Wall clock time and date at job start Tue Mar 31 2020 01:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 C 1.52996 * 109.47097 * 119.99916 * 2 1 3 5 5 C 1.53005 * 115.56032 * 33.52910 * 4 2 1 6 6 C 1.53073 * 117.51599 * 247.82614 * 4 2 1 7 7 C 1.52999 * 117.49815 * 179.21559 * 4 2 1 8 8 H 1.09009 * 117.49871 * 215.00700 * 7 4 2 9 9 C 1.50698 * 117.50155 * 0.02562 * 7 4 2 10 10 O 1.21284 * 119.99318 * 329.33225 * 9 7 4 11 11 N 1.34770 * 120.00360 * 149.05076 * 9 7 4 12 12 C 1.46497 * 120.00362 * 180.27552 * 11 9 7 13 13 H 1.09004 * 110.01525 * 325.70540 * 12 11 9 14 14 C 1.53880 * 110.03173 * 87.09474 * 12 11 9 15 15 C 1.54261 * 106.59687 * 119.28590 * 14 12 11 16 16 C 1.54885 * 104.19837 * 23.61347 * 15 14 12 17 17 H 1.08995 * 110.75775 * 80.36913 * 16 15 14 18 18 C 1.50705 * 110.75713 * 203.55936 * 16 15 14 19 19 H 1.08001 * 119.99840 * 118.54397 * 18 16 15 20 20 C 1.37877 * 119.99655 * 298.54482 * 18 16 15 21 21 N 1.31514 * 119.99808 * 180.02562 * 20 18 16 22 22 Si 1.86795 * 120.00184 * 359.97438 * 20 18 16 23 23 H 1.48497 * 109.46986 * 90.00347 * 22 20 18 24 24 H 1.48497 * 109.47282 * 210.00080 * 22 20 18 25 25 H 1.48502 * 109.47098 * 330.00369 * 22 20 18 26 26 C 1.54269 * 110.03532 * 204.31358 * 12 11 9 27 27 H 1.08997 * 109.47206 * 299.99518 * 1 2 3 28 28 H 1.08996 * 109.47024 * 60.00121 * 1 2 3 29 29 H 1.08999 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46780 * 240.00241 * 2 1 3 31 31 H 1.09004 * 109.47019 * 65.16775 * 3 2 1 32 32 H 1.08998 * 109.46654 * 185.16420 * 3 2 1 33 33 H 1.09000 * 109.47130 * 305.17025 * 3 2 1 34 34 H 1.09005 * 109.46895 * 205.68308 * 5 4 2 35 35 H 1.08996 * 109.46945 * 325.68577 * 5 4 2 36 36 H 1.09002 * 109.47116 * 85.68988 * 5 4 2 37 37 H 1.09000 * 117.49327 * 145.03806 * 6 4 2 38 38 H 1.08997 * 117.53118 * 359.97438 * 6 4 2 39 39 H 0.97001 * 119.99952 * 0.28578 * 11 9 7 40 40 H 1.08994 * 110.03062 * 238.57395 * 14 12 11 41 41 H 1.09003 * 110.02912 * 359.95614 * 14 12 11 42 42 H 1.09004 * 110.48558 * 142.29227 * 15 14 12 43 43 H 1.08996 * 110.48913 * 264.93318 * 15 14 12 44 44 H 0.96996 * 120.00207 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.48350 * 335.78825 * 26 12 11 46 46 H 1.08995 * 110.48348 * 98.42705 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.1753 -1.8845 1.7392 6 6 2.7589 0.1196 2.3073 7 6 3.5550 -0.8441 1.4250 8 1 3.9356 -1.7540 1.8894 9 6 4.4306 -0.2451 0.3548 10 8 4.0407 -0.2003 -0.7928 11 7 5.6444 0.2460 0.6738 12 6 6.4931 0.8338 -0.3656 13 1 6.3479 0.3063 -1.3084 14 6 6.1574 2.3255 -0.5390 15 6 7.4465 3.1079 -0.2141 16 6 8.5839 2.0867 -0.4638 17 1 8.8115 2.0143 -1.5273 18 6 9.8165 2.4577 0.3199 19 1 10.2041 1.7824 1.0683 20 6 10.4492 3.6593 0.0815 21 7 11.5251 3.9830 0.7651 22 14 9.7790 4.8270 -1.2134 23 1 8.7996 5.7510 -0.5873 24 1 10.8960 5.6117 -1.7980 25 1 9.1087 4.0466 -2.2843 26 6 7.9747 0.7608 0.0580 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.7542 1.9289 0.9327 32 1 3.1261 1.4439 -0.0925 33 1 1.6030 1.9824 -0.8401 34 1 1.3306 -2.0273 2.8086 35 1 0.1252 -1.6609 1.5511 36 1 1.4542 -2.7939 1.2070 37 1 2.6154 -0.1564 3.3520 38 1 2.8690 1.1865 2.1135 39 1 5.9562 0.2101 1.5916 40 1 5.8501 2.5220 -1.5661 41 1 5.3624 2.6118 0.1497 42 1 7.5505 3.9650 -0.8796 43 1 7.4451 3.4302 0.8271 44 1 11.9705 4.8281 0.5971 45 1 8.0588 0.7035 1.1433 46 1 8.4632 -0.0943 -0.4090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331424097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:03 Heat of formation + Delta-G solvation = -27.446590 kcal Electronic energy + Delta-G solvation = -22797.567748 eV Core-core repulsion = 19687.280849 eV Total energy + Delta-G solvation = -3110.286899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63651 -38.40354 -36.86719 -33.84727 -33.15048 -32.02706 -29.58444 -28.54308 -27.75013 -26.39067 -24.33863 -23.32702 -22.85246 -20.44268 -19.80222 -19.20543 -18.35574 -17.12184 -16.87307 -15.79627 -15.45614 -15.14351 -14.85235 -14.54703 -14.10911 -13.72033 -13.37252 -13.25833 -12.90263 -12.79833 -12.56694 -12.53259 -12.39713 -11.93823 -11.70425 -11.57452 -11.37216 -11.00694 -10.99081 -10.85878 -10.69561 -10.49725 -10.31748 -10.12038 -9.96966 -9.88783 -9.78503 -9.47466 -9.25647 -9.03375 -8.68552 -8.54518 -6.08805 -4.07971 2.73244 3.26675 3.28853 3.38550 3.40429 3.62584 4.41490 4.46263 4.57916 4.66499 4.77869 5.06276 5.13527 5.19894 5.27325 5.35242 5.41459 5.44630 5.54566 5.55730 5.57773 5.59515 5.61279 5.79021 5.82393 5.89545 5.96410 5.99365 6.11107 6.13866 6.23969 6.28874 6.34700 6.46325 6.47474 6.49242 6.57399 6.69880 6.83029 7.02128 7.07750 7.50510 7.73713 7.78390 8.44448 8.50629 8.94280 9.54345 11.04429 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.003816 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.810360 B = 7336.447958 C = 7686.887862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.156 4.156 4 C -0.087 4.087 5 C -0.122 4.122 6 C -0.161 4.161 7 C -0.185 4.185 8 H 0.125 0.875 9 C 0.541 3.459 10 O -0.535 6.535 11 N -0.715 5.715 12 C 0.137 3.863 13 H 0.083 0.917 14 C -0.130 4.130 15 C -0.130 4.130 16 C 0.015 3.985 17 H 0.034 0.966 18 C -0.510 4.510 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.902 5.902 22 Si 0.882 3.118 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.265 1.265 26 C -0.110 4.110 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.400 0.600 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.263 0.737 45 H 0.068 0.932 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.523 -8.995 2.515 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.213 4.213 4 C -0.087 4.087 5 C -0.179 4.179 6 C -0.198 4.198 7 C -0.206 4.206 8 H 0.142 0.858 9 C 0.327 3.673 10 O -0.413 6.413 11 N -0.366 5.366 12 C 0.033 3.967 13 H 0.101 0.899 14 C -0.168 4.168 15 C -0.168 4.168 16 C -0.004 4.004 17 H 0.052 0.948 18 C -0.548 4.548 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.541 5.541 22 Si 0.712 3.288 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.190 1.190 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.234 0.766 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.649 -8.824 1.705 22.521 hybrid contribution 0.031 0.770 -0.074 0.774 sum -20.618 -8.054 1.631 22.196 Atomic orbital electron populations 1.21945 0.95743 1.01347 1.01372 1.20602 0.94372 0.95955 0.96653 1.22174 1.02962 0.95531 1.00602 1.21576 0.90673 0.98888 0.97568 1.21507 0.99754 0.96236 1.00412 1.23424 1.02162 0.98084 0.96132 1.22360 0.94183 1.02597 1.01436 0.85753 1.19595 0.81517 0.77415 0.88767 1.90659 1.72598 1.57083 1.20977 1.46330 1.17077 1.60694 1.12470 1.21834 0.90536 0.93385 0.90901 0.89925 1.22549 0.98621 0.94846 1.00818 1.22815 0.94573 0.98404 1.01020 1.20066 0.93435 0.90015 0.96886 0.94791 1.20969 1.08611 1.04091 1.21149 0.90846 1.24987 0.94555 0.97873 0.95648 1.69899 1.19496 1.23446 1.41223 0.86898 0.77933 0.81226 0.82784 1.20466 1.22276 1.18956 1.22581 0.91269 0.99849 1.01102 0.92953 0.92911 0.92499 0.88981 0.93339 0.91114 0.93123 0.92484 0.91018 0.92101 0.88223 0.87636 0.76605 0.92338 0.92542 0.93596 0.91486 0.92682 0.91379 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.16 37.16 0.30 -1.03 16 2 C -0.06 -0.65 2.36 -90.62 -0.21 -0.87 16 3 C -0.16 -1.92 7.44 37.16 0.28 -1.64 16 4 C -0.09 -0.87 2.47 -154.47 -0.38 -1.25 16 5 C -0.12 -0.97 9.47 37.16 0.35 -0.62 16 6 C -0.16 -1.52 8.98 -26.69 -0.24 -1.76 16 7 C -0.18 -1.99 5.89 -91.77 -0.54 -2.53 16 8 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 9 C 0.54 7.58 5.69 -10.99 -0.06 7.51 16 10 O -0.54 -9.07 12.39 5.55 0.07 -9.00 16 11 N -0.72 -9.98 4.99 -52.72 -0.26 -10.24 16 12 C 0.14 2.29 3.23 -66.81 -0.22 2.07 16 13 H 0.08 1.45 7.59 -51.93 -0.39 1.06 16 14 C -0.13 -2.29 6.59 -25.61 -0.17 -2.46 16 15 C -0.13 -2.72 5.08 -25.08 -0.13 -2.84 16 16 C 0.02 0.34 2.29 -89.74 -0.21 0.14 16 17 H 0.03 0.80 7.37 -51.93 -0.38 0.41 16 18 C -0.51 -13.90 9.14 -34.44 -0.31 -14.21 16 19 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 20 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 21 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 22 Si 0.88 21.71 24.46 -169.99 -4.16 17.55 16 23 H -0.28 -6.69 7.10 56.52 0.40 -6.29 16 24 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.26 -6.26 6.48 56.52 0.37 -5.90 16 26 C -0.11 -2.04 5.96 -25.03 -0.15 -2.19 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 6.47 -51.93 -0.34 0.12 16 30 H 0.09 1.27 6.73 -51.93 -0.35 0.92 16 31 H 0.05 0.53 6.64 -51.93 -0.34 0.19 16 32 H 0.07 1.03 4.64 -51.93 -0.24 0.79 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 35 H 0.07 0.51 5.59 -51.93 -0.29 0.22 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.76 8.05 -51.93 -0.42 0.35 16 38 H 0.11 1.09 5.81 -51.93 -0.30 0.79 16 39 H 0.40 4.81 8.35 -40.82 -0.34 4.47 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.94 7.92 -51.93 -0.41 0.53 16 42 H 0.05 0.99 4.90 -51.93 -0.25 0.74 16 43 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 1.24 7.64 -51.93 -0.40 0.84 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -30.28 341.65 -8.05 -38.34 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.84 Total: 4.49 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.78 Total: -19.77 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.51 Total: -36.76 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.16 Total: 17.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.28 -8.05 -38.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331424097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.891 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds