 1.01699 1.21555 0.91040 0.98386 0.97542 1.21440 0.97096 1.03640 0.94134 1.23175 1.01985 0.90809 1.02620 1.22357 0.95870 1.05971 0.96460 0.86382 1.19621 0.82529 0.76144 0.89361 1.90675 1.56778 1.49637 1.44806 1.46319 1.06795 1.73312 1.10070 1.21849 0.95769 0.97752 0.81126 0.90334 1.22643 1.00069 0.95282 0.99253 1.22300 0.90272 1.00348 1.00892 1.19543 0.93976 0.90611 0.92589 0.95010 1.21097 0.92090 1.28673 1.13428 0.92676 1.24980 0.98308 0.95551 0.95079 1.69962 1.35353 1.30539 1.16808 0.86639 0.85869 0.77321 0.78414 1.20734 1.21297 1.19981 1.22753 0.91952 0.99484 1.01699 0.91888 0.92856 0.92531 0.91183 0.92642 0.92798 0.92398 0.91507 0.92836 0.91777 0.88154 0.88320 0.76935 0.92699 0.93302 0.91283 0.93548 0.93061 0.92113 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.20 37.16 0.30 -0.79 16 2 C -0.06 -0.50 2.99 -90.62 -0.27 -0.77 16 3 C -0.15 -1.23 9.03 37.16 0.34 -0.89 16 4 C -0.08 -0.89 1.91 -154.51 -0.29 -1.19 16 5 C -0.11 -1.28 7.73 37.16 0.29 -0.99 16 6 C -0.15 -1.52 9.52 -26.75 -0.25 -1.77 16 7 C -0.19 -2.13 5.39 -91.80 -0.49 -2.62 16 8 H 0.12 1.14 7.61 -51.93 -0.40 0.75 16 9 C 0.54 8.20 7.59 -10.99 -0.08 8.12 16 10 O -0.54 -9.91 12.77 5.56 0.07 -9.84 16 11 N -0.72 -10.97 4.99 -52.72 -0.26 -11.23 16 12 C 0.14 2.55 3.23 -66.81 -0.22 2.33 16 13 H 0.08 1.53 7.59 -51.93 -0.39 1.14 16 14 C -0.13 -2.65 6.59 -25.61 -0.17 -2.82 16 15 C -0.10 -2.32 5.56 -25.07 -0.14 -2.45 16 16 C 0.05 1.26 2.82 -89.78 -0.25 1.00 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.51 -13.84 8.54 -34.44 -0.29 -14.13 16 19 H 0.05 1.45 7.78 -52.48 -0.41 1.05 16 20 C 0.06 1.72 5.33 -17.82 -0.10 1.62 16 21 N -0.89 -25.34 12.02 55.43 0.67 -24.67 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.12 -2.40 5.94 -25.07 -0.15 -2.55 16 27 H 0.06 0.49 6.45 -51.93 -0.33 0.16 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 31 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.92 7.26 -51.93 -0.38 0.55 16 35 H 0.05 0.54 5.59 -51.93 -0.29 0.25 16 36 H 0.06 0.89 7.02 -51.93 -0.36 0.52 16 37 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 39 H 0.40 5.21 8.35 -40.82 -0.34 4.87 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.07 1.76 7.37 -51.93 -0.38 1.37 16 43 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.06 1.16 7.63 -51.93 -0.40 0.76 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -29.30 356.23 -9.20 -38.50 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.23 Total: 3.77 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.79 Total: -17.91 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.40 Total: -35.91 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.30 -9.20 -38.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.829 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds