Wall clock time and date at job start Tue Mar 31 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47203 * 2 1 4 4 C 1.53001 * 109.46781 * 119.99213 * 2 1 3 5 5 C 1.52999 * 115.56769 * 325.69529 * 4 2 1 6 6 C 1.53006 * 117.49537 * 111.37921 * 4 2 1 7 7 C 1.52994 * 117.50024 * 179.97438 * 4 2 1 8 8 H 1.09005 * 117.51900 * 359.97438 * 7 4 2 9 9 C 1.50701 * 117.50307 * 145.02121 * 7 4 2 10 10 O 1.21281 * 119.99651 * 0.02562 * 9 7 4 11 11 N 1.34773 * 120.00392 * 180.02562 * 9 7 4 12 12 C 1.46500 * 119.99894 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.01868 * 325.70649 * 12 11 9 14 14 C 1.53873 * 110.03147 * 87.09634 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33268 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31514 * 120.00160 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99758 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46753 * 89.99929 * 22 20 18 24 24 H 1.48501 * 109.46917 * 209.99435 * 22 20 18 25 25 H 1.48489 * 109.47166 * 329.99935 * 22 20 18 26 26 C 1.54273 * 110.07287 * 204.28551 * 12 11 9 27 27 H 1.08995 * 109.47046 * 300.00323 * 1 2 3 28 28 H 1.08996 * 109.46450 * 60.00613 * 1 2 3 29 29 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47549 * 239.99650 * 2 1 3 31 31 H 1.08997 * 109.47719 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46749 * 299.99785 * 3 2 1 33 33 H 1.09001 * 109.47213 * 59.99206 * 3 2 1 34 34 H 1.08998 * 109.47111 * 274.31303 * 5 4 2 35 35 H 1.09006 * 109.47010 * 34.30377 * 5 4 2 36 36 H 1.08998 * 109.47609 * 154.30634 * 5 4 2 37 37 H 1.09004 * 117.49807 * 0.02562 * 6 4 2 38 38 H 1.09001 * 117.50117 * 214.98102 * 6 4 2 39 39 H 0.97002 * 120.00266 * 0.02562 * 11 9 7 40 40 H 1.08996 * 110.03511 * 238.61506 * 14 12 11 41 41 H 1.09002 * 110.03347 * 0.04582 * 14 12 11 42 42 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 43 43 H 1.08998 * 110.48673 * 264.79629 * 15 14 12 44 44 H 0.97004 * 120.00181 * 179.97438 * 21 20 18 45 45 H 1.09001 * 110.48533 * 335.76640 * 26 12 11 46 46 H 1.08999 * 110.48202 * 98.40568 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.1851 -0.5485 2.5065 6 6 2.7419 -2.0662 1.0516 7 6 3.5549 -0.8285 1.4342 8 1 4.1887 -0.3859 0.6657 9 6 4.0913 -0.7555 2.8407 10 8 3.3291 -0.6170 3.7739 11 7 5.4179 -0.8442 3.0615 12 6 5.9391 -0.7738 4.4288 13 1 5.3302 -0.0949 5.0258 14 6 5.9430 -2.1752 5.0642 15 6 7.4111 -2.4973 5.4118 16 6 8.0845 -1.1085 5.5406 17 1 7.8791 -0.6686 6.5165 18 6 9.5695 -1.2110 5.3052 19 1 10.0245 -0.6760 4.4847 20 6 10.3473 -1.9880 6.1373 21 7 9.7935 -2.6391 7.1367 22 14 12.1880 -2.1156 5.8450 23 1 12.8848 -1.0454 6.6029 24 1 12.6712 -3.4425 6.3045 25 1 12.4709 -1.9604 4.3956 26 6 7.4050 -0.2932 4.4125 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 3.1301 1.4426 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.4775 0.3663 3.0219 35 1 0.1338 -0.4870 2.2253 36 1 1.3350 -1.4019 3.1678 37 1 2.8407 -2.4371 0.0314 38 1 2.5946 -2.8281 1.8171 39 1 6.0275 -0.9546 2.3151 40 1 5.3361 -2.1764 5.9695 41 1 5.5578 -2.9078 4.3549 42 1 7.4696 -3.0387 6.3561 43 1 7.8744 -3.0755 4.6124 44 1 10.3407 -3.1860 7.7219 45 1 7.8680 -0.5134 3.4506 46 1 7.4589 0.7740 4.6275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331424096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:55 Heat of formation + Delta-G solvation = -57.651045 kcal Electronic energy + Delta-G solvation = -22257.224833 eV Core-core repulsion = 19145.628170 eV Total energy + Delta-G solvation = -3111.596663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41575 -39.56070 -38.15331 -35.27280 -34.28322 -33.71547 -30.04272 -29.69238 -28.76800 -27.67146 -26.14079 -24.77862 -23.38639 -21.69861 -21.14489 -20.69651 -19.29580 -18.46188 -18.10868 -16.85475 -16.62287 -16.43269 -16.11769 -15.64244 -15.28996 -14.94039 -14.44655 -14.24691 -14.04849 -13.80598 -13.66730 -13.58355 -13.28848 -13.25562 -13.02323 -12.80096 -12.57548 -12.46316 -12.34251 -12.07745 -12.05163 -11.97757 -11.67548 -11.42290 -11.39640 -11.09805 -10.98429 -10.82674 -10.76571 -10.46920 -10.35995 -9.93425 -8.10213 -6.20962 1.42930 1.43699 1.53609 1.58769 2.23665 2.45101 2.84661 3.20539 3.63151 3.71954 3.83880 3.92790 4.02239 4.04181 4.18904 4.22372 4.37780 4.46398 4.61136 4.67568 4.76749 4.84272 4.88035 4.88703 4.91323 5.00338 5.01847 5.04982 5.07484 5.07694 5.10926 5.14390 5.20621 5.26343 5.30903 5.40160 5.46823 5.49369 5.64658 5.65673 5.71618 5.92614 5.98813 6.36561 6.68536 6.89698 7.36840 7.47008 8.98263 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.040846 B = 0.003135 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.338342 B = 8929.346094 C = 9161.829251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.102 4.102 6 C -0.137 4.137 7 C -0.190 4.190 8 H 0.144 0.856 9 C 0.533 3.467 10 O -0.576 6.576 11 N -0.708 5.708 12 C 0.152 3.848 13 H 0.067 0.933 14 C -0.123 4.123 15 C -0.089 4.089 16 C 0.040 3.960 17 H -0.001 1.001 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.955 3.045 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.106 4.106 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.411 0.589 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.734 3.784 -17.656 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.086 4.086 5 C -0.159 4.159 6 C -0.174 4.174 7 C -0.211 4.211 8 H 0.162 0.838 9 C 0.321 3.679 10 O -0.456 6.456 11 N -0.359 5.359 12 C 0.047 3.953 13 H 0.085 0.915 14 C -0.161 4.161 15 C -0.127 4.127 16 C 0.021 3.979 17 H 0.017 0.983 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.149 0.851 38 H 0.102 0.898 39 H 0.247 0.753 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.222 3.775 -16.844 23.688 hybrid contribution 1.579 -0.339 0.521 1.697 sum -14.644 3.436 -16.323 22.196 Atomic orbital electron populations 1.21895 0.94160 1.02189 1.02102 1.20710 0.96433 0.95643 0.94494 1.21829 1.01051 0.95725 1.01739 1.21648 0.90068 0.99147 0.97709 1.21341 0.98720 1.01293 0.94506 1.23270 1.00431 0.89989 1.03733 1.22362 0.96742 1.07675 0.94326 0.83819 1.20318 0.81943 0.74886 0.90760 1.90674 1.57531 1.51002 1.46436 1.46148 1.07376 1.73358 1.09051 1.21429 0.94834 0.96202 0.82814 0.91471 1.22509 0.97481 0.96656 0.99485 1.22068 0.92436 0.99257 0.98954 1.19528 0.93752 0.91917 0.92682 0.98327 1.21483 0.93452 1.28378 1.13398 0.92253 1.25796 1.02806 0.95358 0.94900 1.70106 1.36890 1.31297 1.17724 0.85608 0.80456 0.77134 0.78769 1.20370 1.21275 1.18797 1.22552 0.92262 0.99163 1.00437 0.92712 0.91454 0.92216 0.89398 0.92805 0.91283 0.93868 0.93869 0.90989 0.94195 0.85145 0.89793 0.75278 0.93357 0.92098 0.94408 0.94306 0.93194 0.90742 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.20 71.98 0.59 -1.22 16 2 C -0.05 -0.75 2.99 -10.79 -0.03 -0.79 16 3 C -0.15 -2.10 9.03 71.98 0.65 -1.45 16 4 C -0.09 -1.62 1.91 -52.18 -0.10 -1.72 16 5 C -0.10 -2.42 7.73 71.98 0.56 -1.87 16 6 C -0.14 -2.43 9.52 30.58 0.29 -2.14 16 7 C -0.19 -3.91 5.39 -11.56 -0.06 -3.97 16 8 H 0.14 2.24 7.61 -2.38 -0.02 2.22 16 9 C 0.53 15.69 7.59 87.66 0.67 16.35 16 10 O -0.58 -21.27 12.77 -3.03 -0.04 -21.31 16 11 N -0.71 -20.64 4.99 -439.09 -2.19 -22.83 16 12 C 0.15 5.53 3.23 45.72 0.15 5.68 16 13 H 0.07 2.63 7.59 -2.39 -0.02 2.62 16 14 C -0.12 -4.89 6.59 31.32 0.21 -4.68 16 15 C -0.09 -4.22 5.56 31.67 0.18 -4.04 16 16 C 0.04 1.99 2.82 -10.25 -0.03 1.96 16 17 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 18 C -0.53 -28.57 8.54 25.60 0.22 -28.35 16 19 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 20 C 0.01 0.55 5.33 84.65 0.45 1.01 16 21 N -0.92 -53.82 12.02 21.45 0.26 -53.56 16 22 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 C -0.11 -4.14 5.94 31.67 0.19 -3.96 16 27 H 0.05 0.76 6.45 -2.39 -0.02 0.75 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.96 7.90 -2.39 -0.02 0.94 16 31 H 0.05 0.78 7.29 -2.39 -0.02 0.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.04 1.22 7.26 -2.39 -0.02 1.20 16 35 H 0.07 1.39 5.59 -2.38 -0.01 1.38 16 36 H 0.04 1.12 7.02 -2.39 -0.02 1.10 16 37 H 0.13 1.56 8.05 -2.38 -0.02 1.54 16 38 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 39 H 0.41 9.73 8.35 -92.71 -0.77 8.96 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 42 H 0.04 2.00 7.37 -2.39 -0.02 1.98 16 43 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 44 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 45 H 0.07 2.70 7.63 -2.39 -0.02 2.68 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -64.67 356.23 4.14 -60.52 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.17 Total: 21.16 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.92 Total: -29.18 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.93 Total: -76.39 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -64.67 4.14 -60.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.873 kcal (2) G-P(sol) polarization free energy of solvation -64.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds